Back to Long Tests report for BioC 3.21

This page was generated on 2025-04-19 23:55 -0400 (Sat, 19 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4831
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4573
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/30HostnameOS / ArchCHECK
biodbChebi 1.14.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-04-19 09:55 -0400 (Sat, 19 Apr 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_21
git_last_commit: b8d718f
git_last_commit_date: 2025-04-15 12:39:10 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK  
palomino7Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbChebi on lconway

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.14.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.14.0.tar.gz
StartedAt: 2025-04-19 16:01:32 -0400 (Sat, 19 Apr 2025)
EndedAt: 2025-04-19 16:04:58 -0400 (Sat, 19 Apr 2025)
EllapsedTime: 206.0 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
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Type 'demo()' for some demos, 'help()' for on-line help, or
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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-04-19 16:02:09.494][biodb::testContext]
biodb.INFO [2025-04-19 16:02:09.497][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:02:09.497][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-04-19 16:02:09.498][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:02:09.499][biodb::testContext]
biodb.INFO [2025-04-19 16:02:09.504][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:02:09.506][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-19 16:02:09.511][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:09.512][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-19 16:02:09.513][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-19 16:02:09.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.516][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-19 16:02:09.529][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-19 16:02:09.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.532][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-19 16:02:09.533][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-19 16:02:09.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.536][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-19 16:02:09.536][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-19 16:02:09.537][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-19 16:02:09.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.540][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-19 16:02:09.541][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-19 16:02:09.542][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-19 16:02:09.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.545][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-19 16:02:09.545][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-19 16:02:09.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.548][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-19 16:02:09.549][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-19 16:02:09.549][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-19 16:02:09.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.552][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-19 16:02:09.553][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-19 16:02:09.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.556][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-19 16:02:09.557][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-19 16:02:09.557][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-19 16:02:09.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.561][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:02:09.561][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-19 16:02:09.562][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-19 16:02:09.563][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-19 16:02:09.563][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-19 16:02:09.564][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-19 16:02:09.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.567][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-19 16:02:09.568][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-19 16:02:09.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.570][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-19 16:02:09.571][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-19 16:02:09.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.573][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-19 16:02:09.574][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-19 16:02:09.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.577][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-19 16:02:09.578][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-19 16:02:09.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.580][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-19 16:02:09.581][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-19 16:02:09.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.584][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:02:09.585][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-19 16:02:09.602][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-19 16:02:09.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.605][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-19 16:02:09.606][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-19 16:02:09.606][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-19 16:02:09.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.611][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:02:09.637][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.654][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-19 16:02:09.655][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.656][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:09.657][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.657][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.658][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.659][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.660][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:02:09.661][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:09.661][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.662][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-19 16:02:09.663][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:09.663][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.664][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.665][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:09.665][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:09.665][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:09.665][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:02:09.665][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:02:09.666][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:09.666][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:09.667][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:09.668][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:09.669][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:09.669][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:09.670][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.671][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.672][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:09.672][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:09.673][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.674][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.675][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:02:09.676][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.677][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:02:09.678][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.679][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:09.679][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.680][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.681][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.681][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.682][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:02:09.683][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:09.684][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.685][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-19 16:02:09.685][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:09.686][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.687][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.688][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:09.688][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:09.688][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:09.688][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:02:09.688][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:02:09.689][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:09.690][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:09.690][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:09.691][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:09.692][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:09.693][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:09.693][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.694][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.695][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:09.696][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:09.696][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.697][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.698][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:02:09.700][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.700][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-19 16:02:09.701][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.702][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:09.703][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.704][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.704][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.705][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.706][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:02:09.707][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:09.708][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.709][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-19 16:02:09.709][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:09.710][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.711][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.712][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.713][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:09.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:09.714][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:09.715][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:09.716][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:09.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:09.717][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.718][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.719][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:09.719][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:09.720][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.721][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.722][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:02:09.723][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.724][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:02:09.725][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.725][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:09.726][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.727][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.728][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.729][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.729][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:02:09.730][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:09.731][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.732][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-19 16:02:09.733][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:09.734][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.734][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:09.735][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.736][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:09.737][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:09.737][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:09.738][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:09.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:09.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:09.740][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:09.741][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.742][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:09.743][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:09.743][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:09.744][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:09.747][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:09.748][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.816][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-19 16:02:09.819][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-19 16:02:09.820][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-19 16:02:09.821][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-19 16:02:09.822][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:02:09.823][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-19 16:02:09.824][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-19 16:02:09.825][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-19 16:02:09.826][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-19 16:02:09.827][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-19 16:02:09.828][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:02:09.829][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-19 16:02:09.830][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-19 16:02:09.831][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-19 16:02:09.832][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:02:09.833][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:02:09.834][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-19 16:02:09.835][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-19 16:02:09.836][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:02:09.837][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-19 16:02:09.839][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-19 16:02:09.840][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-19 16:02:09.841][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-19 16:02:09.842][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-19 16:02:09.843][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-19 16:02:09.844][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-19 16:02:09.845][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-19 16:02:09.846][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-19 16:02:09.847][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-19 16:02:09.848][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-19 16:02:09.849][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-19 16:02:09.850][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-19 16:02:09.851][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-19 16:02:09.852][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-19 16:02:09.853][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-19 16:02:09.854][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-19 16:02:09.855][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-19 16:02:09.856][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-19 16:02:09.857][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-19 16:02:09.858][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-19 16:02:09.859][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-19 16:02:09.861][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-19 16:02:09.862][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-19 16:02:09.863][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-19 16:02:09.864][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-19 16:02:09.865][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:02:09.866][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-19 16:02:09.867][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-19 16:02:09.868][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-19 16:02:09.870][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-19 16:02:09.871][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-19 16:02:09.872][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-19 16:02:09.873][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-19 16:02:09.874][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-19 16:02:09.875][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-19 16:02:09.876][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-19 16:02:09.877][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-19 16:02:09.879][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-19 16:02:09.880][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-19 16:02:09.881][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-19 16:02:09.882][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-19 16:02:09.883][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-19 16:02:09.884][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-19 16:02:09.885][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-19 16:02:09.886][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-19 16:02:09.887][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-19 16:02:09.889][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:02:09.890][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:02:09.891][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-19 16:02:09.892][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-19 16:02:09.893][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-19 16:02:09.894][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-19 16:02:09.895][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-19 16:02:09.896][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-19 16:02:09.897][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-19 16:02:09.899][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-19 16:02:09.900][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-19 16:02:09.901][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-19 16:02:09.902][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-19 16:02:09.903][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-19 16:02:09.904][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-19 16:02:09.905][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-19 16:02:09.906][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-19 16:02:09.910][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-19 16:02:09.912][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:02:09.914][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:09.915][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.916][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:09.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:09.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:09.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:09.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:09.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:09.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:09.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:10.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:10.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:10.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:10.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:10.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:10.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:10.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:10.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:10.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:10.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:10.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:10.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:10.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:10.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:10.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:10.011][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-04-19 16:02:10.019][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-04-19 16:02:10.021][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:10.021][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-19 16:02:10.022][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:10.023][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:10.024][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:10.025][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:10.025][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:10.026][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-04-19 16:02:10.027][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:02:10.028][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:10.029][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:10.029][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-04-19 16:02:10.030][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-04-19 16:02:10.031][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-04-19 16:02:10.032][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:10.033][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:10.033][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:10.033][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:10.033][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-19 16:02:10.034][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:10.035][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:10.035][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:10.036][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:10.037][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:10.038][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:10.038][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:10.038][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-04-19 16:02:10.039][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:10.040][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:10.041][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:10.041][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-04-19 16:02:10.041][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-04-19 16:02:10.046][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:02:10.048][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:02:10.049][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-04-19 16:02:10.050][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:02:10.051][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:02:10.053][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:02:10.071][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-04-19 16:02:10.072][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-04-19 16:02:10.075][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-04-19 16:02:10.078][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-04-19 16:02:10.109][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:10.110][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:10.112][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-04-19 16:02:10.112][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-04-19 16:02:10.120][biodb::testThat]
biodb.INFO [2025-04-19 16:02:10.121][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-19 16:02:10.122][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:10.123][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:10.125][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-04-19 16:02:10.127][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:10.129][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:10.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:10.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:10.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:10.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:10.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:10.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:10.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:10.162][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.179][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:10.180][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:10.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:10.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:10.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:10.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:10.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:10.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:10.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.227][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.233][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:10.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.237][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:10.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.247][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:10.248][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:10.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:10.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:10.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.262][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:10.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:10.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.268][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:10.269][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:10.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:10.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:10.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:10.335][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-04-19 16:02:10.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.381][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:10.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.384][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:10.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:10.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.387][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:10.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:10.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.390][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:10.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:10.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.477][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:10.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:10.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:10.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:10.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:10.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:10.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.530][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:10.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:10.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:10.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:10.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:10.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:10.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:10.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:10.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:10.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:10.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.553][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:10.554][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:10.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:10.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:10.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.576][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.599][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.600][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:10.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:10.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:10.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:10.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:10.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:10.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.622][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:10.623][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:10.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.629][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:10.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:10.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.638][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.645][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.648][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.649][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.651][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.661][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.664][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.671][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.672][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:10.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:10.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:10.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:10.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:10.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:10.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.694][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:10.694][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:10.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:10.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:10.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.767][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:10.768][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:10.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.774][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:10.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:10.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.781][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.781][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.788][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.794][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.795][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.801][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.802][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.815][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.816][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.822][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:10.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:10.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.829][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:10.830][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:10.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.846][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-04-19 16:02:10.877][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:10.879][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:10.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:10.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:10.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:10.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:10.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:10.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:10.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:10.890][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.891][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.909][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:10.910][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:10.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:10.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:10.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.916][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:10.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:10.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:10.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:10.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:10.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:10.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.930][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.931][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:10.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.937][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.938][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.940][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:10.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.944][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:10.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.947][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:10.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:10.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:10.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.957][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:10.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:10.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:10.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:10.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.964][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:10.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:10.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:10.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:10.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:10.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:10.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:10.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:10.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:10.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:10.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:10.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:10.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:11.040][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-04-19 16:02:11.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.077][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:11.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:11.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.080][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:11.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:11.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.084][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:11.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:11.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.087][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:11.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:11.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.164][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.212][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:11.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:11.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:11.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:11.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:11.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:11.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.239][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:11.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:11.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:11.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.253][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:11.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.263][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:11.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:11.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.310][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.328][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.334][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.335][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.348][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.362][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.365][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.375][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.379][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.382][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.385][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.386][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.388][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.409][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.410][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.432][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.433][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.470][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.477][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.488][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:11.489][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:11.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.495][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.496][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.510][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.516][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.517][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.523][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.530][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.531][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.537][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.538][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.551][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-04-19 16:02:11.552][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:11.553][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:11.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:11.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:11.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:11.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:11.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:11.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:11.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:11.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.570][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.571][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.576][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:11.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:11.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:11.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:11.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.584][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.596][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.599][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.603][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:11.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.606][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:11.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.621][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.628][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:11.628][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.631][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:11.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.634][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.635][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:11.673][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-04-19 16:02:11.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:11.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.700][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:11.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:11.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.704][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:11.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:11.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:11.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.769][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:11.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:11.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:11.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:11.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.816][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.817][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:11.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:11.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.839][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:11.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.860][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:11.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.889][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.890][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:11.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:11.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.925][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.934][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:11.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:11.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.950][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.957][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.958][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.960][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:11.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.984][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:11.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:11.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:11.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:11.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:11.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:11.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:12.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:12.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:12.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.006][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:12.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:12.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:12.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:12.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.019][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:12.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:12.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.026][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:12.027][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:12.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.033][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:12.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:12.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.039][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:12.040][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:12.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:12.047][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:12.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.054][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:12.054][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:12.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.060][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:12.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:12.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:12.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:12.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.073][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:02:12.074][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:12.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.080][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:12.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:12.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:12.086][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:12.087][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:12.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:12.089][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:12.096][biodb::testThat]
biodb.INFO [2025-04-19 16:02:12.097][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-19 16:02:12.097][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:12.098][biodb::testThat]
biodb.DEBUG[2025-04-19 16:02:12.100][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-04-19 16:02:12.105][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-04-19 16:02:12.114][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2025-04-19 16:02:12.116][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2025-04-19 16:02:12.118][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-04-19 16:02:12.119][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:12.120][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:12.121][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:12.122][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:12.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:12.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:12.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:12.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:12.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:12.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:12.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:12.134][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2025-04-19 16:02:12.150][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:12.151][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:12.152][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2025-04-19 16:02:19.310][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2025-04-19 16:02:19.798][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:19.800][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2025-04-19 16:02:19.811][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.TRACE[2025-04-19 16:02:19.813][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml"
biodb.DEBUG[2025-04-19 16:02:19.814][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:19.815][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-04-19 16:02:19.816][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:19.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:19.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:19.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:19.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:19.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:19.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:19.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:19.834][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:19.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:19.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:19.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:19.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.840][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:19.841][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:19.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.843][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:19.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:19.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.847][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:19.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:19.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:19.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:19.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:19.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:19.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:19.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:19.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:19.864][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:19.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:19.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:19.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.872][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:19.872][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:19.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.874][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:19.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:19.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.877][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:19.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:19.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.880][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:19.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:19.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:19.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:19.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:19.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:19.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.890][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:19.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:19.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.896][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:19.897][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:19.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:19.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:19.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.902][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:19.903][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:19.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:19.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:19.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:19.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:19.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:19.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:19.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:19.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:19.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:19.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:19.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:19.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:19.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:19.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:19.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:19.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:19.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:19.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:19.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:19.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:19.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:19.940][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:19.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:19.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:19.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:19.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.946][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:19.947][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:19.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:19.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:19.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.956][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:19.957][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:19.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:19.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:19.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.965][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:19.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:19.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:19.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:19.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:19.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:19.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:19.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:19.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.978][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:19.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:19.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.981][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:19.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:19.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:19.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:19.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:19.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:19.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.993][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:19.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:19.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:19.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:19.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:19.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:19.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.000][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:20.001][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:20.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:20.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.006][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:20.007][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:20.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:20.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:20.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:20.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:20.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:20.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:20.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:20.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:20.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:20.049][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.055][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:20.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:20.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:20.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:20.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.062][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:20.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:20.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:20.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:20.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:20.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:20.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:20.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:20.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.074][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.075][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.080][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:20.081][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:20.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.083][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:20.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.087][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:20.087][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.090][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:20.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:20.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:20.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:20.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.099][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:20.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:20.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:20.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:20.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.105][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:20.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:20.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:20.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:20.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:20.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:20.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:20.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:20.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:20.215][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-04-19 16:02:20.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:20.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:20.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:20.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:20.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:20.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:20.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:20.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:20.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:20.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:20.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:20.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:20.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:20.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:20.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:20.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:20.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:20.270][biodb::testThat]
biodb.INFO [2025-04-19 16:02:20.271][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-19 16:02:20.272][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:20.273][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:20.275][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:20.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:20.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.278][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:20.279][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-04-19 16:02:20.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:20.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:20.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:20.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:20.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:20.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:20.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:20.312][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-04-19 16:02:20.332][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-04-19 16:02:20.335][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:20.346][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-04-19 16:02:20.348][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:20.349][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-04-19 16:02:20.352][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:20.355][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:20.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-19 16:02:20.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:20.359][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-19 16:02:20.360][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-04-19 16:02:20.372][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:20.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:20.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.375][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.377][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:20.381][biodb::testThat]
biodb.INFO [2025-04-19 16:02:20.382][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-19 16:02:20.382][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:20.383][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:20.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:20.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:20.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:20.459][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:20.461][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:20.462][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-19 16:02:20.463][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:20.465][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-04-19 16:02:20.480][biodb::testThat]
biodb.INFO [2025-04-19 16:02:20.481][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-19 16:02:20.482][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:20.483][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:20.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:20.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:20.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:20.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:20.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:20.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:20.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:20.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.521][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:20.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:20.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:20.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:20.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:20.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:20.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:20.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:20.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:20.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:20.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.558][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:20.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:20.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:20.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:20.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:20.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:20.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:20.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:20.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:20.573][biodb::testThat]
biodb.INFO [2025-04-19 16:02:20.574][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-19 16:02:20.574][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:20.575][biodb::testThat]
biodb.INFO [2025-04-19 16:02:20.587][biodb::testThat]
biodb.INFO [2025-04-19 16:02:20.588][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-19 16:02:20.589][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:20.589][biodb::testThat]
biodb.INFO [2025-04-19 16:02:20.598][biodb::testThat]
biodb.INFO [2025-04-19 16:02:20.599][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-19 16:02:20.600][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:20.600][biodb::testThat]
biodb.DEBUG[2025-04-19 16:02:20.603][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-04-19 16:02:21.042][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-04-19 16:02:22.315][biodb::testThat]
biodb.INFO [2025-04-19 16:02:22.316][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-19 16:02:22.316][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:22.317][biodb::testThat]
biodb.DEBUG[2025-04-19 16:02:22.660][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-04-19 16:02:23.011][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:23.012][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:23.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:23.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:23.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.017][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:23.019][biodb::testThat]
biodb.INFO [2025-04-19 16:02:23.020][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-04-19 16:02:23.020][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:23.021][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:23.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:23.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:23.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:23.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:23.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:23.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:23.111][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:23.114][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:23.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-19 16:02:23.116][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:23.117][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-19 16:02:23.170][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:23.173][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:23.174][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-19 16:02:23.175][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:23.176][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-04-19 16:02:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:02:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:02:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:23.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:23.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:23.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:23.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:23.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:23.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:23.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:23.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:23.218][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:23.222][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:23.223][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-19 16:02:23.224][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:23.226][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-19 16:02:23.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:23.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:23.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:23.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:23.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:23.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:23.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:23.241][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-04-19 16:02:23.275][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:23.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-04-19 16:02:23.277][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:23.278][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:23.279][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:23.280][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:23.281][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:23.281][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:23.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:23.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:23.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:23.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:23.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:23.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:23.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:23.306][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2025-04-19 16:02:23.318][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:23.318][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:23.329][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2025-04-19 16:02:23.662][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2025-04-19 16:02:23.997][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:23.999][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2025-04-19 16:02:24.002][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2025-04-19 16:02:24.004][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2025-04-19 16:02:24.005][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:24.006][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:24.007][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:24.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:24.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:24.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:24.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:24.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:24.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:24.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:24.019][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.025][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:24.026][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:24.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.028][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:24.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:24.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.032][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:24.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:24.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:24.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:24.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:24.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:24.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:24.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:24.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:24.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:24.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:24.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:24.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.058][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:24.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:24.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.061][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:24.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.064][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:24.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:24.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:24.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:24.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:24.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.074][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:24.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:24.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:24.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:24.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.080][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:24.081][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:24.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.084][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:24.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:24.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.087][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:24.088][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:24.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:24.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:24.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:24.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:24.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:24.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:24.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:24.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:24.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:24.153][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-04-19 16:02:24.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:24.170][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:24.173][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:24.174][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-19 16:02:24.175][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:24.176][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-19 16:02:24.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:24.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:24.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:24.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:24.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:24.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:24.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:24.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:24.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:24.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:24.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:24.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:24.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:24.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:24.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:24.222][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-04-19 16:02:24.222][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:24.224][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-04-19 16:02:24.225][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:24.226][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:24.227][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:24.227][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:24.228][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:24.229][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:24.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:24.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:24.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:24.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:24.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:24.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:24.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:24.240][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2025-04-19 16:02:24.243][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:24.244][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:24.244][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2025-04-19 16:02:24.575][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2025-04-19 16:02:24.909][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:24.910][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2025-04-19 16:02:24.913][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2025-04-19 16:02:24.915][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2025-04-19 16:02:24.917][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:24.918][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:24.919][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:24.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:24.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:24.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:24.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:24.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:24.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:24.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:24.930][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:24.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:24.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.943][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:24.943][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:24.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:24.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:24.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.948][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:24.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:24.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:24.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:24.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.954][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:24.955][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:24.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:24.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:24.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:24.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:24.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:24.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.966][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:24.967][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:24.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.969][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:24.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:24.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:24.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:24.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:24.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:24.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:24.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.982][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:24.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:24.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:24.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.989][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:24.990][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:24.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.992][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:24.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:24.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:24.997][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:24.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:24.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:24.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:25.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:25.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:25.037][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-04-19 16:02:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:25.065][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:25.067][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:25.068][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-19 16:02:25.069][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:25.071][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-19 16:02:25.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:25.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:25.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:25.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:25.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:25.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:25.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:25.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:25.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:25.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:25.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:25.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:25.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:25.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:25.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:25.105][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-04-19 16:02:25.106][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:25.107][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-04-19 16:02:25.108][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:25.109][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:25.110][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:25.111][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:25.111][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:25.112][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:25.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:25.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:25.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:25.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:25.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:25.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:25.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:25.123][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2025-04-19 16:02:25.125][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:25.126][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:25.127][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2025-04-19 16:02:25.455][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2025-04-19 16:02:25.786][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:25.788][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2025-04-19 16:02:25.791][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2025-04-19 16:02:25.793][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2025-04-19 16:02:25.794][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:25.795][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:25.796][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:25.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:25.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:25.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:25.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:25.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:25.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:25.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:25.808][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.808][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.814][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:25.815][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:25.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.817][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:25.818][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:25.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:25.821][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:25.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:25.825][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:25.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:25.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:25.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.831][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:25.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:25.839][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:25.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.844][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:25.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:25.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:25.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:25.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.850][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:25.851][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:25.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.853][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:25.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:25.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.856][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:25.857][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:25.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:25.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:25.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:25.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:25.890][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-04-19 16:02:25.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:25.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:25.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:25.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:25.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:25.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:25.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:25.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:25.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:25.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:25.921][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-04-19 16:02:25.922][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:25.923][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-04-19 16:02:25.924][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:25.925][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:25.926][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:25.927][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:25.927][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:25.928][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:25.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:25.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:25.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:25.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:25.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:25.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:25.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:25.939][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2025-04-19 16:02:25.941][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:25.942][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:25.943][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2025-04-19 16:02:26.274][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2025-04-19 16:02:26.608][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:26.609][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2025-04-19 16:02:26.612][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2025-04-19 16:02:26.614][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2025-04-19 16:02:26.615][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:26.616][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:26.617][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:26.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:26.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:26.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:26.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:26.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:26.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:26.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:26.628][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:26.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:26.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:26.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.634][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:26.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:26.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.637][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:26.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:26.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.640][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:26.641][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:26.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.643][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:26.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:26.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.646][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:26.647][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:26.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.649][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:26.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:26.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:26.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.655][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:26.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:26.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:26.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:26.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.668][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:26.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:26.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:26.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:26.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.674][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:26.675][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:26.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:26.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:26.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:26.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:26.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:26.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:26.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:26.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:26.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:26.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:26.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:26.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:26.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:26.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:26.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:26.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:26.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:26.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:26.707][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-04-19 16:02:26.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:26.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:26.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:26.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:26.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:26.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:26.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:26.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:26.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:26.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:26.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:26.732][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-04-19 16:02:26.733][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:26.734][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-04-19 16:02:26.739][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:26.740][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:26.741][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:26.742][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:26.743][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:26.743][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:26.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:26.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:26.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:26.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:26.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:26.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:26.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:26.754][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2025-04-19 16:02:26.756][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:26.757][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:26.758][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2025-04-19 16:02:27.087][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2025-04-19 16:02:27.418][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:27.420][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2025-04-19 16:02:27.423][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2025-04-19 16:02:27.425][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2025-04-19 16:02:27.426][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:27.427][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:27.428][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:27.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:27.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:27.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:27.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:27.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:27.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:27.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:27.439][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:27.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:27.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.446][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:27.447][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:27.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.449][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:27.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:27.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:27.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:27.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.456][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:27.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:27.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.459][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:27.460][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:27.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.462][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:27.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:27.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:27.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.469][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:27.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:27.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:27.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.482][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:27.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:27.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.485][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:27.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:27.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.488][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:27.488][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:27.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:27.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:27.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:27.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:27.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:27.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:27.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:27.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:27.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:27.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:27.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:27.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:27.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:27.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:27.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:27.521][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-04-19 16:02:27.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:27.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:27.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:27.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:27.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:27.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:27.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:27.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:27.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:27.545][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-04-19 16:02:27.546][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:27.547][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-04-19 16:02:27.548][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:27.549][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:27.550][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:27.550][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:27.561][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:27.562][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:27.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:27.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:27.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:27.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:27.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:27.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:27.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:27.572][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2025-04-19 16:02:27.574][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:27.575][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:27.576][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2025-04-19 16:02:27.907][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2025-04-19 16:02:28.252][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:28.254][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2025-04-19 16:02:28.257][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2025-04-19 16:02:28.259][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2025-04-19 16:02:28.260][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:28.261][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:28.262][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:28.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:28.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:28.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:28.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:28.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:28.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:28.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:28.273][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.279][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:28.280][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:28.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:28.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.285][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:28.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:28.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:28.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:28.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:28.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:28.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:28.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:28.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:28.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:28.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:28.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:28.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:28.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:28.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:28.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:28.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.311][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:28.318][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:28.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.321][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:28.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:28.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:28.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:28.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:28.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:28.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.330][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:28.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:28.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:28.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.336][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:28.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:28.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.339][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:28.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:28.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.342][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:28.343][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:28.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:28.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:28.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:28.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:28.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:28.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:28.378][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-04-19 16:02:28.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:28.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:28.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:28.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:28.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:28.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:28.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:28.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:28.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:28.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:28.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:28.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:28.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:28.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:28.400][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-04-19 16:02:28.401][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:28.402][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-04-19 16:02:28.403][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:28.404][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:28.405][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:28.406][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:28.406][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:28.407][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:28.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:28.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:28.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:28.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:28.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:28.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:28.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:28.417][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2025-04-19 16:02:28.419][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:28.420][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:28.421][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2025-04-19 16:02:28.752][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2025-04-19 16:02:29.097][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:29.099][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2025-04-19 16:02:29.102][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2025-04-19 16:02:29.104][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2025-04-19 16:02:29.105][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:29.106][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:29.107][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:29.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:29.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:29.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:29.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:29.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:29.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:29.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:29.118][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:29.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:29.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:29.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:29.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.125][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:29.125][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:29.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.128][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:29.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:29.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.131][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:29.132][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:29.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:29.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:29.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:29.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:29.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:29.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:29.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.143][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:29.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:29.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:29.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:29.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:29.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:29.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:29.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.164][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:29.164][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:29.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.167][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:29.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:29.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.170][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:29.171][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:29.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:29.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.176][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:29.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:29.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:29.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.183][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:29.184][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:29.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:29.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:29.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.189][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:29.190][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:29.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:29.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:29.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:29.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:29.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:29.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:29.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:29.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:29.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:29.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:29.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:29.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:29.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:29.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:29.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:29.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:29.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:29.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:29.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:29.230][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-04-19 16:02:29.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:29.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:29.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:29.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:29.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:29.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:29.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:29.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:29.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:29.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:29.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:29.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:29.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:29.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:29.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:29.247][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-04-19 16:02:29.248][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:29.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-04-19 16:02:29.250][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:29.251][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:29.252][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:29.253][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:29.254][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:29.254][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:29.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:29.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:29.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:29.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:29.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:29.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:29.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:29.265][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2025-04-19 16:02:29.267][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:29.268][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:29.269][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2025-04-19 16:02:29.599][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2025-04-19 16:02:30.187][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:30.189][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2025-04-19 16:02:30.192][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2025-04-19 16:02:30.194][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2025-04-19 16:02:30.195][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:30.196][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:30.197][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:30.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:30.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:30.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:30.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:30.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:30.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:30.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:30.207][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:30.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:30.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.213][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:30.214][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:30.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:30.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.224][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:30.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:30.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:30.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:30.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.233][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:30.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:30.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:30.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:30.239][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:30.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:30.245][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:30.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.248][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:30.249][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:30.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.251][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:30.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.254][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:30.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:30.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:30.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:30.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.260][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:30.261][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:30.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.266][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:30.267][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:30.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:30.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.272][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:30.273][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:30.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:30.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:30.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:30.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:30.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:30.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:30.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:30.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:30.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:30.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:30.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:30.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:30.313][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-04-19 16:02:30.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:30.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:30.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:30.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:30.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:30.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:30.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:30.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:30.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:30.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:30.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:30.332][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-04-19 16:02:30.333][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:30.334][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-04-19 16:02:30.335][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:30.336][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:30.337][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:30.338][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:30.338][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:30.339][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:30.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:30.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:30.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:30.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:30.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:30.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:30.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:30.350][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2025-04-19 16:02:30.352][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:30.352][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:30.353][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2025-04-19 16:02:30.685][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2025-04-19 16:02:31.024][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:31.025][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2025-04-19 16:02:31.028][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2025-04-19 16:02:31.030][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2025-04-19 16:02:31.032][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:31.033][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:31.034][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:31.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:31.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:31.044][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.058][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:31.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:31.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:31.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:31.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.064][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:31.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:31.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:31.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:31.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:31.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:31.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.077][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:31.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:31.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.083][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:31.084][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:31.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.087][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:31.087][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.090][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:31.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:31.094][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:31.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.099][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:31.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:31.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:31.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:31.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.106][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:31.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:31.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:31.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:31.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:31.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:31.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:31.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:31.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:31.152][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-04-19 16:02:31.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:31.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:31.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.171][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-04-19 16:02:31.172][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:31.173][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-04-19 16:02:31.174][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:31.175][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:31.175][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:31.176][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:31.177][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:31.178][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:31.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:31.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.188][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2025-04-19 16:02:31.190][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:31.191][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:31.192][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2025-04-19 16:02:31.524][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2025-04-19 16:02:31.860][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:31.862][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2025-04-19 16:02:31.865][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2025-04-19 16:02:31.868][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2025-04-19 16:02:31.869][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:31.870][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:31.871][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:31.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:31.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:31.889][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.895][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:31.896][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:31.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:31.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:31.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.901][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:31.902][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:31.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:31.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:31.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:31.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:31.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:31.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.913][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:31.914][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:31.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:31.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.919][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:31.920][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:31.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.922][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:31.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.926][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:31.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:31.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:31.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:31.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.935][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:31.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:31.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:31.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:31.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.941][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:31.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:31.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.947][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:31.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:31.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:31.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:31.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:31.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:31.988][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-04-19 16:02:31.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:31.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:31.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:31.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:31.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:32.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:32.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:32.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:32.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:32.006][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-04-19 16:02:32.007][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:32.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-04-19 16:02:32.009][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:32.010][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:32.011][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:32.012][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:32.012][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:32.013][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:32.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:32.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:32.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:32.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:32.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:32.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:32.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:32.024][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2025-04-19 16:02:32.026][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:32.027][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:32.028][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2025-04-19 16:02:32.365][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2025-04-19 16:02:32.707][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:32.710][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2025-04-19 16:02:32.713][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2025-04-19 16:02:32.715][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2025-04-19 16:02:32.716][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:32.717][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:32.718][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:32.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:32.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:32.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:32.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:32.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:32.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:32.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:32.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.734][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:32.735][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:32.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.737][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:32.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:32.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.740][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:32.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:32.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:32.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.746][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:32.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:32.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:32.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:32.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:32.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:32.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:32.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:32.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.758][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:32.759][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:32.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.762][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:32.763][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:32.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:32.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:32.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:32.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:32.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:32.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.774][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:32.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:32.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.786][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:32.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:32.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:32.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:32.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.792][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:32.793][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:32.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:32.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:32.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:32.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:32.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:32.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:32.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:32.828][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-04-19 16:02:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:32.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:32.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:32.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:32.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:32.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:32.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:32.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:32.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:32.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:32.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:32.846][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-04-19 16:02:32.847][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:32.848][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-04-19 16:02:32.849][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:32.850][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:32.851][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:32.851][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:32.852][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:32.853][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:32.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:32.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:32.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:32.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:32.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:32.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:32.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:32.868][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2025-04-19 16:02:32.870][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:32.871][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:32.872][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2025-04-19 16:02:33.204][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2025-04-19 16:02:33.538][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:33.540][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2025-04-19 16:02:33.543][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2025-04-19 16:02:33.545][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2025-04-19 16:02:33.546][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:33.547][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:33.548][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:33.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:33.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:33.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:33.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:33.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:33.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:33.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:33.559][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:33.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:33.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.565][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:33.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:33.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:33.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:33.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:33.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:33.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:33.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:33.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:33.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:33.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:33.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:33.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:33.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:33.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:33.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:33.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.593][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:33.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:33.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.596][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:33.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:33.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.599][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:33.600][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:33.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:33.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:33.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.613][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:33.613][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:33.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:33.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.619][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:33.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:33.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.625][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:33.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:33.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:33.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:33.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:33.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:33.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:33.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:33.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:33.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:33.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:33.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:33.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:33.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:33.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:33.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:33.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:33.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:33.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:33.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:33.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:33.660][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-04-19 16:02:33.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:33.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:33.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:33.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:33.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:33.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:33.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:33.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:33.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:33.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:33.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:33.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:33.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:33.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:33.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:33.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:33.683][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-04-19 16:02:33.684][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:33.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-04-19 16:02:33.686][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:33.687][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:33.688][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:33.688][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:33.689][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:33.690][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:33.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:33.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:33.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:33.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:33.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:33.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:33.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:33.700][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2025-04-19 16:02:33.702][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:33.703][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:33.704][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2025-04-19 16:02:34.035][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2025-04-19 16:02:34.372][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:34.374][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2025-04-19 16:02:34.377][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2025-04-19 16:02:34.379][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2025-04-19 16:02:34.380][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:34.381][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:34.382][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:34.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:34.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:34.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:34.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:34.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:34.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:34.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:34.393][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.399][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:34.400][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:34.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:34.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.405][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:34.406][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:34.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:34.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:34.412][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:34.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:34.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:34.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.417][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:34.418][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:34.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.420][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:34.421][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:34.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.429][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:34.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:34.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:34.433][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:34.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:34.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.439][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:34.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:34.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:34.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.445][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:34.446][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:34.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:34.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:34.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.451][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:34.452][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:34.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:34.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:34.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:34.485][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-04-19 16:02:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:34.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:34.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:34.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:34.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:34.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:34.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:34.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:34.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:34.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:34.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:34.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:34.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:34.509][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-04-19 16:02:34.510][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:34.511][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-04-19 16:02:34.512][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:34.513][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:34.514][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:34.514][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:34.515][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:34.516][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:34.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:34.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:34.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:34.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:34.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:34.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:34.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:34.526][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2025-04-19 16:02:34.528][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:34.529][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:34.530][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2025-04-19 16:02:34.859][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2025-04-19 16:02:35.188][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:35.190][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2025-04-19 16:02:35.193][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2025-04-19 16:02:35.195][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2025-04-19 16:02:35.196][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:35.197][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:35.198][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:35.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:35.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:35.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:35.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:35.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:35.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:35.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:35.209][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:35.210][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:35.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:35.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:35.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.215][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:35.216][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:35.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:35.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.221][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:35.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:35.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:35.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:35.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:35.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:35.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:35.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.233][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:35.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:35.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.243][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:35.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:35.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:35.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:35.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:35.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.256][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:35.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:35.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:35.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:35.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.262][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:35.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:35.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:35.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:35.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.268][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:35.269][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:35.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:35.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:35.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:35.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:35.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:35.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:35.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:35.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:35.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:35.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:35.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:35.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:35.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:35.302][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-04-19 16:02:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:35.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:35.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:35.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:35.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:35.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:35.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:35.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:35.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:35.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:35.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:35.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:35.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:35.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:35.324][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-04-19 16:02:35.325][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:35.326][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-04-19 16:02:35.327][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:35.327][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:35.328][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:35.329][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:35.330][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:35.330][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:35.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:35.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:35.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:35.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:35.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:35.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:35.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:35.341][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2025-04-19 16:02:35.343][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:35.343][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:35.344][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2025-04-19 16:02:35.676][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2025-04-19 16:02:36.042][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:36.044][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2025-04-19 16:02:36.046][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2025-04-19 16:02:36.048][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2025-04-19 16:02:36.049][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:36.050][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:36.051][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:36.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:36.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:36.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:36.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:36.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:36.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:36.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:36.062][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:36.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:36.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:36.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:36.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.068][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:36.068][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:36.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:36.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:36.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:36.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:36.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:36.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:36.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:36.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:36.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:36.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:36.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.099][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:36.099][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:36.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.102][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:36.102][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:36.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.105][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:36.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:36.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:36.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:36.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:36.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:36.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:36.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.119][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:36.120][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:36.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:36.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:36.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.125][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:36.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:36.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:36.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:36.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:36.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:36.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:36.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:36.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:36.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:36.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:36.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:36.290][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-04-19 16:02:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:36.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:36.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:36.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:36.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:36.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:36.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:36.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:36.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:36.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:36.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:36.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:36.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:36.307][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-04-19 16:02:36.308][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:36.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-04-19 16:02:36.310][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:36.311][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:36.312][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:36.312][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:36.313][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:36.314][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:36.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:36.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:36.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:36.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:36.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:36.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:36.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:36.324][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2025-04-19 16:02:36.326][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:36.327][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:36.328][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2025-04-19 16:02:36.658][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2025-04-19 16:02:37.002][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:37.004][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2025-04-19 16:02:37.007][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2025-04-19 16:02:37.009][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2025-04-19 16:02:37.010][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:37.011][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:37.011][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:37.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:37.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:37.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:37.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:37.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:37.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:37.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:37.022][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.028][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:37.028][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:37.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.030][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:37.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:37.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.033][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:37.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:37.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:37.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:37.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.039][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:37.040][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:37.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.041][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:37.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.045][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:37.046][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:37.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:37.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:37.052][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:37.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.055][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:37.056][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:37.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:37.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:37.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:37.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.068][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:37.068][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:37.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:37.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.074][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:37.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:37.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:37.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:37.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:37.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:37.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:37.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:37.118][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-04-19 16:02:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:37.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:37.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:37.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:37.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:37.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:37.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:37.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:37.137][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-04-19 16:02:37.138][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:37.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-04-19 16:02:37.140][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:37.141][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:37.142][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:37.143][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:37.144][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:37.144][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:37.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:37.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:37.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:37.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:37.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:37.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:37.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:37.156][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2025-04-19 16:02:37.158][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:37.159][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:37.160][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2025-04-19 16:02:37.494][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2025-04-19 16:02:37.834][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:37.835][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2025-04-19 16:02:37.839][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2025-04-19 16:02:37.841][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2025-04-19 16:02:37.842][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:37.843][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:37.844][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:37.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:37.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:37.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:37.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:37.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:37.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:37.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:37.856][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.862][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:37.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:37.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.866][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:37.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:37.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:37.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:37.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:37.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.876][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:37.877][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:37.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.883][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:37.884][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:37.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:37.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.889][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:37.890][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:37.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.893][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:37.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.896][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:37.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.899][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:37.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:37.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:37.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:37.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.906][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:37.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:37.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:37.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.912][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:37.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:37.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.924][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:37.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:37.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.927][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:37.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:37.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:37.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:37.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:37.962][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-04-19 16:02:37.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:37.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:37.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:37.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:37.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:37.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:37.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:37.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:37.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:37.981][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-04-19 16:02:37.981][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:37.983][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-04-19 16:02:37.984][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:37.984][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:37.985][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:37.986][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:37.987][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:37.988][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:37.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:37.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:37.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:37.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:37.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:37.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:37.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:37.999][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2025-04-19 16:02:38.001][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:38.001][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:38.002][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2025-04-19 16:02:38.344][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2025-04-19 16:02:38.697][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:38.699][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2025-04-19 16:02:38.702][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2025-04-19 16:02:38.703][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2025-04-19 16:02:38.705][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:38.706][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:38.706][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:38.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:38.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:38.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:38.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:38.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:38.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:38.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:38.717][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.718][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.723][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:38.723][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:38.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.726][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:38.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:38.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.729][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:38.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:38.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:38.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:38.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.735][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:38.735][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:38.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:38.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:38.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:38.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:38.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:38.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:38.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:38.747][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:38.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.750][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:38.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:38.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.753][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:38.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:38.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:38.756][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:38.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:38.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:38.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.762][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:38.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:38.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.768][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:38.769][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:38.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.774][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:38.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:38.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:38.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:38.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:38.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:38.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:38.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:38.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:38.810][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-04-19 16:02:38.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:38.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:38.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:38.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:38.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:38.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:38.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:38.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:38.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:38.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:38.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:38.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:38.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:38.828][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-04-19 16:02:38.829][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:38.830][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-04-19 16:02:38.831][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:38.832][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:38.832][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:38.833][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:38.834][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:38.834][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:38.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:38.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:38.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:38.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:38.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:38.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:38.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:38.845][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2025-04-19 16:02:38.847][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:38.848][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:38.849][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2025-04-19 16:02:39.188][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2025-04-19 16:02:39.529][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:39.531][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2025-04-19 16:02:39.534][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2025-04-19 16:02:39.536][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2025-04-19 16:02:39.537][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:39.538][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:39.538][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:39.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:39.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:39.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:39.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:39.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:39.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:39.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:39.548][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.555][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:39.556][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:39.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:39.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:39.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.561][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:39.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:39.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:39.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:39.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:39.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:39.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.586][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:39.587][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:39.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.589][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:39.590][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.600][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:39.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:39.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:39.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:39.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.606][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:39.607][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:39.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:39.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:39.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.612][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:39.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:39.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:39.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:39.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:39.645][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-04-19 16:02:39.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:39.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:39.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:39.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:39.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:39.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:39.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:39.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:39.663][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-04-19 16:02:39.664][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:39.665][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-04-19 16:02:39.666][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:39.667][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-04-19 16:02:39.668][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:39.669][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:39.670][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:39.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:39.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:39.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:39.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:39.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:39.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:39.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:39.680][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.685][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:39.686][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:39.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.689][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:39.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:39.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.691][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:39.692][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:39.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:39.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:39.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:39.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:39.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:39.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.703][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.709][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:39.710][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:39.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.712][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:39.713][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.715][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:39.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.724][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:39.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:39.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:39.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.730][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:39.731][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:39.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.733][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:39.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:39.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.736][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:39.736][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:39.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:39.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:39.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:39.770][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-04-19 16:02:39.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:39.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:39.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:39.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:39.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:39.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:39.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:39.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:39.788][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-04-19 16:02:39.789][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:39.790][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-04-19 16:02:39.791][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:39.793][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-04-19 16:02:39.794][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:39.795][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:39.796][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:39.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:39.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:39.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:39.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:39.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:39.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:39.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:39.807][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.813][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:39.813][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:39.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:39.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:39.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.819][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:39.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:39.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:39.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:39.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.825][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:39.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:39.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:39.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:39.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.835][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:39.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:39.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:39.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.843][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:39.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.846][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:39.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:39.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.856][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:39.856][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:39.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:39.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.861][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:39.862][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:39.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:39.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:39.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.867][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:39.868][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:39.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:39.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:39.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:39.900][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-04-19 16:02:39.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:39.925][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:39.928][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:39.929][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-19 16:02:39.930][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:39.931][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-19 16:02:39.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:39.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:39.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:39.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:39.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:39.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:39.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:39.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:39.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:39.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:39.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:39.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:39.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:39.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:39.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:39.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:39.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:39.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:39.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:39.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:39.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:39.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:39.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:39.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:39.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:39.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:39.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:39.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:39.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:39.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.343][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:40.346][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:40.347][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-04-19 16:02:40.349][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:40.350][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-04-19 16:02:40.352][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:40.355][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:40.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-04-19 16:02:40.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:40.358][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-04-19 16:02:40.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:40.369][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-04-19 16:02:40.369][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:40.371][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-04-19 16:02:40.372][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:40.373][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-04-19 16:02:40.374][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:40.375][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:40.376][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:40.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.392][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.398][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:40.398][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:40.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.401][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:40.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:40.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.403][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:40.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:40.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:40.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:40.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:40.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:40.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:40.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:40.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:40.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:40.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.422][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:40.422][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:40.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:40.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.427][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:40.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.430][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:40.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.438][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:40.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:40.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.444][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:40.445][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:40.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.447][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:40.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.450][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:40.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:40.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:40.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:40.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.483][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-04-19 16:02:40.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:40.518][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-04-19 16:02:40.519][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:40.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-04-19 16:02:40.521][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:40.523][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-04-19 16:02:40.523][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:40.524][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:40.525][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:40.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.536][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.542][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:40.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:40.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:40.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:40.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.547][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:40.548][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:40.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.553][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:40.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:40.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:40.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:40.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.565][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:40.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:40.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.567][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:40.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.570][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:40.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:40.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.579][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:40.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:40.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:40.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.585][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:40.586][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:40.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.588][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:40.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:40.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.591][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:40.592][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:40.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:40.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:40.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.625][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-04-19 16:02:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.654][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:40.656][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:40.657][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-19 16:02:40.658][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:40.659][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-19 16:02:40.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:40.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.036][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:41.038][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:41.039][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-19 16:02:41.040][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:41.041][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-19 16:02:41.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:41.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.416][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:02:41.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:02:41.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:41.426][biodb::testThat]
biodb.INFO [2025-04-19 16:02:41.427][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-04-19 16:02:41.428][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:41.429][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:41.431][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:02:41.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:02:41.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:02:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:02:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.437][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:02:41.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:02:41.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:41.490][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:41.492][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:41.493][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-19 16:02:41.494][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:41.495][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-19 16:02:41.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.518][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:41.521][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:41.522][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-19 16:02:41.522][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:41.523][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-19 16:02:41.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:41.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.559][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:02:41.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.575][private$selectFields]
biodb.TRACE[2025-04-19 16:02:41.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:41.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:41.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.583][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.584][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.587][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.603][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-19 16:02:41.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.618][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.619][private$selectFields]
biodb.TRACE[2025-04-19 16:02:41.619][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:41.620][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:41.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.628][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.632][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:41.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.641][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:02:41.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.657][private$selectFields]
biodb.TRACE[2025-04-19 16:02:41.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:41.658][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:41.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.665][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.666][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:41.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.670][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:41.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:41.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-19 16:02:41.681][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:02:41.681][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:02:41.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:41.693][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:41.696][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:41.696][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:41.698][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:02:42.045][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:02:42.375][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:42.377][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2025-04-19 16:02:42.380][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2025-04-19 16:02:42.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:42.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:42.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:42.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:42.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:42.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:42.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:42.391][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-04-19 16:02:42.392][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:42.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2025-04-19 16:02:42.394][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:42.394][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:42.395][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:42.396][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:42.397][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:42.397][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:42.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:42.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:42.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:42.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:42.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:42.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:42.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:42.407][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2025-04-19 16:02:42.409][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:42.410][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:42.418][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2025-04-19 16:02:42.748][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2025-04-19 16:02:43.088][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:43.090][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2025-04-19 16:02:43.092][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2025-04-19 16:02:43.094][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2025-04-19 16:02:43.095][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:43.096][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:43.097][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:43.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:43.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:43.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:43.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:43.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:43.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:43.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:43.107][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.113][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:43.114][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:43.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.116][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:43.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:43.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.119][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:43.120][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:43.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:43.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.125][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:43.126][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:43.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:43.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:43.131][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:43.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:43.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:43.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:43.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:43.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.139][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:43.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:43.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.143][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:43.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.146][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:43.147][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:43.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:43.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:43.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.152][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:43.153][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:43.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:43.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:43.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.158][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:43.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:43.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:43.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:43.165][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:43.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:43.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:43.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:43.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:43.221][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-04-19 16:02:43.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:43.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:43.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:43.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:43.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:43.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:43.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:43.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:43.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:43.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:43.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:43.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:43.240][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-04-19 16:02:43.241][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:43.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2025-04-19 16:02:43.243][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:43.244][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:43.245][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:43.245][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:43.246][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:43.247][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:43.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:43.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:43.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:43.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:43.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:43.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:43.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:43.257][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2025-04-19 16:02:43.259][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:43.260][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:43.261][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2025-04-19 16:02:43.590][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2025-04-19 16:02:43.919][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:43.921][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2025-04-19 16:02:43.924][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2025-04-19 16:02:43.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2025-04-19 16:02:43.928][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:43.929][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:43.929][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:43.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:43.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:43.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:43.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:43.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:43.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:43.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:43.941][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.947][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:43.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:43.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:43.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:43.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.954][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:43.954][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:43.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:43.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:43.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.960][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:43.961][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:43.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:43.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:43.967][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:43.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.972][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:43.973][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:43.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.975][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:43.976][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:43.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:43.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:43.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:43.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.987][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:43.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:43.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:43.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:43.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.994][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:43.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:43.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:43.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.009][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:44.009][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:44.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:44.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:44.044][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-04-19 16:02:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:44.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:44.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:44.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:44.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:44.056][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:44.057][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:44.059][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:02:44.393][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:02:44.724][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:44.726][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2025-04-19 16:02:44.728][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2025-04-19 16:02:44.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:44.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:44.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:44.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:44.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:44.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:44.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:44.739][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-04-19 16:02:44.740][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:44.741][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2025-04-19 16:02:44.742][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:44.743][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:44.744][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:44.744][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:44.745][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:44.746][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:44.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:44.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:44.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:44.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:44.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:44.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:44.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:44.756][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2025-04-19 16:02:44.758][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:44.759][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:44.760][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2025-04-19 16:02:45.091][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2025-04-19 16:02:45.548][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:45.550][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2025-04-19 16:02:45.553][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2025-04-19 16:02:45.555][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2025-04-19 16:02:45.557][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:45.558][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:45.559][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:45.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:45.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:45.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:45.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:45.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:45.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:45.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:45.570][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:45.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:45.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:45.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:45.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.577][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:45.578][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:45.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:45.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:45.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.583][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:45.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:45.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:45.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:45.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:45.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:45.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:45.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:45.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:45.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:45.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:45.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.603][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:45.604][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:45.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:45.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.609][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:45.610][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:45.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.613][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:45.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:45.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:45.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:45.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:45.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:45.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.623][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:45.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:45.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.629][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:45.630][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:45.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.633][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:45.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.636][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:45.637][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:45.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:45.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:45.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:45.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:45.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:45.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:45.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:45.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:45.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:45.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:45.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:45.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:45.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:45.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:45.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:45.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:45.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:45.694][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-04-19 16:02:45.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:45.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:45.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:45.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:45.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:45.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:45.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:45.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:45.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:45.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:45.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:45.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:45.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:45.713][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-04-19 16:02:45.714][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:45.715][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2025-04-19 16:02:45.716][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:45.717][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:45.718][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:45.719][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:45.720][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:45.720][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:45.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:45.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:45.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:45.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:45.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:45.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:45.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:45.732][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2025-04-19 16:02:45.734][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:45.735][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:45.736][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2025-04-19 16:02:46.067][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2025-04-19 16:02:46.410][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:46.412][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2025-04-19 16:02:46.415][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2025-04-19 16:02:46.417][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2025-04-19 16:02:46.418][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:46.419][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:46.420][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:46.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:46.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:46.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:46.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:46.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:46.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:46.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:46.449][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.456][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:46.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:46.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.460][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:46.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:46.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:46.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:46.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:46.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:46.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:46.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:46.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:46.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:46.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:46.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:46.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:46.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:46.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:46.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.491][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.494][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:46.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:46.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.497][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:46.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:46.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:46.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:46.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:46.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.506][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:46.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:46.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:46.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.512][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:46.513][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:46.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.515][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.518][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:46.519][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:46.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:46.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:46.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:46.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:46.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:46.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:46.554][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-04-19 16:02:46.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:46.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:46.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:46.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:46.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:46.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:46.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:46.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:46.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:46.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:46.573][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-04-19 16:02:46.574][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:46.575][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2025-04-19 16:02:46.576][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:46.577][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:46.578][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:46.579][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:46.579][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:46.580][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:46.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:46.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:46.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:46.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:46.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:46.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:46.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:46.591][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2025-04-19 16:02:46.593][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:46.594][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:46.595][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2025-04-19 16:02:46.928][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2025-04-19 16:02:47.264][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:47.266][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2025-04-19 16:02:47.269][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2025-04-19 16:02:47.271][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2025-04-19 16:02:47.273][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:47.274][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:47.275][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:47.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:47.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:47.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:47.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:47.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:47.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:47.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:47.286][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:47.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:47.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:47.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:47.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.292][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:47.293][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:47.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:47.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:47.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.299][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:47.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:47.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:47.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:47.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:47.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:47.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:47.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:47.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:47.312][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:47.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.318][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:47.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:47.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.321][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:47.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:47.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:47.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:47.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:47.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:47.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:47.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.334][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:47.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:47.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:47.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:47.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.341][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:47.342][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:47.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:47.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:47.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:47.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:47.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:47.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:47.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:47.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:47.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:47.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:47.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:47.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:47.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:47.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:47.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:47.385][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-04-19 16:02:47.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:47.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:47.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:47.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:47.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:47.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:47.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:47.417][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:02:47.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:47.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:47.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:47.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:47.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:47.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:47.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:47.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.449][private$selectFields]
biodb.TRACE[2025-04-19 16:02:47.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:47.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:47.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.458][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.462][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:47.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:02:47.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:47.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:47.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:47.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:47.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:47.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:47.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.489][private$selectFields]
biodb.TRACE[2025-04-19 16:02:47.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:47.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:47.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.498][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.502][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:47.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-19 16:02:47.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:47.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:47.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:47.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:47.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:47.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:47.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.529][private$selectFields]
biodb.TRACE[2025-04-19 16:02:47.530][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:47.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:47.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.539][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:47.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.542][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:47.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:47.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-19 16:02:47.553][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:02:47.554][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:02:47.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:47.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:47.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:47.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:47.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:47.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:47.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:47.565][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:47.568][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:47.569][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:47.570][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:02:47.903][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:02:48.235][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:48.236][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2025-04-19 16:02:48.240][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2025-04-19 16:02:48.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:48.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:48.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:48.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:48.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:48.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:48.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:48.251][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-04-19 16:02:48.252][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:48.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2025-04-19 16:02:48.254][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:48.255][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:48.255][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:48.256][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:48.257][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:48.258][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:48.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:48.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:48.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:48.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:48.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:48.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:48.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:48.269][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2025-04-19 16:02:48.271][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:48.271][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:48.272][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2025-04-19 16:02:48.602][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2025-04-19 16:02:48.939][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:48.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2025-04-19 16:02:48.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2025-04-19 16:02:48.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2025-04-19 16:02:48.948][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:48.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:48.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:48.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:48.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:48.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:48.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:48.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:48.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:48.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:48.960][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:48.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:48.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:48.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:48.967][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:48.968][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:48.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:48.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:48.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:48.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:48.973][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:48.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:48.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:48.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:48.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:48.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:48.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:48.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:48.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:48.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:48.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:48.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:48.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:48.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:48.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:48.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:48.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:48.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:48.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:48.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:48.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:48.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:49.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:49.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.004][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:49.005][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:49.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:49.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:49.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:49.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:49.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.016][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:49.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:49.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:49.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:49.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:49.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:49.029][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:49.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:49.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:49.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:49.063][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-04-19 16:02:49.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:49.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:49.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:49.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:49.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:49.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:49.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:49.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:49.081][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-04-19 16:02:49.082][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:49.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2025-04-19 16:02:49.084][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:49.085][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:49.086][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:49.087][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:49.088][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:49.088][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:49.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:49.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:49.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:49.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:49.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:49.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:49.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:49.099][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2025-04-19 16:02:49.101][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:49.102][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:49.103][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2025-04-19 16:02:49.437][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2025-04-19 16:02:49.768][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:49.770][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2025-04-19 16:02:49.772][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2025-04-19 16:02:49.774][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2025-04-19 16:02:49.775][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:49.776][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:49.777][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:49.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:49.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:49.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:49.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:49.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:49.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:49.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:49.788][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.789][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.794][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:49.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:49.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.797][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.800][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:49.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:49.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:49.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:49.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:49.807][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:49.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:49.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:49.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:49.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:49.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:49.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:49.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.819][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:49.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:49.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.822][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:49.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.825][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:49.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:49.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:49.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:49.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.834][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:49.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:49.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.840][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:49.841][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:49.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.843][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:49.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:49.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.846][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:49.847][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:49.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:49.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:49.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:49.882][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-04-19 16:02:49.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:49.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:49.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:49.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:49.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:49.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:49.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:49.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:49.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:49.901][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-04-19 16:02:49.902][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:49.903][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2025-04-19 16:02:49.904][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:49.904][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:49.905][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:49.906][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:49.907][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:49.907][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:49.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:49.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:49.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:49.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:49.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:49.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:49.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:49.918][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2025-04-19 16:02:49.920][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:49.921][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:49.922][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2025-04-19 16:02:50.251][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2025-04-19 16:02:50.582][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:50.588][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2025-04-19 16:02:50.595][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2025-04-19 16:02:50.597][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2025-04-19 16:02:50.598][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:50.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:50.600][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:50.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:50.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:50.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:50.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:50.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:50.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:50.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:50.611][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.617][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:50.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:50.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:50.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:50.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.623][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:50.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:50.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:50.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:50.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:50.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:50.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:50.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:50.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:50.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.642][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:50.643][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:50.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.645][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:50.646][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:50.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.648][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:50.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:50.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:50.652][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:50.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:50.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.658][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:50.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:50.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.664][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:50.665][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:50.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:50.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:50.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.670][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:50.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:50.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:50.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:50.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:50.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:50.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:50.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:50.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:50.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:50.706][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-04-19 16:02:50.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:50.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:50.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:50.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:50.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:50.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:50.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:50.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:50.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:50.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:50.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:50.724][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-04-19 16:02:50.725][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:50.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2025-04-19 16:02:50.727][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:50.727][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:50.728][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:50.729][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:50.730][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:50.731][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:50.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:50.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:50.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:50.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:50.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:50.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:50.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:50.741][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2025-04-19 16:02:50.743][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:50.744][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:50.745][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2025-04-19 16:02:51.076][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2025-04-19 16:02:51.413][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:51.415][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2025-04-19 16:02:51.417][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2025-04-19 16:02:51.420][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2025-04-19 16:02:51.421][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:51.422][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:51.422][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:51.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:51.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:51.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:51.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:51.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:51.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:51.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:51.434][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.440][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:51.441][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:51.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:51.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.447][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:51.447][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:51.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:51.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:51.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:51.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:51.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:51.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:51.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.460][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:51.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:51.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:51.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:51.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.466][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:51.467][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:51.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.470][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:51.471][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:51.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.476][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:51.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:51.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:51.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.483][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:51.483][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:51.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.489][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:51.490][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:51.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.496][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:51.496][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:51.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:51.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:51.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:51.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:51.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:51.539][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-04-19 16:02:51.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:51.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:51.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:51.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:51.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:51.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:51.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:51.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:51.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:51.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:51.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:51.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:51.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:51.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:51.557][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-04-19 16:02:51.558][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:51.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2025-04-19 16:02:51.560][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:51.561][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:51.562][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:51.563][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:51.564][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:51.565][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:51.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:51.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:51.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:51.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:51.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:51.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:51.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:51.576][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2025-04-19 16:02:51.578][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:51.578][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:51.579][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2025-04-19 16:02:51.912][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2025-04-19 16:02:52.247][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:52.249][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2025-04-19 16:02:52.252][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2025-04-19 16:02:52.254][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2025-04-19 16:02:52.255][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:52.256][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:52.257][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:52.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:52.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:52.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:52.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:52.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:52.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:52.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:52.268][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:52.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:52.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.274][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:52.275][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:52.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:52.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:52.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.280][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:52.281][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:52.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:52.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:52.287][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:52.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:52.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:52.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:52.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:52.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:52.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.300][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:52.301][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:52.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.303][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:52.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:52.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:52.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.309][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:52.310][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:52.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:52.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.316][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:52.317][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:52.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:52.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:52.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.322][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:52.323][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:52.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.325][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:52.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.328][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:52.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:52.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:52.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:52.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:52.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:52.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:52.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:52.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:52.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:52.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:52.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:52.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:52.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:52.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:52.366][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-04-19 16:02:52.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:52.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:52.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:52.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:52.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:52.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:52.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:52.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:52.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:52.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:52.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:52.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:52.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:52.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:52.385][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-04-19 16:02:52.386][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:52.387][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2025-04-19 16:02:52.388][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:52.389][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:52.390][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:52.391][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:52.391][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:52.392][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:52.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:52.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:52.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:52.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:52.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:52.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:52.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:52.403][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2025-04-19 16:02:52.405][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:52.406][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:52.407][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2025-04-19 16:02:52.740][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2025-04-19 16:02:53.072][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:53.074][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2025-04-19 16:02:53.076][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2025-04-19 16:02:53.078][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2025-04-19 16:02:53.080][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:53.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:53.081][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:53.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:53.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:53.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:53.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:53.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:53.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:53.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:53.092][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.098][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:53.099][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:53.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:53.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:53.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.104][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:53.105][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:53.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.110][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:53.111][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:53.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:53.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:53.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:53.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:53.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:53.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.122][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:53.123][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:53.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.125][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:53.126][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:53.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.129][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:53.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.132][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:53.133][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:53.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:53.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.138][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:53.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:53.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.154][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:53.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:53.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:53.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:53.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:53.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:53.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:53.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:53.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:53.195][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-04-19 16:02:53.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:53.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:53.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:53.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:53.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:53.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:53.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:53.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:53.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:53.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:53.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:53.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:53.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:53.213][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-04-19 16:02:53.214][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:53.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2025-04-19 16:02:53.216][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:53.217][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:53.218][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:53.218][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:53.219][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:53.220][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:53.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:53.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:53.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:53.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:53.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:53.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:53.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:53.231][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2025-04-19 16:02:53.233][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:53.234][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:53.235][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2025-04-19 16:02:53.566][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2025-04-19 16:02:53.898][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:53.900][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2025-04-19 16:02:53.902][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2025-04-19 16:02:53.904][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2025-04-19 16:02:53.905][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:53.906][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:53.907][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:53.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:53.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:53.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:53.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:53.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:53.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:53.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:53.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.923][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:53.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:53.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:53.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:53.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.929][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:53.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:53.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:53.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:53.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:53.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:53.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:53.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:53.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:53.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:53.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:53.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.948][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:53.949][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:53.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.951][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:53.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:53.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.954][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:53.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:53.958][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:53.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:53.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.964][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:53.965][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:53.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.970][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:53.971][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:53.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:53.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:53.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.976][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:53.977][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:53.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:53.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:53.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:53.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:53.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:53.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:53.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:54.010][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-04-19 16:02:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:54.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:54.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:54.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:54.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:54.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:54.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:54.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:54.028][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-04-19 16:02:54.029][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:54.030][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2025-04-19 16:02:54.031][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:54.032][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:54.032][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:54.033][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:54.034][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:54.035][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:54.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:54.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:54.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:54.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:54.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:54.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:54.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:54.045][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2025-04-19 16:02:54.047][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:54.047][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:54.048][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2025-04-19 16:02:54.380][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2025-04-19 16:02:54.725][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:54.727][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2025-04-19 16:02:54.729][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2025-04-19 16:02:54.731][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2025-04-19 16:02:54.733][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:54.734][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:54.734][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:54.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:54.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:54.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:54.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:54.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:54.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:54.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:54.745][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.760][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:54.760][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:54.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.763][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.765][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:54.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:54.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:54.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:54.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:54.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:54.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:54.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:54.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:54.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.783][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:54.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:54.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.785][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:54.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.788][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:54.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:54.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:54.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:54.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.797][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:54.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:54.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:54.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:54.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.802][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:54.803][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:54.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:54.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:54.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:54.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:54.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:54.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:54.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:54.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:54.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:54.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:54.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:54.841][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-04-19 16:02:54.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:54.851][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:54.853][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:54.854][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:54.855][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:02:55.190][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:02:55.803][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:55.804][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2025-04-19 16:02:55.807][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2025-04-19 16:02:55.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:55.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:55.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:55.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:55.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:55.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:55.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:55.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:55.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:55.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:55.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:55.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:55.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:55.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:55.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:55.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:55.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:55.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:55.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:55.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:55.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:55.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:55.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:55.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:55.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:55.836][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-04-19 16:02:55.837][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:55.838][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2025-04-19 16:02:55.839][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:55.840][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:55.840][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:55.841][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:55.842][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:55.843][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:55.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:55.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:55.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:55.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:55.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:55.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:55.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:55.853][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2025-04-19 16:02:55.855][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:55.856][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:55.857][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2025-04-19 16:02:56.189][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2025-04-19 16:02:56.534][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:56.536][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2025-04-19 16:02:56.540][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2025-04-19 16:02:56.542][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2025-04-19 16:02:56.543][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:56.544][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:56.545][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:56.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:56.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:56.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:56.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:56.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:56.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:56.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:56.556][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:56.557][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:56.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:56.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:56.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.563][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:56.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:56.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:56.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:56.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.569][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:56.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:56.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:56.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:56.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:56.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:56.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:56.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.582][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:56.583][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:56.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:56.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:56.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.588][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:56.589][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:56.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.591][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:56.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:56.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.594][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:56.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:56.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.597][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:56.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:56.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:56.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:56.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.603][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:56.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:56.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:56.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.609][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:56.610][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:56.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:56.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:56.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.615][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:56.616][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:56.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:56.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:56.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:56.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:56.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:56.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:56.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:56.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:56.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:56.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:56.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:56.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:56.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:56.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:56.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:56.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:56.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:56.660][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-04-19 16:02:56.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:56.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:56.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:56.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:56.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:56.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:56.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:56.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:56.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:56.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:56.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:56.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:56.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:56.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:56.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:56.678][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-04-19 16:02:56.678][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:56.680][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2025-04-19 16:02:56.681][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:56.682][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:56.682][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:56.683][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:56.684][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:56.685][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:56.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:56.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:56.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:56.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:56.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:56.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:56.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:56.695][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2025-04-19 16:02:56.697][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:56.698][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:56.699][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2025-04-19 16:02:57.032][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2025-04-19 16:02:57.364][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:57.366][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2025-04-19 16:02:57.369][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2025-04-19 16:02:57.371][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2025-04-19 16:02:57.372][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:57.373][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:57.374][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:57.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.385][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.391][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:57.392][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:57.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:57.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:57.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.397][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:57.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:57.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:57.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:57.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:57.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:57.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:57.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:57.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:57.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.416][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:57.417][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:57.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.419][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:57.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:57.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.422][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:57.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:57.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.425][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.431][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:57.432][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:57.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:57.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:57.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.437][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:57.438][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:57.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:57.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:57.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:57.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:57.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:57.479][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-04-19 16:02:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:57.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:57.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:57.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:57.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:57.489][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:02:57.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.506][private$selectFields]
biodb.TRACE[2025-04-19 16:02:57.507][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:57.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:57.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.515][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.515][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.519][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:57.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:02:57.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.545][private$selectFields]
biodb.TRACE[2025-04-19 16:02:57.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:57.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:57.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.555][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.559][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:57.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-19 16:02:57.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.593][private$selectFields]
biodb.TRACE[2025-04-19 16:02:57.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:57.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:57.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.603][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.607][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:57.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.617][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-19 16:02:57.617][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:02:57.618][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:02:57.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:57.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.709][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:57.712][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:57.713][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-19 16:02:57.714][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:57.716][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-19 16:02:57.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:57.721][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:57.722][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-19 16:02:57.723][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:57.724][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-19 16:02:57.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:57.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:57.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:57.780][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:02:57.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.797][private$selectFields]
biodb.TRACE[2025-04-19 16:02:57.798][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:57.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:57.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.806][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.810][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-19 16:02:57.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.870][private$selectFields]
biodb.TRACE[2025-04-19 16:02:57.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:57.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:57.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.886][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.889][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:57.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:02:57.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.914][private$selectFields]
biodb.TRACE[2025-04-19 16:02:57.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:02:57.916][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:02:57.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.923][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:02:57.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.927][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:02:57.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-19 16:02:57.937][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:02:57.938][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:02:57.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.949][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:02:57.952][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:57.952][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:57.954][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:02:58.284][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:02:58.615][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:58.617][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2025-04-19 16:02:58.620][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2025-04-19 16:02:58.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:58.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:58.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:58.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:58.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:58.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:58.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:58.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:58.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:58.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:58.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:58.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:58.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:58.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:58.649][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-04-19 16:02:58.649][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:58.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2025-04-19 16:02:58.652][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:58.652][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:58.653][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:58.654][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:58.655][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:58.656][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:58.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:58.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:58.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:58.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:58.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:58.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:58.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:58.666][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2025-04-19 16:02:58.668][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:58.669][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:58.670][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2025-04-19 16:02:59.098][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2025-04-19 16:02:59.434][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:59.436][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2025-04-19 16:02:59.439][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2025-04-19 16:02:59.441][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2025-04-19 16:02:59.443][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:59.444][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:59.445][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:02:59.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:59.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:59.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:59.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:59.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:59.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:59.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:59.457][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.464][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:59.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:59.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:02:59.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:02:59.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.471][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:59.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:59.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:59.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:59.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.478][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.492][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:59.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:02:59.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.496][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:59.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:59.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:02:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.502][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.509][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.510][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.516][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:59.517][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:59.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:02:59.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:02:59.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:59.523][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:59.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:02:59.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:02:59.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:59.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:59.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:59.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:02:59.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:02:59.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:59.571][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-04-19 16:02:59.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:59.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:59.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:59.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:59.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:59.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:59.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:59.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:59.590][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-04-19 16:02:59.591][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:59.592][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2025-04-19 16:02:59.593][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:59.594][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:59.595][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:59.596][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:02:59.597][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:59.597][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:59.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:59.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:59.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:59.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:59.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:59.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:59.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:59.609][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2025-04-19 16:02:59.611][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:59.612][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:59.613][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2025-04-19 16:02:59.958][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2025-04-19 16:03:00.289][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:00.290][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2025-04-19 16:03:00.293][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2025-04-19 16:03:00.295][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2025-04-19 16:03:00.296][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:00.297][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:00.298][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:00.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:00.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:00.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:00.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:00.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:00.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:00.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:00.309][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:00.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:00.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:00.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:00.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.316][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:00.317][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:00.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:00.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:00.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.323][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:00.324][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:00.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:00.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:00.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.330][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:00.331][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:00.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:00.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:00.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.337][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:00.337][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:00.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:00.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:00.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.343][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:00.344][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:00.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.347][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:00.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.350][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:00.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:00.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:00.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:00.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.360][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:00.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:00.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:00.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:00.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.367][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:00.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:00.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:00.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:00.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.374][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:00.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:00.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:00.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:00.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:00.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:00.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:00.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:00.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:00.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:00.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:00.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:00.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:00.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:00.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:00.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:00.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:00.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:00.412][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-04-19 16:03:00.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:00.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:00.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:00.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:00.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:00.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:00.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:00.422][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:00.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:00.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:00.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:00.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:00.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:00.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:00.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:00.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.441][private$selectFields]
biodb.TRACE[2025-04-19 16:03:00.442][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:00.442][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:00.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.451][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.455][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:00.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.466][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:03:00.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:00.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:00.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:00.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:00.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:00.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:00.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:00.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.483][private$selectFields]
biodb.TRACE[2025-04-19 16:03:00.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:00.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:00.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.493][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.497][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:00.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-19 16:03:00.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:00.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:00.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:00.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:00.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:00.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:00.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:00.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.531][private$selectFields]
biodb.TRACE[2025-04-19 16:03:00.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:00.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:00.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.541][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.542][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:00.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.546][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:00.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:00.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-19 16:03:00.557][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:00.558][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:00.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:00.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:00.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:00.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:00.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:00.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:00.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:00.570][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:00.573][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:00.573][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:00.575][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:03:00.911][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:03:01.242][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:01.244][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2025-04-19 16:03:01.247][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2025-04-19 16:03:01.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:01.258][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-04-19 16:03:01.259][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:01.260][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2025-04-19 16:03:01.261][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:01.262][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:01.263][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:01.263][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:01.264][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:01.265][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:01.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:01.275][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2025-04-19 16:03:01.277][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:01.278][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:01.279][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2025-04-19 16:03:01.610][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2025-04-19 16:03:01.945][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:01.947][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2025-04-19 16:03:01.950][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2025-04-19 16:03:01.952][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2025-04-19 16:03:01.953][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:01.954][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:01.955][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:01.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:01.965][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.972][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:01.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:01.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:01.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.979][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:01.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:01.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:01.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:01.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:01.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:01.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.998][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:01.999][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:01.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:02.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.004][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:02.005][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:02.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.007][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.016][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:02.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:02.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:02.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:02.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:02.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:02.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:02.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:02.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.027][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:02.028][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:02.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:02.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:02.062][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-04-19 16:03:02.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:02.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:02.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:02.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:02.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:02.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:02.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:02.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:02.080][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-04-19 16:03:02.081][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:02.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2025-04-19 16:03:02.083][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:02.084][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:02.085][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:02.086][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:02.086][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:02.087][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:02.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:02.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:02.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:02.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:02.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:02.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:02.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:02.097][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2025-04-19 16:03:02.099][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:02.100][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:02.101][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2025-04-19 16:03:02.434][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2025-04-19 16:03:02.777][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:02.779][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2025-04-19 16:03:02.782][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2025-04-19 16:03:02.784][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2025-04-19 16:03:02.785][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:02.786][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:02.787][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:02.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:02.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:02.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:02.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:02.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:02.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:02.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:02.811][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.818][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:02.819][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:02.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.821][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.824][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:02.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:02.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:02.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:02.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.831][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:02.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:02.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:02.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:02.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.838][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.838][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.844][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:02.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:02.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.847][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:02.848][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:02.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.850][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:02.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:02.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.860][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:02.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:02.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:02.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:02.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.867][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:02.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:02.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:02.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:02.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:02.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:02.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:02.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:02.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:02.910][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-04-19 16:03:02.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:02.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:02.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:02.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:02.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:02.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:02.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:02.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:02.929][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-04-19 16:03:02.930][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:02.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2025-04-19 16:03:02.932][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:02.933][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:02.934][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:02.935][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:02.935][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:02.936][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:02.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:02.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:02.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:02.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:02.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:02.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:02.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:02.947][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2025-04-19 16:03:02.949][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:02.950][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:02.951][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2025-04-19 16:03:03.298][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2025-04-19 16:03:03.644][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:03.646][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2025-04-19 16:03:03.649][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2025-04-19 16:03:03.651][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2025-04-19 16:03:03.653][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:03.654][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:03.655][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:03.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.667][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.673][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:03.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:03.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:03.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:03.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.680][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:03.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:03.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:03.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.686][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:03.687][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:03.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:03.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:03.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:03.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.703][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:03.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.706][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:03.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.709][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.715][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:03.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:03.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:03.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:03.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.722][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:03.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:03.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.725][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:03.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.728][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:03.729][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:03.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:03.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:03.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:03.766][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-04-19 16:03:03.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:03.781][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:03.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.801][private$selectFields]
biodb.TRACE[2025-04-19 16:03:03.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:03.803][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:03.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.811][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.815][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:03.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-19 16:03:03.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.841][private$selectFields]
biodb.TRACE[2025-04-19 16:03:03.842][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:03.843][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:03.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.851][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.854][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.865][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-19 16:03:03.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.881][private$selectFields]
biodb.TRACE[2025-04-19 16:03:03.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:03.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:03.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.891][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:03.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.894][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:03.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:03.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-19 16:03:03.905][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:03.906][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:03.914][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.920][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:03.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:03.926][biodb::testThat]
biodb.INFO [2025-04-19 16:03:03.927][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-04-19 16:03:03.928][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:03.928][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:03.931][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:03.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:03.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:03.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:03.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:03.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:03.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:03.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:03.989][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:03.991][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:03.992][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-19 16:03:03.993][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:03.994][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-19 16:03:03.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.024][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:04.027][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:04.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-19 16:03:04.034][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:04.035][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-19 16:03:04.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.080][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:04.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.098][private$selectFields]
biodb.TRACE[2025-04-19 16:03:04.098][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:04.099][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:04.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.107][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.111][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:04.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.122][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-19 16:03:04.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.138][private$selectFields]
biodb.TRACE[2025-04-19 16:03:04.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:04.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:04.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.148][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.152][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:03:04.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.181][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.182][private$selectFields]
biodb.TRACE[2025-04-19 16:03:04.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:04.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:04.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.193][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.197][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:04.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-19 16:03:04.208][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:04.208][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:04.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:04.221][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:04.223][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:04.224][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-19 16:03:04.225][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:04.227][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-19 16:03:04.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:04.270][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:04.271][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-19 16:03:04.272][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:04.273][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-19 16:03:04.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.332][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:04.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.350][private$selectFields]
biodb.TRACE[2025-04-19 16:03:04.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:04.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:04.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.360][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.364][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:04.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.380][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:03:04.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.397][private$selectFields]
biodb.TRACE[2025-04-19 16:03:04.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:04.398][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:04.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.407][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.410][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:04.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-19 16:03:04.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.437][private$selectFields]
biodb.TRACE[2025-04-19 16:03:04.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:04.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:04.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.447][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:04.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.451][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:04.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:04.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-19 16:03:04.462][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:04.463][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:04.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:04.475][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:04.477][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:04.478][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-19 16:03:04.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:04.480][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-19 16:03:04.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.538][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:04.540][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:04.541][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:04.542][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:03:04.877][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:03:05.392][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:05.393][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2025-04-19 16:03:05.397][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2025-04-19 16:03:05.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:05.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:05.429][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-04-19 16:03:05.430][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:05.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2025-04-19 16:03:05.432][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:05.433][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:05.434][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:05.435][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:05.436][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:05.436][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:05.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:05.448][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2025-04-19 16:03:05.450][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:05.451][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:05.452][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2025-04-19 16:03:05.785][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2025-04-19 16:03:06.138][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:06.140][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2025-04-19 16:03:06.143][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2025-04-19 16:03:06.145][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2025-04-19 16:03:06.146][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:06.147][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:06.148][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:06.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:06.159][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.165][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:06.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:06.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:06.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:06.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.171][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:06.172][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:06.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:06.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:06.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.177][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:06.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:06.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:06.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:06.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.184][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.200][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:06.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:06.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.203][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:06.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:06.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.206][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:06.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.209][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:06.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.218][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:06.219][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:06.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:06.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.224][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:06.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:06.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.227][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:06.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:06.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.230][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:06.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:06.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:06.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:06.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:06.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:06.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:06.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:06.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:06.289][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-04-19 16:03:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:06.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:06.308][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-04-19 16:03:06.308][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:06.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2025-04-19 16:03:06.310][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:06.311][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:06.312][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:06.313][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:06.314][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:06.314][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:06.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:06.326][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2025-04-19 16:03:06.328][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:06.328][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:06.329][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2025-04-19 16:03:06.662][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2025-04-19 16:03:06.998][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:07.000][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2025-04-19 16:03:07.003][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2025-04-19 16:03:07.005][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2025-04-19 16:03:07.006][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:07.007][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:07.007][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:07.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:07.018][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.024][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:07.025][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:07.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:07.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:07.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.030][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:07.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:07.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:07.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:07.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:07.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:07.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:07.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:07.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.049][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:07.049][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:07.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.052][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:07.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.055][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:07.055][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.058][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:07.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.060][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.066][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:07.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:07.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:07.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.073][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:07.074][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:07.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:07.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:07.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:07.080][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:07.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:07.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:07.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:07.114][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-04-19 16:03:07.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:07.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:07.140][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-04-19 16:03:07.141][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:07.142][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2025-04-19 16:03:07.143][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:07.144][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:07.145][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:07.145][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:07.146][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:07.147][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:07.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:07.157][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2025-04-19 16:03:07.159][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:07.160][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:07.161][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2025-04-19 16:03:07.492][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2025-04-19 16:03:07.826][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:07.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2025-04-19 16:03:07.831][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2025-04-19 16:03:07.833][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2025-04-19 16:03:07.834][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:07.835][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:07.836][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:07.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:07.847][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.854][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:07.855][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:07.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:07.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:07.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.860][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:07.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:07.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:07.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:07.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:07.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:07.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.879][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:07.880][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:07.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.882][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:07.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:07.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.886][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:07.886][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.898][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:07.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:07.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:07.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:07.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.905][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:07.905][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:07.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:07.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:07.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.911][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:07.912][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:07.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:07.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:07.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:07.948][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-04-19 16:03:07.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:07.958][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:07.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:07.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:07.975][private$selectFields]
biodb.TRACE[2025-04-19 16:03:07.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:07.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:07.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:07.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:07.985][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:07.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.989][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:07.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:07.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.999][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:03:08.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.016][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.025][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.029][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:08.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-04-19 16:03:08.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.056][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.057][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.073][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.077][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.086][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-04-19 16:03:08.087][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:08.088][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:08.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:08.141][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:08.143][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:08.144][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-19 16:03:08.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:08.146][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-19 16:03:08.149][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:08.151][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:08.152][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-19 16:03:08.153][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:08.154][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-19 16:03:08.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:08.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:08.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:08.210][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:08.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.227][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.227][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.229][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.237][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.240][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:08.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-19 16:03:08.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.266][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.276][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.280][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:08.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:03:08.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.306][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.307][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.308][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.317][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:08.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.320][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:08.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:08.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-19 16:03:08.332][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:08.332][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:08.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:08.349][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:08.351][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:08.352][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:08.354][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:03:08.690][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:03:09.028][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:09.030][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2025-04-19 16:03:09.033][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2025-04-19 16:03:09.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:09.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:09.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:09.079][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-04-19 16:03:09.079][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:09.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2025-04-19 16:03:09.082][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:09.082][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:09.083][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:09.084][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:09.085][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:09.085][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:09.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:09.096][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2025-04-19 16:03:09.098][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:09.099][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:09.100][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2025-04-19 16:03:09.431][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2025-04-19 16:03:09.767][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:09.768][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2025-04-19 16:03:09.771][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2025-04-19 16:03:09.773][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2025-04-19 16:03:09.774][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:09.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:09.776][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:09.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.786][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.793][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:09.793][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:09.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:09.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:09.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.798][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:09.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:09.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:09.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:09.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:09.805][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:09.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.811][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.816][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:09.817][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:09.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.820][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:09.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.823][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:09.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:09.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.826][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:09.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.829][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.830][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.835][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:09.835][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:09.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:09.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.841][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:09.841][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:09.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.844][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:09.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:09.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.847][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:09.847][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:09.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:09.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:09.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:09.882][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-04-19 16:03:09.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:09.891][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:09.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:09.908][private$selectFields]
biodb.TRACE[2025-04-19 16:03:09.908][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:09.909][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:09.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:09.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:09.916][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:09.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.920][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-19 16:03:09.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:09.955][private$selectFields]
biodb.TRACE[2025-04-19 16:03:09.956][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:09.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:09.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:09.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:09.964][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:09.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-19 16:03:09.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:09.992][private$selectFields]
biodb.TRACE[2025-04-19 16:03:09.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:09.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:09.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:09.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:09.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:10.000][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:10.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.004][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:10.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.013][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-04-19 16:03:10.014][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:10.014][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:10.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:10.025][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:10.027][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:10.028][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-19 16:03:10.029][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:10.030][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-19 16:03:10.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:10.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:10.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:10.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:10.091][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-04-19 16:03:10.092][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:10.093][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2025-04-19 16:03:10.094][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:10.095][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:10.096][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:10.096][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:10.097][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:10.098][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:10.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:10.108][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2025-04-19 16:03:10.110][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:10.111][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:10.112][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2025-04-19 16:03:10.447][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2025-04-19 16:03:10.815][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:10.817][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2025-04-19 16:03:10.819][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2025-04-19 16:03:10.821][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2025-04-19 16:03:10.822][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:10.823][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:10.824][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:10.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.835][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.841][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:10.841][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:10.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:10.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:10.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.847][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:10.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:10.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:10.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:10.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:10.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:10.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:10.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:10.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.860][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:10.866][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:10.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.869][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:10.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:10.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.872][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.882][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:10.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:10.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:10.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:10.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.888][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:10.888][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:10.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:10.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.893][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:10.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:10.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.896][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:10.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:10.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:10.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:10.935][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-04-19 16:03:10.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:10.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:10.953][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-04-19 16:03:10.953][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:10.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2025-04-19 16:03:10.955][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:10.956][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:10.957][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:10.958][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:10.959][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:10.960][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:10.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:10.970][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2025-04-19 16:03:10.972][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:10.972][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:10.973][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2025-04-19 16:03:11.303][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2025-04-19 16:03:11.645][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:11.647][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2025-04-19 16:03:11.649][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2025-04-19 16:03:11.651][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2025-04-19 16:03:11.652][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:11.653][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:11.654][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:11.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:11.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:11.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:11.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:11.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:11.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:11.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:11.664][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.670][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:11.671][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:11.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:11.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:11.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.676][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:11.677][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:11.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:11.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:11.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:11.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:11.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:11.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:11.688][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:11.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:11.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:11.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.694][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:11.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:11.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.696][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:11.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:11.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.699][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:11.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:11.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.708][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:11.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:11.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:11.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:11.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.715][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:11.715][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:11.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:11.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:11.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.721][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:11.721][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:11.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:11.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:11.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:11.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:11.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:11.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:11.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:11.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:11.755][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-04-19 16:03:11.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:11.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:11.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:11.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:11.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:11.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:11.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:11.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:11.773][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-04-19 16:03:11.774][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:11.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2025-04-19 16:03:11.776][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:11.777][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:11.777][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:11.778][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:11.779][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:11.780][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:11.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:11.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:11.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:11.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:11.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:11.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:11.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:11.790][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2025-04-19 16:03:11.792][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:11.793][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:11.794][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2025-04-19 16:03:12.124][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2025-04-19 16:03:12.545][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:12.547][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2025-04-19 16:03:12.550][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2025-04-19 16:03:12.552][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2025-04-19 16:03:12.553][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:12.554][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:12.555][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:12.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:12.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:12.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:12.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:12.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:12.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:12.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:12.567][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.573][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:12.574][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:12.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:12.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:12.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.579][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:12.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:12.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:12.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:12.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:12.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:12.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.592][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.593][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.608][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:12.609][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:12.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:12.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.615][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:12.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:12.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.618][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:12.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:12.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.627][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:12.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:12.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:12.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:12.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.634][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:12.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:12.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:12.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:12.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:12.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:12.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:12.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:12.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:12.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:12.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:12.676][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-04-19 16:03:12.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:12.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:12.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:12.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:12.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:12.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:12.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:12.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:12.696][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-04-19 16:03:12.696][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:12.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2025-04-19 16:03:12.699][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:12.700][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:12.700][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:12.701][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:12.702][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:12.703][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:12.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:12.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:12.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:12.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:12.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:12.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:12.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:12.713][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2025-04-19 16:03:12.715][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:12.716][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:12.717][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2025-04-19 16:03:13.050][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2025-04-19 16:03:13.403][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:13.405][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2025-04-19 16:03:13.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2025-04-19 16:03:13.409][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2025-04-19 16:03:13.410][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:13.411][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:13.412][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:13.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.422][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:13.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:13.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.428][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:13.429][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:13.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:13.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:13.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.434][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:13.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:13.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:13.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:13.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.440][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:13.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:13.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:13.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:13.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.446][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:13.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:13.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:13.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:13.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:13.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:13.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.455][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:13.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:13.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.458][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:13.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:13.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.467][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:13.468][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:13.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:13.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:13.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.473][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:13.474][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:13.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:13.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:13.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.480][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:13.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:13.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:13.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:13.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:13.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:13.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:13.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:13.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:13.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:13.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:13.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:13.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:13.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:13.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:13.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:13.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:13.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:13.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:13.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:13.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:13.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:13.515][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-04-19 16:03:13.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:13.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:13.533][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-04-19 16:03:13.533][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:13.535][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2025-04-19 16:03:13.536][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:13.536][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:13.537][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:13.538][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:13.539][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:13.539][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:13.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:13.550][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2025-04-19 16:03:13.552][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:13.553][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:13.554][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2025-04-19 16:03:13.895][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2025-04-19 16:03:14.233][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:14.234][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2025-04-19 16:03:14.237][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2025-04-19 16:03:14.240][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2025-04-19 16:03:14.241][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:14.242][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:14.243][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:14.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:14.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:14.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:14.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:14.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:14.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:14.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:14.254][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.260][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:14.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:14.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.263][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:14.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:14.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.266][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:14.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:14.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:14.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:14.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:14.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:14.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:14.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:14.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:14.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:14.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:14.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.288][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:14.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:14.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.291][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:14.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:14.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.300][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:14.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:14.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:14.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.306][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:14.307][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:14.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.309][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:14.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.312][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:14.313][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:14.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:14.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:14.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:14.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:14.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:14.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:14.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:14.348][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-04-19 16:03:14.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:14.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:14.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:14.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:14.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:14.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:14.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:14.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:14.366][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-04-19 16:03:14.367][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:14.368][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2025-04-19 16:03:14.369][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:14.370][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:14.371][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:14.371][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:14.372][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:14.373][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:14.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:14.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:14.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:14.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:14.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:14.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:14.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:14.383][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2025-04-19 16:03:14.386][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:14.386][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:14.387][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2025-04-19 16:03:14.720][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2025-04-19 16:03:15.071][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:15.072][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2025-04-19 16:03:15.075][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2025-04-19 16:03:15.077][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2025-04-19 16:03:15.078][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:15.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:15.081][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:15.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.097][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:15.098][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:15.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:15.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:15.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.104][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:15.105][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:15.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:15.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.110][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:15.111][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:15.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:15.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:15.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.123][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:15.124][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:15.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.126][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:15.127][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:15.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.129][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:15.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:15.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.132][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.133][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.138][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:15.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:15.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:15.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:15.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.144][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:15.145][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:15.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:15.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:15.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.151][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:15.152][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:15.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:15.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:15.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:15.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:15.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:15.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:15.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:15.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:15.199][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-04-19 16:03:15.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:15.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:15.217][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-04-19 16:03:15.218][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:15.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2025-04-19 16:03:15.220][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:15.221][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:15.222][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:15.222][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:15.223][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:15.224][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:15.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:15.235][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2025-04-19 16:03:15.237][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:15.237][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:15.239][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2025-04-19 16:03:15.571][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2025-04-19 16:03:15.904][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:15.906][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2025-04-19 16:03:15.908][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2025-04-19 16:03:15.910][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2025-04-19 16:03:15.912][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:15.913][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:15.914][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:15.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.925][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.931][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:15.932][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:15.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:15.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.938][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:15.938][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:15.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:15.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:15.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:15.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:15.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:15.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:15.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.957][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:15.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:15.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.960][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:15.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:15.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.963][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:15.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:15.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.972][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:15.973][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:15.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:15.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:15.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.978][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:15.979][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:15.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.981][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:15.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.984][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:15.985][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:15.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:15.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:15.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:15.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:15.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:15.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:15.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:16.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:16.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:16.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:16.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:16.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:16.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:16.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:16.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:16.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:16.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:16.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:16.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.022][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-04-19 16:03:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:16.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:16.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:16.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:16.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:16.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:16.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.032][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:16.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.048][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.049][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.050][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.051][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.058][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.059][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.063][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-19 16:03:16.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.090][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.090][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.100][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.103][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.114][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-04-19 16:03:16.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.138][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.138][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.139][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.147][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.151][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-04-19 16:03:16.161][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:16.162][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:16.169][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:16.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:16.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.172][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:16.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:16.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.175][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:16.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:16.181][biodb::testThat]
biodb.INFO [2025-04-19 16:03:16.182][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-04-19 16:03:16.183][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:16.183][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:16.186][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:16.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:16.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.189][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:16.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:16.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.192][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:16.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:16.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:16.253][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:16.256][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.257][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-19 16:03:16.258][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.259][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-19 16:03:16.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:16.282][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-19 16:03:16.284][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.285][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-19 16:03:16.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.325][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:16.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.343][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.344][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.344][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.353][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.357][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-19 16:03:16.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.385][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.396][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.400][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:03:16.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.433][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.434][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.443][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.447][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-19 16:03:16.458][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:16.459][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:16.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:16.471][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:16.473][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.474][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-19 16:03:16.475][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.476][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-19 16:03:16.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.516][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:16.518][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.519][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-19 16:03:16.520][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.521][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-19 16:03:16.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.577][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:16.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.594][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.603][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.604][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.607][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:03:16.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.634][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.641][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.644][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.648][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.659][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-19 16:03:16.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.675][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.676][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.684][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.688][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.703][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-19 16:03:16.703][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:16.704][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:16.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:16.715][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:16.718][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.719][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-19 16:03:16.720][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.721][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-19 16:03:16.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.863][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:16.865][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.866][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-19 16:03:16.867][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.868][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-19 16:03:16.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:16.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:16.923][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:16.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.940][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.940][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.941][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.949][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.949][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.953][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:03:16.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.985][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.986][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.987][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.994][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:16.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.998][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:16.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:16.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.007][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-19 16:03:17.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.023][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.036][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:17.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-19 16:03:17.047][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:17.048][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:17.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:17.114][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:17.116][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:17.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-19 16:03:17.118][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:17.119][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-19 16:03:17.121][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:17.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:17.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-19 16:03:17.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:17.127][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-19 16:03:17.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.182][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:17.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.198][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.199][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.200][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.208][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.211][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:17.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.221][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-19 16:03:17.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.237][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.238][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.238][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.252][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.255][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:17.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:03:17.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.281][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.281][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.282][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.284][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.289][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.293][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:17.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-19 16:03:17.303][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:17.304][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:17.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:17.315][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:17.317][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:17.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-19 16:03:17.319][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:17.320][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-19 16:03:17.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.375][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:17.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.392][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.392][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.393][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.402][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.405][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:17.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:03:17.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.433][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.443][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.446][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:17.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-19 16:03:17.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.474][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.475][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.476][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.484][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.488][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:17.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-19 16:03:17.500][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:17.501][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:17.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:17.512][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:17.539][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:17.541][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-19 16:03:17.542][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:17.543][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-19 16:03:17.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.598][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:17.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.615][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.624][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.628][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:17.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.638][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-19 16:03:17.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.654][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.665][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:17.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-19 16:03:17.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.697][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.707][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:17.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.711][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:17.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:17.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.721][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-19 16:03:17.722][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:17.722][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:17.739][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:17.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:17.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.743][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:17.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:17.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.752][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.755][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.756][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.758][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:17.759][biodb::testThat]
biodb.INFO [2025-04-19 16:03:17.760][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-04-19 16:03:17.761][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:17.761][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:17.764][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:17.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:17.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.767][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:17.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:17.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.770][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:17.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:17.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:17.829][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:17.832][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:17.832][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:17.834][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:03:18.169][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:03:18.675][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:18.677][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2025-04-19 16:03:18.680][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2025-04-19 16:03:18.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:18.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:18.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:18.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:18.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:18.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:18.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:18.692][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-04-19 16:03:18.693][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:18.694][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2025-04-19 16:03:18.695][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:18.696][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:18.697][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:18.697][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:18.698][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:18.699][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:18.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:18.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:18.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:18.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:18.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:18.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:18.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:18.710][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2025-04-19 16:03:18.712][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:18.713][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:18.714][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2025-04-19 16:03:19.054][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2025-04-19 16:03:19.408][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:19.410][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2025-04-19 16:03:19.413][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2025-04-19 16:03:19.415][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2025-04-19 16:03:19.416][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:19.417][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:19.418][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:19.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:19.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:19.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:19.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:19.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:19.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:19.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:19.428][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.434][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:19.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:19.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:19.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:19.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.440][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.447][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.448][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.460][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:19.461][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:19.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.466][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:19.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:19.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.478][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.484][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:19.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:19.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.487][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:19.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:19.491][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:19.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:19.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:19.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:19.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:19.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:19.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:19.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:19.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:19.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:19.551][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-04-19 16:03:19.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:19.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:19.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:19.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:19.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:19.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:19.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:19.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:19.570][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-04-19 16:03:19.570][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:19.572][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2025-04-19 16:03:19.573][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:19.574][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:19.574][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:19.575][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:19.576][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:19.577][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:19.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:19.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:19.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:19.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:19.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:19.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:19.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:19.587][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2025-04-19 16:03:19.589][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:19.590][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:19.591][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2025-04-19 16:03:19.921][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2025-04-19 16:03:20.254][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:20.256][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2025-04-19 16:03:20.258][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2025-04-19 16:03:20.260][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2025-04-19 16:03:20.261][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:20.262][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:20.263][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:20.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:20.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:20.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:20.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:20.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:20.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:20.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:20.274][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.293][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:20.294][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:20.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:20.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:20.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.300][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.318][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:20.318][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:20.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:20.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:20.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.324][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:20.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.342][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:20.343][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:20.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:20.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:20.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:20.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:20.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:20.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:20.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:20.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:20.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:20.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:20.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:20.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:20.383][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-04-19 16:03:20.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:20.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:20.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:20.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:20.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:20.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:20.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:20.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:20.402][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-04-19 16:03:20.402][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:20.404][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2025-04-19 16:03:20.404][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:20.405][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:20.406][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:20.407][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:20.407][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:20.408][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:20.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:20.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:20.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:20.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:20.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:20.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:20.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:20.419][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2025-04-19 16:03:20.421][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:20.422][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:20.423][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2025-04-19 16:03:20.755][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2025-04-19 16:03:21.112][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:21.114][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2025-04-19 16:03:21.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2025-04-19 16:03:21.119][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2025-04-19 16:03:21.120][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:21.121][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:21.122][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:21.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:21.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:21.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:21.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:21.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:21.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:21.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:21.133][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.139][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:21.140][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:21.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:21.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:21.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.146][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.147][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.165][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:21.166][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:21.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.169][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:21.169][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.172][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:21.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.182][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.188][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:21.189][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:21.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.192][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:21.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:21.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:21.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:21.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:21.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:21.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:21.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:21.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:21.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:21.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:21.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:21.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:21.232][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-04-19 16:03:21.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:21.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:21.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:21.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:21.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:21.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:21.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:21.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:21.258][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-04-19 16:03:21.259][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:21.260][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2025-04-19 16:03:21.261][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:21.262][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:21.262][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:21.263][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:21.264][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:21.265][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:21.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:21.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:21.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:21.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:21.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:21.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:21.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:21.275][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2025-04-19 16:03:21.277][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:21.278][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:21.279][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2025-04-19 16:03:21.609][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2025-04-19 16:03:21.940][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:21.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2025-04-19 16:03:21.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2025-04-19 16:03:21.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2025-04-19 16:03:21.947][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:21.948][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:21.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:21.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:21.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:21.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:21.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:21.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:21.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:21.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:21.960][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.966][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:21.967][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:21.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:21.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:21.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.972][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.985][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.986][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.991][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:21.992][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:21.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.994][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:21.995][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.998][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:21.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.007][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.013][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:22.014][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:22.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:22.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:22.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.020][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:22.020][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:22.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:22.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:22.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:22.056][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-04-19 16:03:22.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:22.067][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:22.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:22.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:22.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:22.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:22.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:22.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:22.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:22.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.084][private$selectFields]
biodb.TRACE[2025-04-19 16:03:22.085][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:22.086][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:22.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.094][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.098][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:22.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.109][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-19 16:03:22.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:22.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:22.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:22.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:22.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:22.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:22.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.126][private$selectFields]
biodb.TRACE[2025-04-19 16:03:22.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:22.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:22.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.136][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.140][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:22.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-04-19 16:03:22.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:22.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:22.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:22.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:22.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:22.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:22.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:22.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.167][private$selectFields]
biodb.TRACE[2025-04-19 16:03:22.168][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:22.168][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:22.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.177][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:22.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:22.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:22.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.199][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-04-19 16:03:22.200][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:22.200][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:22.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:22.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:22.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:22.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:22.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:22.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:22.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:22.212][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:22.214][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:22.215][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:22.216][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:03:22.547][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:03:22.890][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:22.892][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2025-04-19 16:03:22.895][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2025-04-19 16:03:22.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:22.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:22.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:22.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:22.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:22.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:22.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:22.906][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-04-19 16:03:22.907][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:22.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2025-04-19 16:03:22.909][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:22.910][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:22.911][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:22.911][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:22.912][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:22.913][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:22.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:22.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:22.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:22.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:22.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:22.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:22.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:22.923][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2025-04-19 16:03:22.925][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:22.926][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:22.927][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2025-04-19 16:03:23.259][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2025-04-19 16:03:23.593][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:23.595][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2025-04-19 16:03:23.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2025-04-19 16:03:23.600][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2025-04-19 16:03:23.601][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:23.602][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:23.603][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:23.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:23.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:23.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:23.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:23.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:23.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:23.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:23.615][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.615][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.621][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:23.622][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:23.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.625][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:23.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:23.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.628][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.643][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.649][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:23.650][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:23.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.652][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:23.653][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.656][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:23.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.659][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.660][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.665][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:23.673][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:23.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:23.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:23.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:23.679][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:23.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:23.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:23.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:23.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:23.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:23.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:23.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:23.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:23.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:23.715][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-04-19 16:03:23.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:23.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:23.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:23.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:23.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:23.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:23.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:23.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:23.734][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-04-19 16:03:23.734][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:23.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2025-04-19 16:03:23.736][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:23.737][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:23.738][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:23.739][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:23.740][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:23.740][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:23.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:23.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:23.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:23.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:23.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:23.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:23.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:23.752][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2025-04-19 16:03:23.754][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:23.755][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:23.756][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2025-04-19 16:03:24.093][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2025-04-19 16:03:24.442][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:24.443][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2025-04-19 16:03:24.446][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2025-04-19 16:03:24.449][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2025-04-19 16:03:24.450][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:24.451][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:24.452][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:24.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:24.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:24.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:24.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:24.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:24.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:24.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:24.463][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.469][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:24.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:24.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.472][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:24.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:24.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.475][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.507][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:24.508][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:24.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.510][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:24.511][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.513][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:24.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.522][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.528][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:24.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:24.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.531][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:24.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:24.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:24.534][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:24.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:24.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:24.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:24.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:24.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:24.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:24.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:24.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:24.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:24.569][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-04-19 16:03:24.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:24.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:24.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:24.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:24.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:24.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:24.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:24.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:24.590][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-04-19 16:03:24.592][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:24.593][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2025-04-19 16:03:24.594][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:24.595][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:24.596][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:24.597][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:24.598][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:24.598][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:24.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:24.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:24.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:24.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:24.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:24.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:24.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:24.609][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2025-04-19 16:03:24.611][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:24.612][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:24.613][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2025-04-19 16:03:24.944][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2025-04-19 16:03:25.280][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:25.281][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2025-04-19 16:03:25.284][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2025-04-19 16:03:25.287][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2025-04-19 16:03:25.288][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:25.289][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:25.290][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:25.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:25.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:25.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:25.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:25.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:25.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:25.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:25.301][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.308][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:25.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:25.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.311][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:25.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:25.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.314][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.315][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.327][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.328][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:25.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:25.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.336][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:25.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.339][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.349][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.355][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:25.356][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:25.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:25.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.362][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:25.362][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:25.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:25.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:25.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:25.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:25.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:25.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:25.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:25.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:25.399][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-04-19 16:03:25.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:25.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:25.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:25.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:25.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:25.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:25.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:25.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:25.418][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-04-19 16:03:25.419][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:25.420][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2025-04-19 16:03:25.421][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:25.422][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:25.423][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:25.424][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:25.425][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:25.426][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:25.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:25.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:25.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:25.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:25.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:25.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:25.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:25.445][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2025-04-19 16:03:25.447][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:25.447][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:25.448][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2025-04-19 16:03:25.780][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2025-04-19 16:03:26.116][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:26.118][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2025-04-19 16:03:26.121][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2025-04-19 16:03:26.123][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2025-04-19 16:03:26.124][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:26.125][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:26.126][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:26.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:26.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:26.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:26.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:26.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:26.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:26.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:26.137][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.143][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:26.143][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:26.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.146][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:26.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.149][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:26.168][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:26.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.170][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:26.171][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.173][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:26.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.183][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.189][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:26.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:26.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.192][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:26.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:26.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:26.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:26.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:26.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:26.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:26.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:26.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:26.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:26.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:26.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:26.231][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-04-19 16:03:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:26.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:26.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:26.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:26.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:26.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:26.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:26.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:26.249][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-04-19 16:03:26.250][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:26.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2025-04-19 16:03:26.253][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:26.253][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:26.254][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:26.255][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:26.256][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:26.256][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:26.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:26.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:26.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:26.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:26.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:26.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:26.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:26.268][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2025-04-19 16:03:26.270][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:26.271][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:26.272][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2025-04-19 16:03:26.610][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2025-04-19 16:03:26.944][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:26.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2025-04-19 16:03:26.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2025-04-19 16:03:26.951][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2025-04-19 16:03:26.952][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:26.953][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:26.954][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:26.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:26.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:26.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:26.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:26.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:26.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:26.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:26.965][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.972][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:26.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:26.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:26.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:26.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.978][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:27.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:27.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.002][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:27.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:27.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.006][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:27.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.026][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:27.026][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:27.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:27.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:27.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:27.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:27.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:27.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:27.079][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-04-19 16:03:27.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:27.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:27.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:27.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:27.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:27.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:27.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.098][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-04-19 16:03:27.098][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:27.099][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2025-04-19 16:03:27.100][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:27.101][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:27.102][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:27.103][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:27.103][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:27.104][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:27.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:27.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:27.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:27.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:27.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:27.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.115][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2025-04-19 16:03:27.117][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:27.118][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:27.119][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2025-04-19 16:03:27.454][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2025-04-19 16:03:27.792][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:27.794][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2025-04-19 16:03:27.797][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2025-04-19 16:03:27.799][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2025-04-19 16:03:27.801][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:27.801][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:27.802][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:27.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:27.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:27.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:27.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:27.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:27.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:27.814][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.820][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:27.821][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:27.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:27.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:27.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.827][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.847][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:27.848][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:27.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.850][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:27.851][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.853][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:27.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.863][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.870][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:27.871][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:27.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:27.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:27.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:27.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:27.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:27.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:27.914][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-04-19 16:03:27.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:27.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:27.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:27.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:27.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:27.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:27.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.932][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-04-19 16:03:27.933][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:27.934][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2025-04-19 16:03:27.935][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:27.936][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:27.937][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:27.938][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:27.939][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:27.939][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:27.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:27.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:27.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:27.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:27.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:27.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.950][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2025-04-19 16:03:27.952][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:27.953][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:27.954][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2025-04-19 16:03:28.286][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2025-04-19 16:03:28.672][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:28.673][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2025-04-19 16:03:28.677][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2025-04-19 16:03:28.679][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2025-04-19 16:03:28.680][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:28.681][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:28.682][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:28.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:28.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:28.694][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.701][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:28.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:28.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:28.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:28.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.720][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:28.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:28.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:28.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:28.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:28.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:28.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:28.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:28.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.733][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:28.734][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:28.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:28.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:28.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.750][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:28.751][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:28.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.754][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:28.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.757][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:28.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:28.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.760][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:28.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:28.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:28.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:28.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:28.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:28.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.770][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:28.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:28.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:28.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.776][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:28.777][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:28.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:28.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:28.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:28.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:28.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:28.819][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-04-19 16:03:28.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:28.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:28.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:28.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:28.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:28.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:28.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:28.829][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:28.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:28.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:28.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.848][private$selectFields]
biodb.TRACE[2025-04-19 16:03:28.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:28.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:28.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.858][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.862][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:28.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.872][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-04-19 16:03:28.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:28.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:28.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.889][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.889][private$selectFields]
biodb.TRACE[2025-04-19 16:03:28.890][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:28.891][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:28.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.900][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.903][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:28.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.914][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-04-19 16:03:28.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:28.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:28.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.932][private$selectFields]
biodb.TRACE[2025-04-19 16:03:28.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:28.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:28.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:28.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:28.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:28.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-04-19 16:03:28.957][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:28.958][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:28.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:28.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.970][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:28.973][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:28.974][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:28.975][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:03:29.327][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:03:29.706][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:29.708][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2025-04-19 16:03:29.711][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2025-04-19 16:03:29.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:29.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:29.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:29.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:29.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:29.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:29.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:29.723][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-04-19 16:03:29.724][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:29.725][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2025-04-19 16:03:29.726][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:29.727][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:29.728][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:29.728][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:29.729][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:29.730][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:29.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:29.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:29.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:29.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:29.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:29.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:29.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:29.741][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2025-04-19 16:03:29.743][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:29.743][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:29.745][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2025-04-19 16:03:30.075][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2025-04-19 16:03:30.453][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:30.455][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2025-04-19 16:03:30.458][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2025-04-19 16:03:30.460][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2025-04-19 16:03:30.472][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:30.473][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:30.474][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:30.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:30.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:30.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:30.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:30.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:30.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:30.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:30.486][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:30.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:30.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:30.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:30.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.493][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:30.494][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:30.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.496][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.499][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:30.500][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:30.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:30.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:30.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:30.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:30.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:30.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:30.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:30.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:30.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.518][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:30.519][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:30.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.521][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:30.522][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:30.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.524][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:30.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:30.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:30.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:30.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:30.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.534][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:30.535][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:30.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.540][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:30.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:30.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.543][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:30.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.546][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:30.547][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:30.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:30.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:30.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:30.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:30.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:30.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:30.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:30.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:30.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:30.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:30.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:30.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:30.583][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-04-19 16:03:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:30.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:30.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:30.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:30.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:30.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:30.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:30.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:30.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:30.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:30.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:30.602][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-04-19 16:03:30.602][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:30.604][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2025-04-19 16:03:30.605][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:30.606][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:30.606][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:30.607][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:30.608][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:30.609][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:30.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:30.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:30.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:30.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:30.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:30.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:30.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:30.621][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2025-04-19 16:03:30.623][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:30.624][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:30.625][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2025-04-19 16:03:30.960][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2025-04-19 16:03:31.292][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:31.301][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2025-04-19 16:03:31.312][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2025-04-19 16:03:31.315][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2025-04-19 16:03:31.317][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:31.318][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:31.321][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:31.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:31.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:31.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:31.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:31.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:31.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:31.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:31.333][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:31.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:31.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.339][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:31.340][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:31.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.346][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:31.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:31.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:31.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:31.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.359][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:31.360][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:31.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:31.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:31.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.365][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:31.366][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:31.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.369][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:31.370][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:31.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:31.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:31.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:31.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:31.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.382][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:31.383][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:31.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:31.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:31.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.388][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:31.389][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:31.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.395][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:31.396][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:31.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:31.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:31.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:31.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:31.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:31.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:31.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:31.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:31.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:31.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:31.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:31.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:31.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:31.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:31.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:31.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:31.441][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-04-19 16:03:31.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:31.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:31.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:31.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:31.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:31.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:31.454][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:31.455][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:31.456][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:03:31.977][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:03:32.308][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:32.310][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2025-04-19 16:03:32.313][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2025-04-19 16:03:32.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:32.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:32.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:32.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:32.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:32.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:32.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:32.324][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-04-19 16:03:32.325][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:32.326][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2025-04-19 16:03:32.327][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:32.327][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:32.328][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:32.329][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:32.330][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:32.331][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:32.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:32.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:32.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:32.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:32.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:32.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:32.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:32.341][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2025-04-19 16:03:32.344][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:32.344][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:32.345][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2025-04-19 16:03:32.677][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2025-04-19 16:03:33.012][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:33.014][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2025-04-19 16:03:33.017][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2025-04-19 16:03:33.019][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2025-04-19 16:03:33.021][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:33.021][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:33.022][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:33.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:33.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:33.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:33.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:33.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:33.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:33.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:33.034][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.041][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:33.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:33.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:33.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.047][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:33.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:33.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:33.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:33.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:33.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:33.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:33.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:33.061][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:33.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:33.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:33.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:33.068][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:33.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.070][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:33.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:33.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.074][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:33.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:33.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:33.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:33.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:33.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.086][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:33.087][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:33.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:33.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:33.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.093][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:33.094][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:33.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.097][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:33.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:33.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.100][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:33.101][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:33.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:33.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:33.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:33.139][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-04-19 16:03:33.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:33.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:33.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:33.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:33.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:33.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:33.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:33.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:33.158][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-04-19 16:03:33.159][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:33.160][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2025-04-19 16:03:33.161][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:33.162][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:33.163][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:33.164][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:33.165][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:33.165][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:33.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:33.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:33.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:33.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:33.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:33.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:33.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:33.179][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2025-04-19 16:03:33.182][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:33.182][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:33.183][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2025-04-19 16:03:33.515][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2025-04-19 16:03:33.851][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:33.853][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2025-04-19 16:03:33.856][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2025-04-19 16:03:33.858][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2025-04-19 16:03:33.859][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:33.860][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:33.861][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:33.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:33.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:33.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:33.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:33.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:33.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:33.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:33.872][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.879][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:33.879][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:33.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.885][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:33.886][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:33.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:33.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:33.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:33.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.898][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:33.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:33.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:33.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.917][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:33.918][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:33.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.920][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:33.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:33.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.923][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:33.924][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.926][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:33.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:33.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:33.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:33.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.936][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:33.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:33.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:33.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:33.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.943][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:33.943][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:33.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.946][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:33.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:33.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:33.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:33.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.951][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:33.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:33.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:33.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:33.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:33.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:33.987][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-04-19 16:03:33.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:33.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:33.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:33.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:33.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:33.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:33.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:34.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:34.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:34.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:34.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:34.007][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-04-19 16:03:34.008][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:34.009][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2025-04-19 16:03:34.010][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:34.011][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:34.012][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:34.013][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:34.014][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:34.014][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:34.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:34.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:34.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:34.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:34.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:34.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:34.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:34.026][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2025-04-19 16:03:34.028][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:34.029][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:34.030][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2025-04-19 16:03:34.363][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2025-04-19 16:03:34.694][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:34.696][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2025-04-19 16:03:34.699][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2025-04-19 16:03:34.701][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2025-04-19 16:03:34.703][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:34.704][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:34.705][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:34.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:34.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:34.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:34.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:34.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:34.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:34.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:34.716][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:34.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:34.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:34.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:34.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.722][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:34.723][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:34.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.725][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:34.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:34.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.729][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:34.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:34.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:34.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.736][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:34.736][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:34.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:34.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:34.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.742][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:34.743][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:34.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:34.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:34.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:34.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:34.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.752][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:34.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:34.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:34.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:34.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:34.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:34.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:34.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.764][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:34.765][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:34.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:34.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:34.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.771][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:34.772][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:34.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:34.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.778][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:34.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:34.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:34.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:34.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:34.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:34.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:34.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:34.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:34.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:34.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:34.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:34.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:34.816][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-04-19 16:03:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:34.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:34.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:34.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:34.826][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:34.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:34.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:34.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:34.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:34.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:34.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:34.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:34.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.844][private$selectFields]
biodb.TRACE[2025-04-19 16:03:34.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:34.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:34.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.862][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.866][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:34.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.876][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-04-19 16:03:34.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:34.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:34.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:34.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:34.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:34.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:34.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:34.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.893][private$selectFields]
biodb.TRACE[2025-04-19 16:03:34.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:34.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:34.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.902][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.906][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-04-19 16:03:34.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:34.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:34.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:34.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:34.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:34.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:34.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:34.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.933][private$selectFields]
biodb.TRACE[2025-04-19 16:03:34.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:34.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:34.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.944][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:34.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:34.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:34.958][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-04-19 16:03:34.959][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:34.960][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:34.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:34.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:34.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:34.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:34.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:34.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:34.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:34.990][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:34.992][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:34.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-19 16:03:34.995][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:34.996][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-19 16:03:34.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:34.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:34.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.018][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:35.020][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:35.022][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-19 16:03:35.023][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:35.024][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-19 16:03:35.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.062][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:35.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.079][private$selectFields]
biodb.TRACE[2025-04-19 16:03:35.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:35.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:35.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.089][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.093][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:35.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.103][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-19 16:03:35.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.121][private$selectFields]
biodb.TRACE[2025-04-19 16:03:35.121][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:35.122][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:35.123][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.130][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.134][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.162][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:03:35.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.189][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.190][private$selectFields]
biodb.TRACE[2025-04-19 16:03:35.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:35.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:35.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.200][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.204][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:35.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.215][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-19 16:03:35.215][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:35.216][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:35.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:35.228][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:35.230][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:35.231][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-19 16:03:35.232][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:35.233][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-19 16:03:35.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.273][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:35.276][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:35.277][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-19 16:03:35.278][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:35.279][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-19 16:03:35.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.338][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:35.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.356][private$selectFields]
biodb.TRACE[2025-04-19 16:03:35.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:35.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:35.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.366][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.369][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:35.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.380][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:03:35.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.396][private$selectFields]
biodb.TRACE[2025-04-19 16:03:35.397][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:35.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:35.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.407][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.411][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:35.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-19 16:03:35.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.438][private$selectFields]
biodb.TRACE[2025-04-19 16:03:35.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:35.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:35.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.447][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.448][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.458][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:35.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.468][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-19 16:03:35.469][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:35.470][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:35.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:35.481][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:35.483][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:35.484][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-19 16:03:35.485][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:35.486][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-19 16:03:35.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.638][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:35.640][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:35.642][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-19 16:03:35.642][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:35.644][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-19 16:03:35.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:35.702][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:35.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.718][private$selectFields]
biodb.TRACE[2025-04-19 16:03:35.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:35.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:35.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:35.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:03:35.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.765][private$selectFields]
biodb.TRACE[2025-04-19 16:03:35.766][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:35.767][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:35.767][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.775][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.775][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.779][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:35.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.789][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-19 16:03:35.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:35.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.806][private$selectFields]
biodb.TRACE[2025-04-19 16:03:35.807][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:35.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:35.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.815][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:35.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.819][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:35.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:35.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:35.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:35.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-19 16:03:35.831][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:35.831][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:35.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:35.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:35.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:35.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:35.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:35.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:35.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:35.861][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:35.864][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:35.864][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:35.866][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:03:36.200][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:03:36.533][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:36.535][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2025-04-19 16:03:36.538][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2025-04-19 16:03:36.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:36.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:36.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:36.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:36.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:36.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:36.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:36.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:36.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:36.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:36.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:36.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:36.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:36.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:36.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:36.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:36.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:36.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:36.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:36.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:36.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:36.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:36.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:36.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:36.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:36.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:36.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:36.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:36.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:36.585][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-04-19 16:03:36.586][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:36.587][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2025-04-19 16:03:36.588][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:36.589][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:36.590][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:36.591][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:36.592][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:36.592][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:36.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:36.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:36.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:36.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:36.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:36.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:36.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:36.603][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2025-04-19 16:03:36.605][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:36.606][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:36.607][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2025-04-19 16:03:36.937][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2025-04-19 16:03:37.279][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:37.280][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2025-04-19 16:03:37.283][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2025-04-19 16:03:37.285][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2025-04-19 16:03:37.287][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:37.288][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:37.289][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:37.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:37.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:37.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:37.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:37.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:37.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:37.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:37.300][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:37.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:37.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:37.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:37.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.307][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:37.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:37.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:37.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:37.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.313][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:37.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:37.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:37.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:37.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:37.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:37.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:37.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:37.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:37.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:37.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:37.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.336][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:37.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:37.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.339][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:37.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.342][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:37.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.345][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:37.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:37.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:37.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.352][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:37.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:37.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.364][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:37.370][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:37.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:37.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:37.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.376][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:37.377][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:37.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:37.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:37.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:37.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:37.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:37.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:37.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:37.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:37.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:37.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:37.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:37.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:37.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:37.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:37.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:37.413][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-04-19 16:03:37.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:37.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:37.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:37.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:37.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:37.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:37.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:37.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:37.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:37.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:37.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:37.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:37.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:37.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:37.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:37.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:37.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:37.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:37.451][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-04-19 16:03:37.451][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:37.453][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2025-04-19 16:03:37.454][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:37.455][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:37.455][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:37.456][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:37.457][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:37.458][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:37.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:37.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:37.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:37.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:37.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:37.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:37.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:37.469][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2025-04-19 16:03:37.471][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:37.472][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:37.473][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2025-04-19 16:03:37.841][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2025-04-19 16:03:38.200][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:38.202][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2025-04-19 16:03:38.204][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2025-04-19 16:03:38.207][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2025-04-19 16:03:38.208][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:38.209][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:38.210][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:38.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:38.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:38.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:38.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:38.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:38.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:38.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:38.222][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:38.223][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:38.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:38.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.228][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:38.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:38.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.235][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:38.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:38.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:38.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:38.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:38.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:38.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:38.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:38.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.257][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:38.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:38.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.260][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:38.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:38.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:38.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:38.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:38.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:38.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.270][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:38.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:38.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:38.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.277][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:38.277][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:38.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:38.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.283][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:38.284][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:38.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:38.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:38.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:38.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:38.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:38.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:38.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:38.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:38.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:38.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:38.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:38.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:38.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:38.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:38.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:38.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:38.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:38.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:38.319][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-04-19 16:03:38.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:38.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:38.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:38.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:38.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:38.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:38.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:38.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:38.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:38.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:38.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:38.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:38.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:38.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:38.338][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-04-19 16:03:38.339][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:38.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2025-04-19 16:03:38.341][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:38.342][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:38.343][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:38.344][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:38.345][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:38.345][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:38.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:38.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:38.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:38.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:38.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:38.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:38.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:38.357][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2025-04-19 16:03:38.359][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:38.360][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:38.361][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2025-04-19 16:03:38.692][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2025-04-19 16:03:39.027][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:39.029][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2025-04-19 16:03:39.042][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2025-04-19 16:03:39.044][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2025-04-19 16:03:39.046][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:39.047][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:39.048][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:39.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:39.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:39.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:39.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:39.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:39.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:39.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:39.058][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:39.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:39.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:39.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.065][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:39.066][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:39.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.068][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:39.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.071][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:39.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:39.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:39.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:39.078][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:39.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:39.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:39.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.084][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:39.084][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:39.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.087][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:39.088][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:39.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.090][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:39.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:39.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:39.094][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:39.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.100][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:39.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:39.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:39.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:39.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.106][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:39.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:39.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:39.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:39.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:39.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:39.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:39.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:39.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:39.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:39.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:39.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:39.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:39.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:39.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:39.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:39.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:39.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:39.149][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-04-19 16:03:39.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:39.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:39.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:39.159][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:39.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:39.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:39.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:39.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:39.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:39.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:39.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:39.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.176][private$selectFields]
biodb.TRACE[2025-04-19 16:03:39.177][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:39.178][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:39.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.186][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.190][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:39.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.200][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:03:39.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:39.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:39.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:39.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:39.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:39.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:39.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.216][private$selectFields]
biodb.TRACE[2025-04-19 16:03:39.217][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:39.218][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:39.218][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.226][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.230][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.240][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-04-19 16:03:39.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:39.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:39.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:39.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:39.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:39.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:39.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:39.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.256][private$selectFields]
biodb.TRACE[2025-04-19 16:03:39.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:39.258][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:39.259][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.266][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:39.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.270][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:39.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:39.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-04-19 16:03:39.281][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:39.282][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:39.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:39.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:39.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:39.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:39.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:39.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:39.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:39.293][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:39.296][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:39.297][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:39.298][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:03:39.700][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:03:40.191][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:40.193][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2025-04-19 16:03:40.196][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2025-04-19 16:03:40.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:40.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:40.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:40.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:40.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:40.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:40.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:40.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:40.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:40.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:40.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:40.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:40.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:40.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:40.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:40.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:40.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:40.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:40.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:40.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:40.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:40.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:40.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:40.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:40.262][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:40.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:40.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:40.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:40.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:40.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:40.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:40.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:40.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.278][private$selectFields]
biodb.TRACE[2025-04-19 16:03:40.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:40.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:40.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.288][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.292][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:03:40.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:40.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:40.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:40.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:40.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:40.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:40.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:40.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.319][private$selectFields]
biodb.TRACE[2025-04-19 16:03:40.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:40.320][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:40.321][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.329][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.330][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.332][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.343][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-19 16:03:40.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:40.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:40.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:40.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:40.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:40.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:40.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:40.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.360][private$selectFields]
biodb.TRACE[2025-04-19 16:03:40.360][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:40.361][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:40.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:40.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.374][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:40.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:40.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:40.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:40.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-19 16:03:40.385][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:40.385][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:40.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:40.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:40.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:40.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:40.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:40.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:40.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:40.397][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:40.400][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:40.401][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:40.402][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:03:40.735][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:03:41.074][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:41.076][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2025-04-19 16:03:41.079][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2025-04-19 16:03:41.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:41.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:41.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:41.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:41.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:41.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:41.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:41.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:41.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:41.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:41.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:41.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:41.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:41.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:41.109][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-04-19 16:03:41.110][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:41.111][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2025-04-19 16:03:41.112][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:41.113][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:41.114][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:41.115][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:41.116][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:41.117][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:41.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:41.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:41.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:41.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:41.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:41.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:41.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:41.127][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2025-04-19 16:03:41.130][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:41.130][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:41.131][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2025-04-19 16:03:41.463][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2025-04-19 16:03:41.796][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:41.798][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2025-04-19 16:03:41.801][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2025-04-19 16:03:41.803][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2025-04-19 16:03:41.804][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:41.805][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:41.806][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:41.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:41.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:41.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:41.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:41.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:41.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:41.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:41.829][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:41.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:41.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:41.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:41.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.836][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:41.836][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:41.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.842][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:41.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:41.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.848][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:41.849][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:41.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:41.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:41.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:41.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:41.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:41.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:41.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.864][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:41.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.867][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:41.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:41.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:41.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:41.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.876][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:41.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:41.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:41.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:41.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.882][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:41.883][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:41.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:41.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:41.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:41.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:41.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:41.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:41.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:41.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:41.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:41.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:41.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:41.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:41.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:41.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:41.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:41.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:41.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:41.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:41.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:41.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:41.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:41.925][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-04-19 16:03:41.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:41.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:41.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:41.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:41.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:41.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:41.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:41.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:41.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:41.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:41.943][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-04-19 16:03:41.944][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:41.945][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2025-04-19 16:03:41.946][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:41.947][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:41.948][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:41.949][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:41.950][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:41.950][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:41.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:41.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:41.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:41.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:41.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:41.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:41.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:41.961][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2025-04-19 16:03:41.963][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:41.964][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:41.965][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2025-04-19 16:03:42.294][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2025-04-19 16:03:42.626][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:42.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2025-04-19 16:03:42.631][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2025-04-19 16:03:42.633][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2025-04-19 16:03:42.634][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:42.635][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:42.636][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:42.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:42.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:42.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:42.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:42.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:42.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:42.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:42.647][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:42.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:42.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:42.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.653][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:42.654][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:42.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:42.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:42.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:42.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:42.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:42.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:42.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:42.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:42.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:42.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:42.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:42.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.682][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:42.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:42.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.685][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:42.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:42.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.688][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:42.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:42.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:42.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.695][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:42.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:42.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:42.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.701][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:42.702][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:42.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.705][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:42.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:42.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:42.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:42.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:42.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:42.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:42.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:42.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:42.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:42.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:42.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:42.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:42.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:42.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:42.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:42.745][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-04-19 16:03:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:42.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:42.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:42.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:42.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:42.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:42.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:42.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:42.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:42.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:42.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:42.772][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-04-19 16:03:42.772][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:42.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2025-04-19 16:03:42.775][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:42.776][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:42.777][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:42.777][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:42.778][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:42.779][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:42.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:42.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:42.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:42.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:42.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:42.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:42.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:42.791][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2025-04-19 16:03:42.793][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:42.794][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:42.795][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2025-04-19 16:03:43.125][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2025-04-19 16:03:43.463][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:43.465][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2025-04-19 16:03:43.468][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2025-04-19 16:03:43.470][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2025-04-19 16:03:43.471][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:43.472][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:43.473][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:43.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:43.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:43.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:43.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:43.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:43.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:43.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:43.484][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:43.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:43.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:43.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:43.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.490][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:43.491][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:43.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:43.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.496][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:43.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:43.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:43.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:43.503][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:43.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:43.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:43.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:43.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:43.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:43.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:43.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.515][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:43.515][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:43.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.518][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:43.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:43.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:43.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:43.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:43.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:43.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.530][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:43.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:43.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:43.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.536][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:43.537][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:43.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.539][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:43.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:43.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.542][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:43.543][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:43.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:43.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:43.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:43.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:43.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:43.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:43.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:43.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:43.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:43.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:43.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:43.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:43.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:43.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:43.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:43.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:43.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:43.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:43.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:43.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:43.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:43.579][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-04-19 16:03:43.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:43.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:43.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:43.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:43.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:43.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:43.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:43.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:43.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:43.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:43.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:43.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:43.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:43.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:43.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:43.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:43.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:43.617][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-04-19 16:03:43.618][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:43.619][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2025-04-19 16:03:43.620][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:43.621][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:43.622][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:43.623][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:43.623][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:43.624][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:43.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:43.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:43.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:43.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:43.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:43.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:43.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:43.635][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2025-04-19 16:03:43.637][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:43.638][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:43.639][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2025-04-19 16:03:43.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2025-04-19 16:03:44.326][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:44.328][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2025-04-19 16:03:44.330][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2025-04-19 16:03:44.333][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2025-04-19 16:03:44.334][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:44.335][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:44.336][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:44.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:44.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:44.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:44.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:44.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:44.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:44.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:44.347][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:44.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:44.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.353][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:44.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:44.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:44.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.359][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:44.360][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:44.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:44.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:44.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.366][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:44.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:44.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.372][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:44.373][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:44.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:44.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:44.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.396][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:44.397][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:44.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.399][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:44.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:44.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.402][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:44.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:44.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.406][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:44.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:44.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:44.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:44.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:44.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:44.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.415][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:44.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:44.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:44.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:44.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.421][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:44.422][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:44.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.428][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:44.429][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:44.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:44.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:44.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:44.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:44.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:44.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:44.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:44.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:44.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:44.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:44.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:44.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:44.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:44.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:44.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:44.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:44.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:44.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:44.465][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-04-19 16:03:44.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:44.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:44.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:44.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:44.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:44.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:44.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:44.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:44.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:44.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:44.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:44.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:44.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:44.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:44.484][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-04-19 16:03:44.485][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:44.487][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2025-04-19 16:03:44.487][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:44.488][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:44.489][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:44.490][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:44.491][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:44.492][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:44.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:44.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:44.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:44.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:44.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:44.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:44.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:44.503][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2025-04-19 16:03:44.505][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:44.506][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:44.507][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2025-04-19 16:03:44.839][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2025-04-19 16:03:45.177][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:45.179][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2025-04-19 16:03:45.182][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2025-04-19 16:03:45.184][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2025-04-19 16:03:45.186][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:45.186][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:45.187][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:45.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:45.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:45.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:45.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:45.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:45.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:45.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:45.199][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:45.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:45.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:45.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:45.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.205][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:45.206][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:45.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.209][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:45.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:45.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.212][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:45.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:45.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:45.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:45.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:45.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:45.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:45.225][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:45.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:45.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.230][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:45.231][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:45.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.234][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:45.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:45.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.237][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:45.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:45.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.240][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:45.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:45.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:45.243][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:45.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:45.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:45.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.249][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:45.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:45.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:45.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.255][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:45.256][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:45.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:45.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:45.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.261][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:45.262][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:45.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:45.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:45.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:45.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:45.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:45.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:45.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:45.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:45.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:45.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:45.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:45.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:45.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:45.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:45.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:45.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:45.299][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-04-19 16:03:45.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:45.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:45.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:45.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:45.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:45.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:45.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:45.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:45.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:45.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:45.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:45.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:45.318][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-04-19 16:03:45.319][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:45.320][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2025-04-19 16:03:45.321][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:45.321][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:45.322][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:45.323][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:45.324][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:45.324][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:45.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:45.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:45.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:45.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:45.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:45.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:45.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:45.344][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2025-04-19 16:03:45.346][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:45.347][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:45.348][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2025-04-19 16:03:45.679][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2025-04-19 16:03:46.012][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:46.014][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2025-04-19 16:03:46.017][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2025-04-19 16:03:46.019][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2025-04-19 16:03:46.021][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:46.022][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:46.023][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:46.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:46.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:46.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:46.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:46.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:46.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:46.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:46.035][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.042][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:46.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:46.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:46.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:46.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:46.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:46.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:46.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:46.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:46.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:46.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:46.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:46.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:46.068][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:46.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.071][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:46.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:46.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.074][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:46.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:46.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.077][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:46.078][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:46.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:46.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.084][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:46.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:46.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.090][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:46.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:46.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.094][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:46.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.097][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:46.098][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:46.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:46.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:46.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:46.135][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-04-19 16:03:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:46.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:46.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:46.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:46.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:46.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:46.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:46.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:46.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:46.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:46.155][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-04-19 16:03:46.156][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:46.157][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2025-04-19 16:03:46.158][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:46.159][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:46.160][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:46.161][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:46.161][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:46.162][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:46.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:46.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:46.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:46.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:46.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:46.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:46.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:46.174][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2025-04-19 16:03:46.176][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:46.177][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:46.178][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2025-04-19 16:03:46.509][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2025-04-19 16:03:46.864][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:46.866][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2025-04-19 16:03:46.869][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2025-04-19 16:03:46.872][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2025-04-19 16:03:46.873][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:46.874][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:46.875][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:46.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:46.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:46.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:46.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:46.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:46.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:46.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:46.887][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.887][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.893][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:46.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:46.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.900][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:46.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:46.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.906][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:46.907][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:46.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:46.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:46.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.913][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:46.914][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:46.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:46.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.919][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:46.920][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:46.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.923][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:46.924][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:46.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.926][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:46.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:46.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:46.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:46.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:46.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:46.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.936][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:46.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:46.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:46.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:46.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.943][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:46.944][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:46.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.946][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:46.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:46.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:46.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:46.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:46.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:46.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:46.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:46.999][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-04-19 16:03:47.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:47.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:47.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:47.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:47.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:47.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:47.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:47.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:47.018][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-04-19 16:03:47.019][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:47.020][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2025-04-19 16:03:47.021][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:47.022][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:47.023][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:47.024][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:47.025][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:47.025][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:47.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:47.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:47.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:47.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:47.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:47.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:47.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:47.036][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2025-04-19 16:03:47.038][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:47.039][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:47.040][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2025-04-19 16:03:47.371][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2025-04-19 16:03:47.705][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:47.707][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2025-04-19 16:03:47.710][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2025-04-19 16:03:47.712][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2025-04-19 16:03:47.714][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:47.715][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:47.716][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:47.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:47.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:47.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:47.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:47.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:47.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:47.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:47.727][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:47.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:47.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.734][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:47.735][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:47.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.737][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:47.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.740][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:47.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:47.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:47.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:47.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:47.748][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:47.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:47.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:47.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:47.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:47.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:47.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:47.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:47.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:47.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.764][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:47.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.767][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:47.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:47.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:47.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:47.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:47.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.777][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:47.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:47.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:47.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:47.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.783][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:47.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:47.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:47.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:47.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.790][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:47.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:47.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:47.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:47.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:47.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:47.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:47.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:47.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:47.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:47.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:47.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:47.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:47.828][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-04-19 16:03:47.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:47.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:47.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:47.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:47.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:47.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:47.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:47.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:47.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:47.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:47.847][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-04-19 16:03:47.848][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:47.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2025-04-19 16:03:47.851][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:47.852][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:47.852][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:47.853][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:47.854][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:47.855][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:47.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:47.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:47.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:47.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:47.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:47.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:47.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:47.866][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2025-04-19 16:03:47.869][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:47.869][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:47.870][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2025-04-19 16:03:48.203][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2025-04-19 16:03:48.549][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:48.551][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2025-04-19 16:03:48.554][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2025-04-19 16:03:48.556][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2025-04-19 16:03:48.557][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:48.558][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:48.559][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:48.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:48.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:48.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:48.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:48.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:48.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:48.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:48.570][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:48.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:48.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:48.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:48.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.576][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:48.577][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:48.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.583][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:48.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:48.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:48.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:48.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:48.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:48.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:48.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:48.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:48.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:48.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:48.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:48.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.619][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:48.620][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:48.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.623][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:48.624][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:48.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.626][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:48.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:48.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:48.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:48.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:48.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:48.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.644][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:48.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:48.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:48.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.651][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:48.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:48.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:48.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.657][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:48.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:48.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:48.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:48.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:48.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:48.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:48.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:48.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:48.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:48.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:48.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:48.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:48.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:48.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:48.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:48.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:48.694][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-04-19 16:03:48.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:48.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:48.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:48.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:48.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:48.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:48.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:48.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:48.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:48.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:48.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:48.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:48.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:48.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:48.714][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-04-19 16:03:48.715][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:48.716][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2025-04-19 16:03:48.717][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:48.718][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:48.719][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:48.720][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:48.721][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:48.722][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:48.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:48.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:48.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:48.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:48.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:48.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:48.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:48.733][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2025-04-19 16:03:48.735][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:48.736][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:48.737][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2025-04-19 16:03:49.069][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2025-04-19 16:03:49.406][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:49.408][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2025-04-19 16:03:49.411][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2025-04-19 16:03:49.413][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2025-04-19 16:03:49.415][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:49.415][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:49.416][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:49.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:49.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:49.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:49.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:49.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:49.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:49.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:49.429][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:49.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:49.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:49.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:49.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.435][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:49.436][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:49.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.441][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:49.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:49.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:49.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:49.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:49.449][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:49.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:49.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.455][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:49.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:49.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:49.462][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:49.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.464][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:49.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:49.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.468][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:49.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:49.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:49.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:49.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:49.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.478][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:49.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:49.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.484][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:49.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:49.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:49.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:49.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:49.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:49.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:49.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:49.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:49.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:49.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:49.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:49.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:49.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:49.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:49.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:49.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:49.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:49.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:49.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:49.530][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-04-19 16:03:49.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:49.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:49.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:49.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:49.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:49.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:49.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:49.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:49.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:49.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:49.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:49.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:49.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:49.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:49.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:49.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:49.550][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-04-19 16:03:49.551][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:49.552][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2025-04-19 16:03:49.553][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:49.553][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:49.554][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:49.555][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:49.556][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:49.557][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:49.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:49.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:49.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:49.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:49.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:49.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:49.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:49.568][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2025-04-19 16:03:49.578][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:49.579][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:49.581][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2025-04-19 16:03:49.915][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2025-04-19 16:03:50.246][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:50.248][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2025-04-19 16:03:50.251][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2025-04-19 16:03:50.253][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2025-04-19 16:03:50.254][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:50.255][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:50.256][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:50.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:50.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:50.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:50.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:50.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:50.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:50.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:50.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:50.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:50.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:50.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.274][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:50.274][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:50.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.281][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:50.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:50.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:50.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:50.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:50.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:50.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:50.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:50.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:50.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:50.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:50.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.300][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:50.301][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:50.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.303][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:50.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.306][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:50.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.309][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:50.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:50.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:50.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:50.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.315][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:50.316][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:50.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:50.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:50.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.321][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:50.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:50.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.325][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:50.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.328][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:50.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:50.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:50.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:50.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:50.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:50.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:50.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:50.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:50.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:50.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:50.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:50.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:50.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:50.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:50.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:50.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:50.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:50.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:50.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:50.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:50.367][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-04-19 16:03:50.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:50.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:50.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:50.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:50.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:50.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:50.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:50.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:50.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:50.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:50.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:50.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:50.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:50.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:50.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:50.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:50.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:50.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:50.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:50.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:50.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:50.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:50.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:50.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:50.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:50.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:50.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:50.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:50.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:50.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:50.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:50.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:50.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:50.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:50.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:50.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:50.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:50.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:50.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:50.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:50.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:50.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:50.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:50.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:50.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:50.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:50.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:50.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:50.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:50.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:50.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:50.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:50.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:50.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:50.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:50.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:50.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:50.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:50.496][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-04-19 16:03:50.497][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:50.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2025-04-19 16:03:50.499][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:50.500][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:50.501][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:50.502][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:50.503][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:50.503][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:50.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:50.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:50.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:50.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:50.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:50.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:50.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:50.514][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2025-04-19 16:03:50.516][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:50.517][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:50.526][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2025-04-19 16:03:50.859][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2025-04-19 16:03:51.208][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:51.210][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2025-04-19 16:03:51.213][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2025-04-19 16:03:51.215][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2025-04-19 16:03:51.217][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:51.218][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:51.219][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:51.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:51.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:51.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:51.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:51.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:51.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:51.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:51.230][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:51.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:51.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:51.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:51.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.236][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:51.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:51.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:51.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.242][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:51.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:51.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:51.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:51.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:51.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:51.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:51.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:51.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:51.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:51.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:51.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.262][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:51.262][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:51.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.265][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:51.266][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:51.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:51.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:51.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.278][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:51.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:51.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:51.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:51.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.284][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:51.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:51.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:51.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:51.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:51.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:51.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:51.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:51.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:51.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:51.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:51.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:51.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:51.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:51.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:51.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:51.328][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-04-19 16:03:51.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:51.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:51.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:51.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:51.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:51.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:51.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:51.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:51.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:51.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:51.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:51.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:51.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:51.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:51.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:51.366][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-04-19 16:03:51.366][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:51.368][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2025-04-19 16:03:51.369][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:51.370][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:51.370][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:51.371][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:51.372][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:51.373][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:51.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:51.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:51.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:51.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:51.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:51.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:51.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:51.384][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2025-04-19 16:03:51.386][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:51.387][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:51.388][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2025-04-19 16:03:51.719][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2025-04-19 16:03:52.059][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:52.061][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2025-04-19 16:03:52.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2025-04-19 16:03:52.066][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2025-04-19 16:03:52.068][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:52.068][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:52.069][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:52.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:52.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:52.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:52.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:52.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:52.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:52.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:52.080][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.088][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:52.088][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:52.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:52.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.094][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:52.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:52.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:52.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:52.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:52.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:52.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:52.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:52.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.107][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:52.108][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:52.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.113][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:52.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:52.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.117][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:52.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:52.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:52.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:52.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:52.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:52.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.130][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:52.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:52.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:52.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.136][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:52.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:52.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:52.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.143][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:52.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:52.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:52.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:52.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:52.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:52.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:52.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:52.191][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-04-19 16:03:52.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:52.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:52.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:52.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:52.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:52.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:52.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:52.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:52.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:52.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:52.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:52.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:52.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:52.209][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-04-19 16:03:52.210][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:52.211][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2025-04-19 16:03:52.212][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:52.213][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:52.214][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:52.215][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:52.215][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:52.216][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:52.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:52.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:52.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:52.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:52.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:52.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:52.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:52.226][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2025-04-19 16:03:52.228][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:52.229][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:52.230][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2025-04-19 16:03:52.560][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2025-04-19 16:03:52.911][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:52.913][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2025-04-19 16:03:52.915][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2025-04-19 16:03:52.918][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2025-04-19 16:03:52.919][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:52.920][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:52.921][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:52.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:52.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:52.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:52.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:52.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:52.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:52.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:52.932][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:52.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.938][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:52.939][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:52.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.945][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:52.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:52.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:52.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:52.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:52.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:52.958][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:52.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:52.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:52.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.963][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:52.964][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:52.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.965][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.966][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:52.967][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:52.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.970][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:52.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.973][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:52.973][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:52.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:52.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:52.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.979][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:52.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:52.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:52.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:52.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.985][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:52.986][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:52.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:52.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.992][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:52.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:52.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:52.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:52.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:52.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:52.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:52.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:53.030][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-04-19 16:03:53.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:53.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:53.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:53.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:53.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:53.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:53.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:53.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:53.048][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-04-19 16:03:53.049][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:53.050][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2025-04-19 16:03:53.051][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:53.052][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:53.053][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:53.054][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:53.055][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:53.056][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:53.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:53.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:53.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:53.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:53.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:53.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:53.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:53.066][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2025-04-19 16:03:53.068][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:53.069][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:53.070][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2025-04-19 16:03:53.399][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2025-04-19 16:03:53.733][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:53.735][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2025-04-19 16:03:53.738][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2025-04-19 16:03:53.740][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2025-04-19 16:03:53.741][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:53.742][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:53.743][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:53.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:53.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:53.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:53.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:53.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:53.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:53.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:53.754][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.761][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:53.761][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:53.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:53.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:53.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.767][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:53.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:53.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:53.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.784][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:53.785][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:53.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:53.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:53.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:53.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:53.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:53.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.796][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:53.797][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:53.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.799][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:53.800][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:53.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:53.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:53.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:53.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:53.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:53.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.817][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:53.818][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:53.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:53.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:53.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:53.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:53.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:53.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:53.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:53.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:53.859][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-04-19 16:03:53.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:53.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:53.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:53.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:53.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:53.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:53.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:53.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:53.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:53.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:53.878][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-04-19 16:03:53.879][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:53.880][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2025-04-19 16:03:53.881][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:53.882][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:53.882][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:53.883][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:53.884][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:53.885][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:53.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:53.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:53.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:53.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:53.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:53.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:53.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:53.896][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2025-04-19 16:03:53.898][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:53.898][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:53.899][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2025-04-19 16:03:54.237][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2025-04-19 16:03:54.571][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:54.573][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2025-04-19 16:03:54.576][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2025-04-19 16:03:54.578][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2025-04-19 16:03:54.580][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:54.581][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:54.582][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:54.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:54.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:54.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:54.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:54.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:54.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:54.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:54.595][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:54.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:54.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.602][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:54.603][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:54.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:54.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:54.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.610][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:54.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:54.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:54.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:54.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:54.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:54.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:54.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:54.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:54.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:54.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:54.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:54.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:54.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.635][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:54.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:54.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.639][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:54.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:54.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:54.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:54.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:54.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.650][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:54.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:54.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:54.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:54.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.658][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:54.659][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:54.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:54.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:54.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.665][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:54.666][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:54.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:54.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:54.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:54.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:54.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:54.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:54.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:54.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:54.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:54.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:54.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:54.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:54.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:54.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:54.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:54.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:54.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:54.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:54.708][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-04-19 16:03:54.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:54.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:54.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:54.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:54.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:54.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:54.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:54.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:54.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:54.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:54.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:54.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:54.730][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-04-19 16:03:54.731][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:54.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2025-04-19 16:03:54.742][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:54.743][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:54.744][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:54.746][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:54.746][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:54.747][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:54.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:54.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:54.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:54.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:54.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:54.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:54.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:54.760][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2025-04-19 16:03:54.762][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:54.763][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:54.764][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2025-04-19 16:03:55.100][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2025-04-19 16:03:55.431][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:55.433][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2025-04-19 16:03:55.436][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2025-04-19 16:03:55.438][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2025-04-19 16:03:55.440][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:55.441][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:55.442][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:55.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:55.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:55.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:55.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:55.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:55.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:55.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:55.454][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:55.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:55.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:55.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:55.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.461][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:55.462][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:55.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:55.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:55.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:55.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:55.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:55.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.478][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:55.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:55.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:55.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:55.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:55.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:55.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:55.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.498][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:55.500][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:55.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.503][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:55.504][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:55.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.507][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:55.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:55.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:55.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:55.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:55.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.520][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:55.521][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:55.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:55.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.528][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:55.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:55.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.531][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:55.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.535][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:55.537][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:55.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:55.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:55.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:55.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:55.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:55.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:55.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:55.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:55.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:55.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:55.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:55.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:55.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:55.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:55.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:55.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:55.578][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-04-19 16:03:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:55.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:55.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:55.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:55.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:55.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:55.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:55.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:55.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:55.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:55.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:55.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:55.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:55.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:55.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:55.599][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-04-19 16:03:55.600][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:55.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2025-04-19 16:03:55.602][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:55.603][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:55.604][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:55.605][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:03:55.606][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:55.607][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:03:55.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:55.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:55.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:55.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:55.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:55.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:55.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:55.619][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2025-04-19 16:03:55.622][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:55.622][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:55.624][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2025-04-19 16:03:55.959][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2025-04-19 16:03:56.291][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:56.293][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2025-04-19 16:03:56.296][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2025-04-19 16:03:56.298][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2025-04-19 16:03:56.300][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:56.301][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:56.302][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:03:56.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.314][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:56.315][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:56.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:56.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:56.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.321][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:56.322][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:56.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:03:56.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:03:56.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.328][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:56.329][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:56.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:56.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:56.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:56.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:56.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:56.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:56.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:56.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:56.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:56.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:56.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.349][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:56.350][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:03:56.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.353][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:56.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.356][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:03:56.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.360][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:56.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:56.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:56.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:56.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.366][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:56.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:56.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:56.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.373][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:56.374][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:56.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.377][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:03:56.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:03:56.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.381][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:56.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:56.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:03:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:03:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:56.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:56.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:56.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:56.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:56.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:56.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:56.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:56.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:56.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:56.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.433][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-04-19 16:03:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.464][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:56.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.483][private$selectFields]
biodb.TRACE[2025-04-19 16:03:56.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:56.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:56.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.493][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.497][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:56.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.509][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:03:56.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.528][private$selectFields]
biodb.TRACE[2025-04-19 16:03:56.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:56.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:56.530][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.538][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.543][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:56.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-19 16:03:56.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.572][private$selectFields]
biodb.TRACE[2025-04-19 16:03:56.573][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:56.574][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:56.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.583][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.587][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:56.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-19 16:03:56.600][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:56.601][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:56.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:56.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:56.634][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:56.636][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2025-04-19 16:03:56.636][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:56.638][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2025-04-19 16:03:56.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:56.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.747][private$selectFields]
biodb.TRACE[2025-04-19 16:03:56.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:56.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:56.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.751][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.757][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.761][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:56.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-19 16:03:56.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.790][private$selectFields]
biodb.TRACE[2025-04-19 16:03:56.791][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:56.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:56.792][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.801][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.805][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:56.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.816][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-04-19 16:03:56.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.835][private$selectFields]
biodb.TRACE[2025-04-19 16:03:56.836][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:56.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:56.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.845][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:56.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.849][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:56.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:56.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-04-19 16:03:56.862][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:56.863][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:56.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:56.875][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:56.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:56.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2025-04-19 16:03:56.880][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:56.881][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2025-04-19 16:03:56.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:56.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:56.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:56.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:56.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:56.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:56.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:56.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:56.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:56.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:56.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:56.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.030][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:57.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.047][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.048][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.049][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.050][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.059][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.059][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.063][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-04-19 16:03:57.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.093][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.104][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.107][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.119][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-04-19 16:03:57.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.137][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.138][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.139][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.158][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.165][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.181][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-04-19 16:03:57.182][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:57.183][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:57.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:57.196][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:57.199][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:57.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2025-04-19 16:03:57.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:57.202][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2025-04-19 16:03:57.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.246][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:57.249][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:57.250][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2025-04-19 16:03:57.251][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:57.252][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2025-04-19 16:03:57.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.314][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:57.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.340][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.351][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.355][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-04-19 16:03:57.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.385][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.395][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.400][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.411][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-04-19 16:03:57.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.430][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.441][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.446][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-04-19 16:03:57.458][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:57.459][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:57.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:57.491][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:57.494][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:57.495][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-19 16:03:57.496][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:57.497][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-19 16:03:57.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.521][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:57.524][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:57.525][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-19 16:03:57.526][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:57.527][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-19 16:03:57.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.573][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:57.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.593][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.605][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.621][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-19 16:03:57.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.639][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.639][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.640][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.657][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.662][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.674][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:03:57.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.693][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.700][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.703][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.708][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.719][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-19 16:03:57.720][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:57.720][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:57.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:57.734][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:57.737][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:57.738][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-19 16:03:57.739][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:57.741][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-19 16:03:57.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.787][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:57.790][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:57.791][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-19 16:03:57.792][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:57.794][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-19 16:03:57.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:57.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:57.861][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:57.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.881][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.883][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.893][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.897][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:03:57.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.928][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.929][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.938][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.938][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.939][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.943][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-19 16:03:57.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:57.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:57.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:57.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:57.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:57.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:57.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:57.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.979][private$selectFields]
biodb.TRACE[2025-04-19 16:03:57.980][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:57.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:57.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.990][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:57.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.995][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:57.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:57.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:57.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:57.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-19 16:03:58.006][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:58.007][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:58.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:58.020][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:58.022][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:58.023][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-19 16:03:58.025][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:58.026][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-19 16:03:58.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:58.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:58.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-19 16:03:58.202][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:58.203][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-19 16:03:58.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.267][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:58.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.292][private$selectFields]
biodb.TRACE[2025-04-19 16:03:58.293][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:58.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:58.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.303][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.308][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:58.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.319][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:03:58.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.337][private$selectFields]
biodb.TRACE[2025-04-19 16:03:58.338][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:58.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:58.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.347][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:58.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-19 16:03:58.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.381][private$selectFields]
biodb.TRACE[2025-04-19 16:03:58.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:58.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:58.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.392][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.396][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:58.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.407][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-19 16:03:58.408][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:58.409][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:58.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:58.443][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:58.447][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:58.449][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2025-04-19 16:03:58.450][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:58.452][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2025-04-19 16:03:58.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.596][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:58.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.615][private$selectFields]
biodb.TRACE[2025-04-19 16:03:58.616][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:58.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:58.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.632][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.636][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:58.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:03:58.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.665][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.666][private$selectFields]
biodb.TRACE[2025-04-19 16:03:58.666][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:58.667][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:58.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.676][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.680][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:58.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-04-19 16:03:58.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.709][private$selectFields]
biodb.TRACE[2025-04-19 16:03:58.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:58.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:58.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.719][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.724][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:58.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-04-19 16:03:58.736][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:58.737][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:58.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:58.749][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:58.752][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:58.753][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2025-04-19 16:03:58.754][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:58.755][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2025-04-19 16:03:58.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:58.818][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:58.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.836][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.837][private$selectFields]
biodb.TRACE[2025-04-19 16:03:58.837][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:58.838][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:58.839][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.857][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.861][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:58.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:03:58.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.894][private$selectFields]
biodb.TRACE[2025-04-19 16:03:58.895][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:58.896][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:58.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.905][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.908][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:58.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-19 16:03:58.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.944][private$selectFields]
biodb.TRACE[2025-04-19 16:03:58.944][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:58.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:58.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.953][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:58.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.957][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:58.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:58.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.967][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-19 16:03:58.967][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:58.968][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:58.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:58.979][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:58.981][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:58.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2025-04-19 16:03:58.983][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:58.984][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2025-04-19 16:03:58.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:58.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:58.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:58.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:58.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:58.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:58.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:58.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:58.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:59.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.585][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:59.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.600][private$selectFields]
biodb.TRACE[2025-04-19 16:03:59.601][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:59.602][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:59.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.604][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.609][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.613][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:59.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.622][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:03:59.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.637][private$selectFields]
biodb.TRACE[2025-04-19 16:03:59.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:59.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:59.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.646][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.647][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.650][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:59.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-19 16:03:59.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:59.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.676][private$selectFields]
biodb.TRACE[2025-04-19 16:03:59.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:59.677][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:59.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.685][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:03:59.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.689][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:03:59.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:03:59.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-19 16:03:59.699][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:59.700][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:59.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:59.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:59.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:59.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:59.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:59.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:59.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:59.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:59.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:59.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:59.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:59.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:03:59.767][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:59.767][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:59.769][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:04:00.106][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:04:00.679][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:00.681][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2025-04-19 16:04:00.684][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2025-04-19 16:04:00.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:00.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:00.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:00.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:00.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:00.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:00.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:00.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:00.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:00.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:00.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:00.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:00.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:00.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:00.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:00.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:00.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:00.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:00.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:00.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:00.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:00.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:00.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:00.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:00.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:00.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:00.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:00.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:00.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:00.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:00.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:00.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:00.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:00.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:00.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:00.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:00.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:00.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:00.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:00.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:00.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:00.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:00.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:00.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:00.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:00.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:00.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:00.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:00.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:00.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:00.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:00.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:00.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:00.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:00.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:00.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:00.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:00.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:00.808][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-04-19 16:04:00.808][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:00.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2025-04-19 16:04:00.811][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:00.812][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:00.813][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:00.814][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:00.814][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:00.815][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:00.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:00.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:00.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:00.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:00.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:00.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:00.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:00.827][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2025-04-19 16:04:00.829][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:00.830][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:00.831][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2025-04-19 16:04:01.175][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2025-04-19 16:04:01.518][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:01.520][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2025-04-19 16:04:01.523][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2025-04-19 16:04:01.525][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2025-04-19 16:04:01.527][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:01.528][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:01.529][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:01.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:01.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:01.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:01.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:01.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:01.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:01.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:01.542][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:01.543][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:01.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:01.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:01.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.549][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:01.550][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:01.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:01.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.557][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:01.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:01.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:01.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:01.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:01.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:01.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:01.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:01.571][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:01.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:01.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:01.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.577][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:01.578][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:01.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.581][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:01.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:01.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.584][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:01.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:01.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.588][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:01.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:01.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.591][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:01.592][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:01.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:01.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:01.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.598][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:01.599][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:01.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:01.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:01.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.605][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:01.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:01.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:01.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:01.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.612][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:01.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:01.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:01.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:01.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:01.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:01.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:01.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:01.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:01.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:01.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:01.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:01.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:01.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:01.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:01.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:01.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:01.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:01.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:01.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:01.653][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-04-19 16:04:01.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:01.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:01.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:01.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:01.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:01.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:01.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:01.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:01.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:01.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:01.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:01.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:01.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:01.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:01.674][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-04-19 16:04:01.675][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:01.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2025-04-19 16:04:01.677][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:01.678][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:01.679][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:01.680][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:01.681][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:01.682][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:01.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:01.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:01.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:01.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:01.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:01.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:01.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:01.694][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2025-04-19 16:04:01.696][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:01.697][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:01.698][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2025-04-19 16:04:02.030][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2025-04-19 16:04:02.374][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:02.376][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2025-04-19 16:04:02.379][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2025-04-19 16:04:02.381][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2025-04-19 16:04:02.382][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:02.384][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:02.385][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:02.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:02.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:02.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:02.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:02.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:02.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:02.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:02.397][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:02.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:02.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:02.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:02.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.404][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:02.405][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:02.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.408][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:02.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:02.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.441][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:02.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:02.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:02.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:02.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.449][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:02.450][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:02.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.456][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:02.456][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:02.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:02.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:02.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.462][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:02.463][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:02.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.469][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:02.470][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:02.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:02.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:02.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.476][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:02.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:02.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:02.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.483][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:02.483][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:02.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:02.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.489][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:02.490][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:02.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:02.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:02.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.497][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:02.497][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:02.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:02.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:02.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:02.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:02.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:02.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:02.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:02.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:02.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:02.538][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-04-19 16:04:02.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:02.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:02.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:02.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:02.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:02.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:02.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:02.549][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:02.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:02.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:02.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:02.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:02.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:02.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:02.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.568][private$selectFields]
biodb.TRACE[2025-04-19 16:04:02.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:02.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:02.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.578][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.583][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-19 16:04:02.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:02.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:02.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:02.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:02.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:02.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:02.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:02.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.614][private$selectFields]
biodb.TRACE[2025-04-19 16:04:02.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:02.615][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:02.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.624][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.628][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:02.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:04:02.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:02.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:02.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:02.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:02.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:02.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:02.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:02.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.657][private$selectFields]
biodb.TRACE[2025-04-19 16:04:02.657][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:02.658][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:02.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.668][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:02.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.672][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:02.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:02.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:02.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:02.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-04-19 16:04:02.684][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:02.685][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:02.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:02.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:02.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:02.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:02.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:02.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:02.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:02.698][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:02.700][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:02.701][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:02.703][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:04:03.042][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:04:03.705][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:03.707][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2025-04-19 16:04:03.710][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2025-04-19 16:04:03.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:03.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:03.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:03.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:03.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:03.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:03.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:03.725][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-04-19 16:04:03.726][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:03.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2025-04-19 16:04:03.737][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:03.738][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:03.739][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:03.740][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:03.741][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:03.741][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:03.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:03.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:03.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:03.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:03.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:03.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:03.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:03.753][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2025-04-19 16:04:03.754][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:03.755][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:03.756][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2025-04-19 16:04:04.089][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2025-04-19 16:04:04.431][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:04.433][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2025-04-19 16:04:04.436][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2025-04-19 16:04:04.438][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2025-04-19 16:04:04.439][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:04.440][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:04.440][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:04.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:04.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:04.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:04.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:04.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:04.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:04.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:04.451][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:04.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:04.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:04.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:04.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.457][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:04.458][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:04.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.460][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:04.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:04.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.463][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:04.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:04.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:04.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:04.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:04.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:04.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:04.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:04.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:04.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:04.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:04.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:04.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.481][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:04.482][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:04.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.484][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:04.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:04.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.487][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:04.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:04.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.490][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:04.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:04.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.500][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:04.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:04.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:04.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.506][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:04.506][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:04.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.509][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:04.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:04.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:04.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:04.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:04.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:04.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:04.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:04.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:04.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:04.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:04.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:04.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:04.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:04.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:04.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:04.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:04.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:04.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:04.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:04.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:04.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:04.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:04.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:04.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:04.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:04.547][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-04-19 16:04:04.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:04.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:04.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:04.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:04.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:04.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:04.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:04.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:04.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:04.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:04.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:04.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:04.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:04.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:04.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:04.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:04.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:04.582][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-04-19 16:04:04.583][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:04.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2025-04-19 16:04:04.585][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:04.586][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:04.587][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:04.587][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:04.588][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:04.589][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:04.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:04.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:04.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:04.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:04.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:04.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:04.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:04.599][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2025-04-19 16:04:04.601][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:04.602][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:04.603][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2025-04-19 16:04:04.935][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2025-04-19 16:04:05.270][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:05.272][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2025-04-19 16:04:05.276][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2025-04-19 16:04:05.278][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2025-04-19 16:04:05.279][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:05.280][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:05.281][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:05.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:05.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:05.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:05.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:05.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:05.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:05.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:05.293][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:05.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:05.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.300][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:05.301][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:05.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:05.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:05.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.307][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:05.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:05.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:05.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:05.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:05.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:05.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:05.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:05.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:05.322][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:05.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:05.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:05.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.328][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:05.329][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:05.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.331][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:05.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:05.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.335][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:05.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:05.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.338][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:05.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:05.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.361][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:05.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:05.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:05.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:05.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.369][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:05.369][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:05.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:05.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:05.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.376][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:05.377][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:05.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:05.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:05.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:05.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:05.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:05.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:05.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:05.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:05.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:05.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:05.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:05.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:05.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:05.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:05.415][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-04-19 16:04:05.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:05.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:05.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:05.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:05.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:05.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:05.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:05.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:05.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:05.445][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:05.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:05.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:05.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:05.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:05.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:05.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:05.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:05.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.463][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.464][private$selectFields]
biodb.TRACE[2025-04-19 16:04:05.465][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:05.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:05.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.474][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.478][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:05.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-04-19 16:04:05.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:05.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:05.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:05.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:05.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:05.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:05.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:05.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.507][private$selectFields]
biodb.TRACE[2025-04-19 16:04:05.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:05.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:05.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.517][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.521][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:05.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:04:05.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:05.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:05.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:05.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:05.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:05.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:05.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.563][private$selectFields]
biodb.TRACE[2025-04-19 16:04:05.563][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:05.564][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:05.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.573][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:05.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.577][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:05.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:05.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:05.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:05.588][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-19 16:04:05.589][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:05.590][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:05.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:05.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:05.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:05.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:05.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:05.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:05.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:05.602][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:05.605][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:05.606][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:05.607][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:04:05.939][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:04:06.547][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:06.549][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2025-04-19 16:04:06.552][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2025-04-19 16:04:06.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:06.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:06.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:06.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:06.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:06.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:06.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:06.565][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-04-19 16:04:06.566][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:06.568][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2025-04-19 16:04:06.569][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:06.570][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:06.571][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:06.572][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:06.573][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:06.573][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:06.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:06.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:06.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:06.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:06.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:06.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:06.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:06.585][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2025-04-19 16:04:06.588][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:06.588][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:06.590][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2025-04-19 16:04:06.921][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2025-04-19 16:04:07.275][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:07.279][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2025-04-19 16:04:07.285][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2025-04-19 16:04:07.290][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2025-04-19 16:04:07.292][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:07.295][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:07.296][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:07.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:07.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:07.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:07.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:07.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:07.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:07.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:07.314][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:07.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:07.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:07.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:07.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.324][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:07.326][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:07.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:07.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:07.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.333][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:07.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:07.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:07.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:07.342][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:07.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:07.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:07.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.349][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:07.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:07.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:07.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:07.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:07.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:07.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.360][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:07.361][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:07.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.364][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:07.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:07.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.367][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:07.368][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:07.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:07.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.374][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:07.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:07.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:07.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:07.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.382][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:07.382][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:07.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:07.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:07.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.389][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:07.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:07.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:07.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:07.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:07.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:07.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:07.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:07.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:07.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:07.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:07.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:07.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:07.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:07.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:07.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:07.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:07.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:07.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:07.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:07.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:07.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:07.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:07.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:07.430][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-04-19 16:04:07.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:07.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:07.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:07.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:07.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:07.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:07.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:07.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:07.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:07.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:07.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:07.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:07.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:07.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:07.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:07.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:07.451][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-04-19 16:04:07.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:07.453][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2025-04-19 16:04:07.454][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:07.455][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:07.456][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:07.457][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:07.458][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:07.459][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:07.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:07.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:07.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:07.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:07.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:07.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:07.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:07.471][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2025-04-19 16:04:07.473][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:07.474][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:07.476][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2025-04-19 16:04:07.828][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2025-04-19 16:04:08.209][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:08.211][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2025-04-19 16:04:08.214][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2025-04-19 16:04:08.216][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2025-04-19 16:04:08.218][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:08.219][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:08.220][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:08.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:08.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:08.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:08.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:08.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:08.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:08.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:08.234][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:08.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:08.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:08.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:08.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.240][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:08.241][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:08.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:08.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:08.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.247][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:08.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:08.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:08.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:08.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.254][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:08.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:08.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:08.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:08.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.260][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:08.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:08.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:08.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:08.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.266][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:08.267][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:08.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.269][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:08.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:08.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.272][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:08.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:08.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.276][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:08.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:08.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:08.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:08.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.282][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:08.283][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:08.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:08.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:08.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.289][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:08.290][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:08.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:08.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:08.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.296][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:08.296][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:08.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:08.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:08.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:08.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:08.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:08.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:08.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:08.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:08.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:08.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:08.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:08.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:08.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:08.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:08.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:08.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:08.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:08.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:08.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:08.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:08.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:08.343][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-04-19 16:04:08.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:08.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:08.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:08.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:08.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:08.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:08.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:08.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:08.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:08.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:08.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:08.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:08.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:08.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:08.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:08.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:08.361][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-04-19 16:04:08.362][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:08.363][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2025-04-19 16:04:08.364][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:08.365][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:08.365][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:08.366][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:08.367][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:08.368][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:08.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:08.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:08.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:08.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:08.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:08.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:08.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:08.379][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2025-04-19 16:04:08.381][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:08.382][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:08.383][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2025-04-19 16:04:08.714][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2025-04-19 16:04:09.049][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:09.051][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2025-04-19 16:04:09.054][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2025-04-19 16:04:09.056][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2025-04-19 16:04:09.057][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:09.058][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:09.059][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:09.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:09.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:09.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:09.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:09.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:09.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:09.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:09.071][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.077][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:09.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:09.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:09.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:09.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:09.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:09.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:09.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:09.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:09.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:09.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:09.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:09.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.097][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:09.097][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:09.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:09.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:09.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:09.104][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:09.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.106][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:09.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:09.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.109][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:09.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:09.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.119][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:09.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:09.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:09.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:09.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.126][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:09.127][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:09.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.129][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:09.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:09.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.133][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:09.134][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:09.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:09.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:09.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:09.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:09.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:09.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:09.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:09.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:09.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:09.172][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-04-19 16:04:09.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:09.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:09.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:09.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:09.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:09.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:09.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:09.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:09.191][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-04-19 16:04:09.192][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:09.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2025-04-19 16:04:09.194][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:09.195][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:09.196][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:09.197][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:09.198][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:09.199][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:09.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:09.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:09.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:09.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:09.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:09.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:09.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:09.211][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2025-04-19 16:04:09.213][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:09.214][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:09.215][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2025-04-19 16:04:09.547][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2025-04-19 16:04:09.894][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:09.896][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2025-04-19 16:04:09.899][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2025-04-19 16:04:09.901][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2025-04-19 16:04:09.903][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:09.904][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:09.905][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:09.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:09.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:09.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:09.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:09.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:09.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:09.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:09.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:09.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:09.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.924][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:09.925][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:09.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.927][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:09.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:09.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.930][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:09.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:09.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:09.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:09.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:09.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:09.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:09.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:09.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:09.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:09.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.964][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:09.964][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:09.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.967][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:09.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:09.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.971][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:09.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:09.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.974][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:09.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:09.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:09.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.984][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:09.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:09.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:09.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:09.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.991][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:09.992][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:09.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:09.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:09.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:09.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:09.997][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:09.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:09.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:10.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:10.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:10.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:10.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:10.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:10.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:10.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:10.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:10.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:10.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:10.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.037][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-04-19 16:04:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.068][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:10.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.087][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.088][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.097][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.102][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-04-19 16:04:10.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.131][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.132][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.132][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.133][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.142][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.146][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.157][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-04-19 16:04:10.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.174][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.175][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.176][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.185][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.189][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.200][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-04-19 16:04:10.201][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:10.202][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:10.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:10.234][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:10.236][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:10.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-19 16:04:10.238][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:10.240][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-19 16:04:10.242][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:10.245][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:10.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-19 16:04:10.247][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:10.248][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-19 16:04:10.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.315][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:10.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.333][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.334][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.335][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.344][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.348][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.359][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-19 16:04:10.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.377][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.388][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.393][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.404][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:04:10.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.421][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.432][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.436][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-19 16:04:10.448][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:10.449][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:10.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:10.461][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:10.464][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:10.465][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-19 16:04:10.466][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:10.468][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-19 16:04:10.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.531][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:10.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.549][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.550][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.551][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.566][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.570][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.592][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:04:10.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.611][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.612][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.613][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.622][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.626][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.637][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-19 16:04:10.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.654][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.665][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-19 16:04:10.681][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:10.682][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:10.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:10.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:10.697][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:10.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-19 16:04:10.699][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:10.700][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-19 16:04:10.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:10.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:10.762][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:10.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.782][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.792][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.796][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-19 16:04:10.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.826][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.826][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.827][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.836][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.840][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.851][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-19 16:04:10.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:10.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.876][private$selectFields]
biodb.TRACE[2025-04-19 16:04:10.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:10.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:10.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.886][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:10.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.890][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:10.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:10.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:10.901][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-19 16:04:10.902][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:10.903][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:10.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:10.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:10.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:10.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:10.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:10.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:10.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:10.934][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:10.936][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:10.937][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:10.939][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:04:11.275][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:04:11.614][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:11.616][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2025-04-19 16:04:11.620][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2025-04-19 16:04:11.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:11.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:11.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:11.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:11.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:11.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:11.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:11.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:11.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:11.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:11.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:11.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:11.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:11.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:11.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:11.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:11.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:11.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:11.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:11.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:11.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:11.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:11.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:11.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:11.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:11.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:11.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:11.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:11.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:11.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:11.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:11.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:11.673][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-04-19 16:04:11.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:11.674][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2025-04-19 16:04:11.675][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:11.676][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:11.677][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:11.678][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:11.679][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:11.680][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:11.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:11.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:11.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:11.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:11.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:11.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:11.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:11.692][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2025-04-19 16:04:11.694][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:11.695][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:11.696][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2025-04-19 16:04:12.029][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2025-04-19 16:04:12.371][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:12.373][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2025-04-19 16:04:12.376][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2025-04-19 16:04:12.378][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2025-04-19 16:04:12.379][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:12.380][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:12.381][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:12.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:12.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:12.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:12.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:12.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:12.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:12.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:12.392][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:12.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:12.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:12.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:12.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.399][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:12.399][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:12.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.402][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.405][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:12.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:12.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:12.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:12.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:12.412][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:12.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:12.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:12.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:12.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:12.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.424][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:12.425][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:12.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.427][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:12.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:12.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.430][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:12.431][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:12.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.433][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:12.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:12.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:12.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:12.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:12.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:12.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.443][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:12.443][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:12.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:12.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.449][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:12.449][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:12.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.452][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:12.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:12.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.455][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:12.456][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:12.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:12.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:12.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:12.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:12.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:12.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:12.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:12.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:12.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:12.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:12.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:12.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:12.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:12.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:12.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:12.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:12.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:12.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:12.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:12.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:12.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:12.491][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-04-19 16:04:12.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:12.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:12.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:12.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:12.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:12.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:12.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:12.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:12.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:12.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:12.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:12.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:12.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:12.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:12.521][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-04-19 16:04:12.522][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:12.523][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2025-04-19 16:04:12.524][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:12.525][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:12.526][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:12.526][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:12.527][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:12.528][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:12.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:12.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:12.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:12.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:12.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:12.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:12.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:12.539][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2025-04-19 16:04:12.541][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:12.541][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:12.543][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2025-04-19 16:04:12.872][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2025-04-19 16:04:13.214][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:13.216][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2025-04-19 16:04:13.219][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2025-04-19 16:04:13.221][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2025-04-19 16:04:13.223][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:13.224][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:13.225][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:13.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:13.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:13.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:13.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:13.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:13.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:13.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:13.237][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:13.238][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:13.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:13.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:13.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.244][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:13.245][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:13.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.251][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:13.252][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:13.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:13.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:13.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:13.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:13.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:13.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:13.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:13.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:13.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:13.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:13.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:13.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:13.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:13.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:13.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.278][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:13.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:13.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.281][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:13.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:13.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:13.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:13.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.291][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:13.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:13.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:13.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:13.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.299][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:13.300][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:13.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:13.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:13.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.305][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:13.306][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:13.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:13.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:13.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:13.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:13.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:13.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:13.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:13.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:13.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:13.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:13.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:13.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:13.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:13.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:13.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:13.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:13.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:13.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:13.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:13.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:13.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:13.346][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-04-19 16:04:13.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:13.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:13.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:13.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:13.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:13.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:13.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:13.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:13.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:13.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:13.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:13.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:13.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:13.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:13.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:13.367][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-04-19 16:04:13.368][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:13.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2025-04-19 16:04:13.370][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:13.371][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:13.372][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:13.373][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:13.374][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:13.375][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:13.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:13.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:13.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:13.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:13.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:13.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:13.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:13.387][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2025-04-19 16:04:13.389][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:13.390][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:13.391][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2025-04-19 16:04:13.722][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2025-04-19 16:04:14.070][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:14.072][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2025-04-19 16:04:14.076][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2025-04-19 16:04:14.078][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2025-04-19 16:04:14.079][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:14.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:14.082][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:14.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:14.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:14.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:14.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:14.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:14.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:14.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:14.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.101][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:14.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:14.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:14.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:14.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.108][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:14.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:14.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:14.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:14.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.115][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:14.116][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:14.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:14.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:14.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.122][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:14.123][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:14.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:14.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:14.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:14.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:14.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:14.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:14.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.137][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:14.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:14.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.153][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:14.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:14.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:14.157][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:14.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:14.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:14.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.163][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:14.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:14.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:14.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:14.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.170][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:14.171][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:14.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:14.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:14.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.177][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:14.178][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:14.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:14.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:14.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:14.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:14.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:14.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:14.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:14.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:14.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:14.215][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-04-19 16:04:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:14.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:14.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:14.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:14.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:14.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:14.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:14.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:14.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:14.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:14.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:14.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:14.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:14.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:14.236][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-04-19 16:04:14.237][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:14.239][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2025-04-19 16:04:14.240][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:14.241][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:14.242][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:14.243][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:14.244][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:14.244][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:14.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:14.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:14.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:14.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:14.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:14.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:14.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:14.257][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2025-04-19 16:04:14.259][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:14.260][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:14.261][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2025-04-19 16:04:14.599][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2025-04-19 16:04:14.942][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:14.944][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2025-04-19 16:04:14.947][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2025-04-19 16:04:14.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2025-04-19 16:04:14.951][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:14.952][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:14.953][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:14.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:14.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:14.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:14.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:14.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:14.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:14.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:14.966][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:14.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:14.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.973][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:14.974][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:14.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:14.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.980][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:14.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:14.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:14.988][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:14.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:14.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:14.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:14.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:14.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:14.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:15.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:15.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:15.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:15.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.008][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:15.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:15.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.011][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:15.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:15.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.021][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:15.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:15.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:15.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:15.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.028][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:15.029][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:15.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:15.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:15.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:15.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:15.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.038][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:15.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:15.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:15.076][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-04-19 16:04:15.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:15.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:15.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:15.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:15.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:15.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:15.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:15.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:15.097][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-04-19 16:04:15.098][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:15.099][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2025-04-19 16:04:15.100][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:15.101][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:15.102][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:15.102][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:15.103][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:15.104][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:15.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:15.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:15.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:15.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:15.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:15.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:15.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:15.116][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2025-04-19 16:04:15.128][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:15.129][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:15.130][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2025-04-19 16:04:15.462][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2025-04-19 16:04:15.799][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:15.801][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2025-04-19 16:04:15.804][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2025-04-19 16:04:15.806][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2025-04-19 16:04:15.807][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:15.808][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:15.809][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:15.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:15.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:15.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:15.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:15.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:15.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:15.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:15.821][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.828][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:15.828][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:15.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:15.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:15.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.834][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:15.834][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:15.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:15.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:15.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:15.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:15.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:15.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:15.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:15.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:15.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:15.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.855][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:15.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:15.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.858][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:15.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:15.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.861][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.862][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.868][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:15.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:15.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:15.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:15.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.875][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:15.876][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:15.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.879][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:15.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:15.883][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:15.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:15.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:15.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:15.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:15.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:15.923][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-04-19 16:04:15.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:15.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:15.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:15.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:15.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:15.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:15.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:15.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:15.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:15.952][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:15.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:15.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:15.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:15.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:15.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:15.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:15.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:15.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.969][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:15.970][private$selectFields]
biodb.TRACE[2025-04-19 16:04:15.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:15.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:15.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:15.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:15.979][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:15.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.982][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:15.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:15.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:15.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:15.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-19 16:04:15.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:15.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:15.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:15.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:15.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:16.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:16.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:16.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.008][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:16.008][private$selectFields]
biodb.TRACE[2025-04-19 16:04:16.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:16.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:16.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:16.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:16.019][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:16.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.022][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.032][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:04:16.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:16.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:16.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:16.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:16.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:16.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:16.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:16.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.048][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:16.049][private$selectFields]
biodb.TRACE[2025-04-19 16:04:16.049][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:16.050][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:16.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:16.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.055][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.058][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:16.058][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:16.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.071][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:16.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:16.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:16.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:16.081][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-19 16:04:16.082][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:16.083][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:16.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:16.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:16.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:16.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:16.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:16.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:16.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:16.094][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:16.097][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:16.097][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:16.099][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-19 16:04:16.530][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-19 16:04:17.200][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:17.202][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2025-04-19 16:04:17.205][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2025-04-19 16:04:17.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:17.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:17.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:17.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:17.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:17.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:17.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:17.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:17.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:17.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:17.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:17.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:17.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:17.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:17.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:17.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:17.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:17.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:17.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:17.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:17.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:17.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:17.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:17.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:17.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:17.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:17.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:17.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:17.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:17.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:17.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:17.264][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-04-19 16:04:17.265][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:17.266][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2025-04-19 16:04:17.267][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:17.268][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:17.269][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:17.270][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:17.271][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:17.271][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:17.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:17.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:17.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:17.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:17.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:17.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:17.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:17.283][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2025-04-19 16:04:17.286][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:17.297][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:17.298][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2025-04-19 16:04:17.630][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2025-04-19 16:04:17.966][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:17.968][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2025-04-19 16:04:17.972][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2025-04-19 16:04:17.974][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2025-04-19 16:04:17.976][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:17.977][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:17.978][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:17.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:17.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:17.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:17.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:17.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:17.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:17.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:17.990][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:17.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:17.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:17.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:17.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:17.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:17.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:17.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:17.997][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:17.998][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:17.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.001][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:18.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:18.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.005][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:18.006][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:18.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:18.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:18.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:18.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:18.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:18.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:18.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:18.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:18.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:18.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:18.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.026][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:18.027][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:18.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.030][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:18.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:18.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.038][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.044][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:18.045][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:18.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:18.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.051][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:18.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:18.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.055][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:18.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:18.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:18.059][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:18.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:18.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:18.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:18.098][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-04-19 16:04:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:18.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:18.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:18.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:18.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:18.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:18.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:18.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:18.132][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-04-19 16:04:18.132][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:18.134][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2025-04-19 16:04:18.135][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:18.136][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:18.137][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:18.138][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:18.138][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:18.139][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:18.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:18.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:18.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:18.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:18.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:18.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:18.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:18.151][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2025-04-19 16:04:18.166][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:18.167][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:18.168][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2025-04-19 16:04:18.501][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2025-04-19 16:04:18.841][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:18.843][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2025-04-19 16:04:18.847][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2025-04-19 16:04:18.849][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2025-04-19 16:04:18.851][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:18.852][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:18.853][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:18.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:18.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:18.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:18.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:18.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:18.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:18.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:18.865][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.866][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.872][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:18.873][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:18.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:18.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:18.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.879][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:18.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:18.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:18.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:18.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:18.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:18.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:18.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:18.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:18.893][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:18.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:18.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:18.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:18.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:18.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.903][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:18.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:18.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.907][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:18.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:18.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.918][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:18.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:18.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:18.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.925][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:18.926][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:18.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.929][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:18.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:18.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.932][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:18.933][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:18.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:18.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:18.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:18.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:18.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:18.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:18.975][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-04-19 16:04:18.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:18.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:18.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:18.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:18.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:18.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:18.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:18.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:18.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:18.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:18.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:18.995][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-04-19 16:04:18.996][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:18.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2025-04-19 16:04:18.999][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:19.000][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:19.001][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:19.001][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:19.002][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:19.003][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:19.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:19.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:19.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:19.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:19.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:19.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:19.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:19.015][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2025-04-19 16:04:19.017][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:19.018][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:19.019][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2025-04-19 16:04:19.352][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2025-04-19 16:04:19.740][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:19.742][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2025-04-19 16:04:19.745][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2025-04-19 16:04:19.747][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2025-04-19 16:04:19.748][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:19.749][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:19.750][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:19.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:19.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:19.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:19.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:19.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:19.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:19.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:19.761][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:19.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:19.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:19.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:19.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.767][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:19.768][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:19.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:19.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:19.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.773][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:19.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:19.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:19.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:19.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:19.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:19.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:19.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:19.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.786][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:19.787][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:19.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:19.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:19.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.792][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:19.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:19.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.795][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:19.796][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:19.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.799][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:19.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:19.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:19.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:19.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:19.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:19.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.808][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:19.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:19.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:19.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:19.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.814][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:19.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:19.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:19.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:19.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.821][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:19.821][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:19.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:19.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:19.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:19.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:19.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:19.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:19.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:19.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:19.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:19.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:19.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:19.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:19.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:19.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:19.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:19.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:19.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:19.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:19.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:19.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:19.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:19.870][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-04-19 16:04:19.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:19.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:19.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:19.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:19.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:19.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:19.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:19.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:19.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:19.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:19.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:19.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:19.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:19.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:19.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:19.889][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-04-19 16:04:19.889][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:19.891][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2025-04-19 16:04:19.891][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:19.892][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:19.893][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:19.894][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:19.895][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:19.895][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:19.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:19.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:19.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:19.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:19.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:19.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:19.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:19.906][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2025-04-19 16:04:19.908][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:19.909][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:19.910][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2025-04-19 16:04:20.478][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2025-04-19 16:04:20.822][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:20.823][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2025-04-19 16:04:20.827][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2025-04-19 16:04:20.829][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2025-04-19 16:04:20.831][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:20.832][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:20.833][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:20.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:20.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:20.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:20.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:20.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:20.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:20.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:20.846][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:20.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:20.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:20.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:20.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.853][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:20.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:20.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:20.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:20.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.859][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:20.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:20.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:20.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:20.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:20.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:20.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:20.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:20.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:20.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:20.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:20.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:20.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.880][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:20.881][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:20.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.883][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:20.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:20.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.887][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:20.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:20.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.890][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:20.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:20.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:20.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:20.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.897][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:20.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:20.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:20.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:20.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.904][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:20.905][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:20.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:20.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:20.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.910][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:20.911][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:20.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:20.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:20.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:20.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:20.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:20.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:20.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:20.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:20.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:20.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:20.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:20.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:20.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:20.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:20.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:20.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:20.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:20.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:20.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:20.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:20.950][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-04-19 16:04:20.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:20.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:20.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:20.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:20.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:20.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:20.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:20.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:20.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:20.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:20.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:20.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:20.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:20.971][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-04-19 16:04:20.972][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:20.974][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2025-04-19 16:04:20.975][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:20.975][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:20.977][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:20.978][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:20.979][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:20.979][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:20.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:20.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:20.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:20.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:20.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:20.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:20.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:20.992][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2025-04-19 16:04:20.994][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:20.995][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:20.996][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2025-04-19 16:04:21.329][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2025-04-19 16:04:21.665][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:21.666][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2025-04-19 16:04:21.669][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2025-04-19 16:04:21.672][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2025-04-19 16:04:21.673][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:21.674][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:21.675][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:21.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:21.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:21.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:21.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:21.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:21.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:21.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:21.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:21.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:21.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:21.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:21.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.695][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:21.695][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:21.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.698][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:21.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:21.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.701][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:21.702][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:21.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:21.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:21.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:21.721][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:21.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:21.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:21.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.727][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:21.728][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:21.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:21.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.734][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:21.734][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:21.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.737][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:21.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:21.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.741][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:21.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:21.744][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:21.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:21.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:21.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.750][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:21.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:21.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.757][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:21.758][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:21.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:21.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.764][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:21.765][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:21.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:21.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:21.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:21.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:21.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:21.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:21.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:21.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:21.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:21.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:21.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:21.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:21.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:21.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:21.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:21.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:21.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:21.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:21.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:21.804][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-04-19 16:04:21.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:21.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:21.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:21.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:21.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:21.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:21.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:21.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:21.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:21.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:21.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:21.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:21.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:21.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:21.825][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-04-19 16:04:21.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:21.827][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2025-04-19 16:04:21.828][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:21.829][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:21.829][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:21.830][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:21.831][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:21.832][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:21.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:21.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:21.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:21.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:21.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:21.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:21.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:21.844][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2025-04-19 16:04:21.846][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:21.847][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:21.848][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2025-04-19 16:04:22.183][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2025-04-19 16:04:22.524][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:22.526][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2025-04-19 16:04:22.530][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2025-04-19 16:04:22.532][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2025-04-19 16:04:22.533][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:22.534][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:22.535][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:22.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:22.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:22.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:22.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:22.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:22.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:22.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:22.547][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:22.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:22.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:22.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:22.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.554][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:22.555][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:22.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:22.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.562][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:22.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:22.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:22.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:22.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:22.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:22.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:22.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:22.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:22.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:22.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:22.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.583][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:22.584][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:22.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.587][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:22.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:22.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.590][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:22.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:22.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:22.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:22.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:22.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.600][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:22.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:22.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:22.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:22.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.607][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:22.608][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:22.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.611][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:22.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:22.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.614][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:22.615][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:22.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:22.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:22.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:22.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:22.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:22.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:22.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:22.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:22.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:22.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:22.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:22.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:22.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:22.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:22.670][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-04-19 16:04:22.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:22.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:22.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:22.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:22.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:22.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:22.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:22.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:22.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:22.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:22.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:22.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:22.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:22.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:22.695][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-04-19 16:04:22.705][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:22.707][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2025-04-19 16:04:22.709][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:22.710][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:22.711][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:22.712][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:22.712][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:22.713][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:22.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:22.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:22.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:22.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:22.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:22.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:22.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:22.726][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2025-04-19 16:04:22.728][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:22.729][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:22.730][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2025-04-19 16:04:23.062][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2025-04-19 16:04:23.398][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:23.400][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2025-04-19 16:04:23.403][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2025-04-19 16:04:23.405][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2025-04-19 16:04:23.407][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:23.408][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:23.408][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:23.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:23.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:23.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:23.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:23.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:23.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:23.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:23.419][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:23.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:23.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:23.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:23.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.426][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:23.427][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:23.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:23.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:23.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.432][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:23.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:23.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:23.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:23.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.438][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:23.439][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:23.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:23.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:23.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:23.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:23.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:23.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.451][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:23.452][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:23.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.454][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:23.455][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:23.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.459][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:23.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:23.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.463][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:23.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:23.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:23.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:23.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.469][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:23.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:23.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:23.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:23.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.476][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:23.477][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:23.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:23.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:23.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:23.483][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:23.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:23.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:23.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:23.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:23.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:23.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:23.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:23.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:23.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:23.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:23.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:23.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:23.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:23.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:23.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:23.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:23.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:23.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:23.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:23.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:23.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:23.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:23.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:23.520][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-04-19 16:04:23.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:23.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:23.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:23.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:23.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:23.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:23.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:23.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:23.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:23.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:23.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:23.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:23.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:23.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:23.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:23.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:23.540][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-04-19 16:04:23.540][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:23.542][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2025-04-19 16:04:23.543][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:23.544][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:23.544][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:23.545][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:23.546][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:23.547][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:23.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:23.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:23.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:23.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:23.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:23.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:23.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:23.558][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2025-04-19 16:04:23.561][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:23.561][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:23.563][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2025-04-19 16:04:24.141][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2025-04-19 16:04:24.479][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:24.481][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2025-04-19 16:04:24.485][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2025-04-19 16:04:24.487][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2025-04-19 16:04:24.489][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:24.490][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:24.491][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:24.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:24.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:24.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:24.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:24.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:24.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:24.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:24.505][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:24.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:24.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:24.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:24.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.512][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:24.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:24.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:24.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:24.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.519][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:24.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:24.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:24.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:24.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:24.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:24.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:24.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:24.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:24.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:24.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:24.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:24.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.556][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:24.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:24.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.560][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:24.561][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:24.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.564][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:24.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:24.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.569][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:24.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:24.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.576][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:24.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:24.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.583][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:24.584][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:24.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.587][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:24.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:24.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.602][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:24.603][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:24.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:24.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:24.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:24.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:24.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:24.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:24.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:24.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:24.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:24.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:24.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:24.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:24.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:24.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:24.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:24.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:24.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:24.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:24.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:24.643][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-04-19 16:04:24.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:24.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:24.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:24.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:24.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:24.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:24.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:24.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:24.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:24.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:24.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:24.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:24.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:24.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:24.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:24.664][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-04-19 16:04:24.664][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:24.666][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2025-04-19 16:04:24.667][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:24.668][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:24.669][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:24.669][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:24.670][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:24.671][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:24.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:24.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:24.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:24.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:24.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:24.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:24.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:24.683][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2025-04-19 16:04:24.685][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:24.686][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:24.688][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2025-04-19 16:04:25.021][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2025-04-19 16:04:25.353][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:25.361][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2025-04-19 16:04:25.364][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2025-04-19 16:04:25.370][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2025-04-19 16:04:25.373][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:25.374][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:25.376][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:25.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:25.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:25.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:25.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:25.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:25.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:25.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:25.389][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:25.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:25.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:25.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:25.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.396][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:25.397][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:25.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:25.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:25.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.403][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:25.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:25.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:25.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:25.411][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:25.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:25.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:25.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.418][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:25.418][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:25.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.421][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:25.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:25.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.425][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:25.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:25.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.428][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:25.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:25.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:25.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:25.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.435][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:25.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:25.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:25.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:25.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.442][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:25.443][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:25.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:25.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:25.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.449][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:25.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:25.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:25.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:25.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:25.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:25.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:25.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:25.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:25.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:25.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:25.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:25.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:25.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:25.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:25.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:25.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:25.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:25.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:25.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:25.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:25.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:25.490][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-04-19 16:04:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:25.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:25.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:25.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:25.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:25.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:25.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:25.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:25.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:25.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:25.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:25.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:25.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:25.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:25.511][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-04-19 16:04:25.512][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:25.513][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2025-04-19 16:04:25.514][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:25.515][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:25.516][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:25.517][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:25.518][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:25.518][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:25.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:25.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:25.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:25.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:25.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:25.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:25.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:25.531][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2025-04-19 16:04:25.534][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:25.534][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:25.536][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2025-04-19 16:04:25.872][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2025-04-19 16:04:26.204][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:26.206][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2025-04-19 16:04:26.210][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2025-04-19 16:04:26.212][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2025-04-19 16:04:26.213][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:26.215][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:26.216][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:26.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:26.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:26.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:26.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:26.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:26.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:26.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:26.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:26.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:26.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:26.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:26.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.246][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:26.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:26.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.253][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:26.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:26.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.260][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:26.261][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:26.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:26.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:26.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.267][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:26.268][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:26.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.270][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:26.271][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:26.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:26.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:26.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:26.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:26.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:26.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:26.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.284][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:26.284][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:26.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.290][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:26.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:26.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:26.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:26.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:26.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:26.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:26.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:26.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:26.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:26.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:26.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:26.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:26.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:26.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:26.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:26.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:26.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:26.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:26.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:26.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:26.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:26.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:26.336][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-04-19 16:04:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:26.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:26.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:26.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:26.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:26.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:26.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:26.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:26.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:26.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:26.356][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-04-19 16:04:26.357][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:26.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2025-04-19 16:04:26.360][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:26.361][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:26.362][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:26.363][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:26.364][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:26.364][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:26.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:26.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:26.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:26.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:26.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:26.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:26.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:26.377][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2025-04-19 16:04:26.379][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:26.380][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:26.382][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2025-04-19 16:04:26.715][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2025-04-19 16:04:27.054][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:27.056][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2025-04-19 16:04:27.059][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2025-04-19 16:04:27.061][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2025-04-19 16:04:27.063][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:27.064][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:27.064][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:27.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:27.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:27.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:27.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:27.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:27.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:27.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:27.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:27.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:27.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.083][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:27.083][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:27.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:27.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.089][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:27.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:27.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:27.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:27.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.096][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:27.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:27.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:27.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:27.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:27.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:27.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.109][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:27.110][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:27.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.112][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:27.113][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:27.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.116][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:27.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:27.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:27.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:27.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.126][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:27.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:27.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:27.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.132][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:27.133][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:27.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.135][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:27.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:27.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.139][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:27.140][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:27.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:27.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:27.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:27.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:27.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:27.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:27.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:27.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:27.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:27.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:27.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:27.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:27.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:27.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:27.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:27.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:27.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:27.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:27.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:27.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:27.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:27.178][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-04-19 16:04:27.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:27.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:27.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:27.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:27.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:27.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:27.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:27.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:27.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:27.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:27.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:27.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:27.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:27.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:27.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:27.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:27.207][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-04-19 16:04:27.208][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:27.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2025-04-19 16:04:27.210][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:27.211][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:27.212][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:27.213][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:27.213][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:27.214][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:27.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:27.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:27.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:27.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:27.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:27.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:27.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:27.225][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2025-04-19 16:04:27.227][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:27.227][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:27.228][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2025-04-19 16:04:27.634][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2025-04-19 16:04:28.070][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:28.072][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2025-04-19 16:04:28.075][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2025-04-19 16:04:28.078][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2025-04-19 16:04:28.079][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:28.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:28.081][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:28.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:28.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:28.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:28.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:28.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:28.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:28.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:28.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.100][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:28.101][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:28.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.104][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:28.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:28.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.107][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:28.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:28.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:28.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.114][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:28.115][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:28.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:28.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:28.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:28.122][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:28.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:28.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:28.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.128][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:28.129][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:28.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.131][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:28.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:28.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.135][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:28.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:28.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.139][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.145][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:28.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:28.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:28.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:28.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:28.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:28.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:28.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:28.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:28.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:28.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:28.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:28.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:28.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:28.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:28.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:28.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:28.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:28.201][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-04-19 16:04:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:28.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:28.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:28.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:28.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:28.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:28.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:28.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:28.221][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-04-19 16:04:28.222][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:28.224][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2025-04-19 16:04:28.225][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:28.226][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:28.226][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:28.227][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:28.228][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:28.229][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:28.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:28.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:28.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:28.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:28.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:28.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:28.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:28.241][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2025-04-19 16:04:28.243][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:28.244][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:28.245][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2025-04-19 16:04:28.574][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2025-04-19 16:04:28.906][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:28.908][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2025-04-19 16:04:28.911][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2025-04-19 16:04:28.914][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2025-04-19 16:04:28.915][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:28.916][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:28.917][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:28.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:28.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:28.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:28.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:28.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:28.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:28.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:28.930][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:28.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.936][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:28.937][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:28.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:28.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:28.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.943][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:28.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:28.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:28.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:28.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:28.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:28.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:28.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.958][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:28.959][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:28.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:28.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:28.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.964][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:28.965][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:28.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.968][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:28.969][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:28.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.972][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:28.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:28.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.982][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:28.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:28.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:28.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:28.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:29.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.002][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:29.003][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:29.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:29.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:29.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.009][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:29.010][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:29.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:29.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:29.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:29.047][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-04-19 16:04:29.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:29.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:29.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:29.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:29.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:29.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:29.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:29.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:29.068][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-04-19 16:04:29.069][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:29.070][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2025-04-19 16:04:29.071][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:29.072][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:29.072][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:29.074][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:29.074][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:29.075][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:29.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:29.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:29.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:29.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:29.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:29.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:29.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:29.088][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2025-04-19 16:04:29.090][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:29.091][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:29.092][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2025-04-19 16:04:29.423][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2025-04-19 16:04:29.765][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:29.767][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2025-04-19 16:04:29.770][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2025-04-19 16:04:29.772][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2025-04-19 16:04:29.774][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:29.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:29.777][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:29.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:29.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:29.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:29.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:29.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:29.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:29.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:29.790][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.797][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:29.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:29.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.801][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:29.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:29.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.804][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:29.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:29.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:29.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:29.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:29.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:29.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:29.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:29.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:29.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:29.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:29.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:29.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:29.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:29.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.828][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:29.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:29.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.832][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:29.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.835][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.842][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:29.843][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:29.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:29.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:29.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.849][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:29.850][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:29.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:29.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.857][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:29.857][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:29.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:29.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:29.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:29.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:29.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:29.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:29.896][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-04-19 16:04:29.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:29.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:29.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:29.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:29.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:29.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:29.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:29.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:29.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:29.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:29.918][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-04-19 16:04:29.918][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:29.920][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2025-04-19 16:04:29.921][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:29.922][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:29.923][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:29.923][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:29.934][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:29.935][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:29.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:29.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:29.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:29.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:29.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:29.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:29.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:29.953][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2025-04-19 16:04:29.956][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:29.957][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:29.958][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2025-04-19 16:04:30.290][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2025-04-19 16:04:30.626][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:30.628][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2025-04-19 16:04:30.631][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2025-04-19 16:04:30.633][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2025-04-19 16:04:30.635][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:30.636][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:30.637][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:30.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:30.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:30.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:30.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:30.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:30.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:30.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:30.668][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:30.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:30.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:30.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:30.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.675][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:30.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:30.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:30.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:30.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.681][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:30.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:30.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:30.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:30.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:30.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:30.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:30.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:30.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:30.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:30.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:30.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:30.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.700][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:30.701][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:30.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.703][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:30.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:30.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.707][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:30.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:30.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:30.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:30.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:30.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:30.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.717][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:30.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:30.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:30.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:30.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.723][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:30.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:30.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:30.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:30.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:30.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:30.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:30.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:30.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:30.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:30.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:30.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:30.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:30.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:30.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:30.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:30.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:30.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:30.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:30.768][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-04-19 16:04:30.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:30.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:30.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:30.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:30.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:30.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:30.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:30.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:30.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:30.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:30.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:30.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:30.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:30.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:30.786][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-04-19 16:04:30.787][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:30.789][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2025-04-19 16:04:30.790][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:30.791][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:30.792][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:30.793][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:30.793][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:30.794][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:30.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:30.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:30.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:30.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:30.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:30.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:30.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:30.806][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2025-04-19 16:04:30.808][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:30.809][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:30.810][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2025-04-19 16:04:31.143][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2025-04-19 16:04:31.490][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:31.492][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2025-04-19 16:04:31.495][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2025-04-19 16:04:31.497][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2025-04-19 16:04:31.499][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:31.500][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:31.501][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:31.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:31.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:31.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:31.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:31.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:31.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:31.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:31.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:31.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:31.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.519][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:31.520][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:31.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.523][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:31.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:31.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.527][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:31.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:31.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:31.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:31.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:31.534][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:31.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:31.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:31.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:31.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:31.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:31.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.547][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:31.548][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:31.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.551][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:31.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:31.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.554][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:31.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:31.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:31.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:31.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.560][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:31.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:31.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.565][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:31.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:31.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:31.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.572][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:31.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:31.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:31.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:31.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.579][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:31.580][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:31.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:31.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:31.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:31.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:31.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:31.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:31.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:31.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:31.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:31.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:31.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:31.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:31.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:31.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:31.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:31.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:31.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:31.630][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-04-19 16:04:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:31.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:31.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:31.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:31.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:31.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:31.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:31.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:31.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:31.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:31.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:31.651][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-04-19 16:04:31.652][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:31.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2025-04-19 16:04:31.655][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:31.656][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:31.657][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:31.657][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:31.658][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:31.659][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:31.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:31.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:31.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:31.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:31.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:31.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:31.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:31.671][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2025-04-19 16:04:31.673][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:31.674][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:31.675][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2025-04-19 16:04:32.021][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2025-04-19 16:04:32.358][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:32.360][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2025-04-19 16:04:32.363][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2025-04-19 16:04:32.365][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2025-04-19 16:04:32.367][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:32.368][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:32.369][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:32.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:32.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:32.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:32.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:32.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:32.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:32.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:32.381][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:32.382][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:32.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.387][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:32.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:32.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:32.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.394][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:32.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:32.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:32.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:32.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.401][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:32.402][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:32.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:32.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:32.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:32.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:32.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:32.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:32.416][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:32.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.419][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:32.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:32.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.423][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:32.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:32.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:32.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:32.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:32.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:32.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.433][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:32.434][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:32.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.441][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:32.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:32.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:32.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.448][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:32.449][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:32.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:32.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:32.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:32.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:32.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:32.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:32.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:32.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:32.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:32.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:32.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:32.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:32.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:32.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:32.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:32.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:32.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:32.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:32.489][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-04-19 16:04:32.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:32.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:32.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:32.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:32.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:32.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:32.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:32.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:32.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:32.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:32.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:32.510][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-04-19 16:04:32.511][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:32.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2025-04-19 16:04:32.513][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:32.514][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:32.515][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:32.516][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:32.517][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:32.518][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:32.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:32.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:32.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:32.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:32.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:32.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:32.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:32.530][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2025-04-19 16:04:32.533][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:32.533][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:32.535][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2025-04-19 16:04:32.866][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2025-04-19 16:04:33.275][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:33.277][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2025-04-19 16:04:33.280][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2025-04-19 16:04:33.282][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2025-04-19 16:04:33.294][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:33.296][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:33.297][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:33.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:33.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:33.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:33.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:33.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:33.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:33.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:33.313][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:33.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:33.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:33.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.320][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:33.321][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:33.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:33.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:33.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.327][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:33.328][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:33.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:33.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:33.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:33.335][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:33.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:33.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:33.342][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:33.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:33.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:33.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.349][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:33.350][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:33.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.364][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:33.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:33.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.369][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:33.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:33.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:33.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:33.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:33.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:33.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.380][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:33.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:33.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:33.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:33.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.387][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:33.388][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:33.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:33.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:33.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.395][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:33.396][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:33.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:33.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:33.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:33.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:33.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:33.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:33.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:33.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:33.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:33.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:33.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:33.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:33.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:33.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:33.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:33.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:33.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:33.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:33.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:33.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:33.435][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-04-19 16:04:33.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:33.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:33.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:33.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:33.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:33.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:33.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:33.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:33.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:33.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:33.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:33.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:33.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:33.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:33.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:33.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:33.456][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-04-19 16:04:33.457][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:33.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2025-04-19 16:04:33.460][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:33.461][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:33.462][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:33.463][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:33.464][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:33.464][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:33.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:33.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:33.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:33.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:33.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:33.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:33.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:33.477][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2025-04-19 16:04:33.479][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:33.480][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:33.481][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2025-04-19 16:04:33.811][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2025-04-19 16:04:34.299][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:34.301][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2025-04-19 16:04:34.304][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2025-04-19 16:04:34.306][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2025-04-19 16:04:34.308][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:34.309][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:34.310][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:34.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:34.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:34.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:34.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:34.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:34.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:34.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:34.321][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:34.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:34.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:34.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.328][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:34.329][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:34.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:34.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:34.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.334][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:34.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:34.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:34.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:34.342][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:34.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:34.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:34.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:34.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:34.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:34.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:34.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.353][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:34.354][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:34.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.357][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:34.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:34.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.360][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:34.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:34.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:34.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:34.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:34.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.369][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:34.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:34.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:34.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:34.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.375][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:34.376][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:34.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:34.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:34.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.381][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:34.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:34.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:34.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:34.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:34.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:34.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:34.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:34.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:34.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:34.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:34.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:34.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:34.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:34.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:34.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:34.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:34.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:34.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:34.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:34.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:34.417][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-04-19 16:04:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:34.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:34.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:34.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:34.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:34.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:34.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:34.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:34.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:34.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:34.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:34.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:34.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:34.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:34.436][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-04-19 16:04:34.437][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:34.438][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2025-04-19 16:04:34.439][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:34.440][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:34.441][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:34.442][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:34.443][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:34.443][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:34.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:34.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:34.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:34.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:34.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:34.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:34.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:34.454][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2025-04-19 16:04:34.466][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:34.467][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:34.469][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2025-04-19 16:04:34.799][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2025-04-19 16:04:35.140][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:35.141][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2025-04-19 16:04:35.144][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2025-04-19 16:04:35.147][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2025-04-19 16:04:35.149][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:35.150][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:35.151][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:35.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:35.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:35.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:35.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:35.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:35.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:35.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:35.163][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:35.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:35.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:35.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:35.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:35.170][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:35.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:35.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:35.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.176][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:35.177][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:35.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:35.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:35.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:35.184][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:35.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:35.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:35.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:35.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:35.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:35.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:35.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:35.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:35.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.200][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:35.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:35.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.203][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:35.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:35.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:35.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:35.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.213][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:35.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:35.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:35.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:35.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.220][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:35.221][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:35.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:35.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:35.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.227][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:35.228][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:35.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:35.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:35.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:35.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:35.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:35.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:35.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:35.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:35.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:35.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:35.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:35.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:35.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:35.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:35.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:35.266][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-04-19 16:04:35.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:35.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:35.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:35.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:35.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:35.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:35.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:35.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:35.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:35.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:35.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:35.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:35.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:35.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:35.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:35.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:35.287][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-04-19 16:04:35.288][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:35.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2025-04-19 16:04:35.290][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:35.291][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:35.292][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:35.293][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:35.294][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:35.294][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:35.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:35.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:35.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:35.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:35.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:35.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:35.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:35.307][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2025-04-19 16:04:35.309][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:35.310][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:35.311][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2025-04-19 16:04:35.640][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2025-04-19 16:04:35.974][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:35.976][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2025-04-19 16:04:35.979][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2025-04-19 16:04:35.981][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2025-04-19 16:04:35.983][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:35.984][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:35.985][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:35.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:35.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:35.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:35.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:35.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:35.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:35.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:35.997][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:35.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:35.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.004][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:36.005][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:36.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.008][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:36.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:36.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.011][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:36.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:36.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:36.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:36.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:36.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:36.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:36.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:36.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:36.027][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:36.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:36.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:36.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:36.033][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:36.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.036][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:36.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:36.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.039][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:36.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:36.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.050][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:36.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:36.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:36.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:36.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.057][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:36.058][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:36.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.061][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:36.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:36.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.064][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:36.065][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:36.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:36.118][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-04-19 16:04:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:36.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:36.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:36.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:36.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:36.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:36.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:36.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:36.139][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-04-19 16:04:36.140][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:36.142][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2025-04-19 16:04:36.143][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:36.143][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:36.144][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:36.145][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:36.146][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:36.147][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:36.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:36.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:36.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:36.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:36.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:36.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:36.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:36.159][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2025-04-19 16:04:36.161][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:36.162][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:36.163][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2025-04-19 16:04:36.513][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2025-04-19 16:04:36.852][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:36.854][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2025-04-19 16:04:36.857][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2025-04-19 16:04:36.859][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2025-04-19 16:04:36.861][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:36.862][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:36.863][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:36.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:36.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:36.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:36.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:36.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:36.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:36.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:36.875][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.882][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:36.883][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:36.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:36.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.889][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:36.890][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:36.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:36.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.896][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:36.897][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:36.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:36.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:36.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:36.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:36.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:36.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:36.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:36.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:36.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.914][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:36.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:36.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.917][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:36.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:36.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.921][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.922][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.928][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:36.929][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:36.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:36.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:36.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.935][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:36.936][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:36.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.939][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:36.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:36.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:36.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:36.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:36.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:36.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:36.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:36.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:36.983][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-04-19 16:04:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:36.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:36.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:36.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:36.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:36.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:36.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:37.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:37.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:37.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:37.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:37.004][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-04-19 16:04:37.005][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:37.006][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2025-04-19 16:04:37.007][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:37.008][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:37.009][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:37.010][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:37.011][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:37.011][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:37.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:37.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:37.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:37.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:37.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:37.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:37.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:37.024][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2025-04-19 16:04:37.026][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:37.027][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:37.028][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2025-04-19 16:04:37.365][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2025-04-19 16:04:37.699][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:37.701][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2025-04-19 16:04:37.704][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2025-04-19 16:04:37.706][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2025-04-19 16:04:37.707][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:37.708][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:37.709][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:37.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:37.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:37.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:37.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:37.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:37.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:37.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:37.720][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:37.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:37.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:37.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:37.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.726][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:37.727][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:37.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:37.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:37.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.732][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:37.733][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:37.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:37.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:37.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:37.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:37.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.757][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:37.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:37.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:37.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:37.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:37.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:37.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.766][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:37.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:37.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.769][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:37.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:37.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.772][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:37.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:37.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:37.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:37.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.778][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:37.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:37.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:37.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.784][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:37.785][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:37.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:37.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:37.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.790][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:37.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:37.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:37.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:37.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:37.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:37.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:37.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:37.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:37.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:37.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:37.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:37.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:37.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:37.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:37.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:37.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:37.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:37.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:37.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:37.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:37.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:37.825][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-04-19 16:04:37.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:37.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:37.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:37.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:37.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:37.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:37.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:37.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:37.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:37.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:37.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:37.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:37.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:37.843][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-04-19 16:04:37.844][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:37.845][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2025-04-19 16:04:37.846][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:37.847][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:37.848][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:37.849][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:37.849][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:37.850][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:37.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:37.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:37.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:37.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:37.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:37.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:37.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:37.861][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2025-04-19 16:04:37.863][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:37.864][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:37.865][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2025-04-19 16:04:38.195][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2025-04-19 16:04:38.531][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:38.533][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2025-04-19 16:04:38.536][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2025-04-19 16:04:38.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2025-04-19 16:04:38.540][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:38.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:38.542][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:38.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:38.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:38.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:38.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:38.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:38.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:38.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:38.555][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:38.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:38.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.561][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:38.562][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:38.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:38.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:38.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.568][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:38.569][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:38.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:38.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:38.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:38.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:38.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:38.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:38.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:38.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:38.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:38.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.588][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:38.589][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:38.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.591][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:38.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:38.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.595][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:38.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:38.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:38.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:38.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:38.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:38.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.605][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:38.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:38.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.612][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:38.613][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:38.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.616][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:38.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.619][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:38.620][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:38.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:38.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:38.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:38.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:38.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:38.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:38.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:38.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:38.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:38.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:38.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:38.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:38.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:38.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:38.658][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-04-19 16:04:38.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:38.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:38.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:38.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:38.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:38.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:38.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:38.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:38.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:38.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:38.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:38.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:38.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:38.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:38.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:38.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:38.679][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-04-19 16:04:38.686][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:38.691][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2025-04-19 16:04:38.692][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:38.693][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:38.695][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:38.696][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:38.697][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:38.697][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:38.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:38.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:38.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:38.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:38.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:38.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:38.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:38.709][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2025-04-19 16:04:38.712][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:38.713][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:38.714][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2025-04-19 16:04:39.061][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2025-04-19 16:04:39.392][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:39.394][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2025-04-19 16:04:39.397][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2025-04-19 16:04:39.399][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2025-04-19 16:04:39.401][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:39.402][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:39.403][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:39.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:39.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:39.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:39.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:39.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:39.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:39.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:39.414][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:39.415][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:39.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:39.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.421][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:39.422][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:39.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.428][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:39.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:39.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:39.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:39.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.434][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:39.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:39.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:39.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:39.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:39.442][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:39.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:39.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:39.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.448][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:39.449][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:39.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:39.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:39.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.455][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:39.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:39.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.458][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:39.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:39.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:39.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:39.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:39.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.468][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:39.469][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:39.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:39.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.476][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:39.476][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:39.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:39.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:39.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:39.483][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:39.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:39.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:39.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:39.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:39.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:39.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:39.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:39.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:39.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:39.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:39.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:39.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:39.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:39.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:39.522][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-04-19 16:04:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:39.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:39.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:39.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:39.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:39.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:39.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:39.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:39.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:39.542][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-04-19 16:04:39.543][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:04:39.544][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2025-04-19 16:04:39.545][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:04:39.546][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:04:39.547][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:04:39.548][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-19 16:04:39.549][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:04:39.549][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:04:39.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:39.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:39.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:39.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:39.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:39.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:39.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:39.561][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2025-04-19 16:04:39.564][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:04:39.564][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:04:39.565][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2025-04-19 16:04:39.897][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2025-04-19 16:04:40.231][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:04:40.233][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2025-04-19 16:04:40.236][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2025-04-19 16:04:40.238][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2025-04-19 16:04:40.239][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:04:40.240][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:04:40.241][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-19 16:04:40.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.252][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:40.253][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:40.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:40.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.258][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:40.259][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:40.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.264][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:40.265][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:40.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:40.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.271][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:40.272][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:40.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:40.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:40.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:40.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:40.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.285][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:40.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:40.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.288][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:40.289][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:40.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.291][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-19 16:04:40.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.302][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:40.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:40.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:40.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:40.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:40.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:40.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.325][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-19 16:04:40.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.328][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:40.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:40.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:40.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:40.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:40.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:40.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:40.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:40.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:40.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:40.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:40.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.365][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-04-19 16:04:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.413][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:40.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.432][private$selectFields]
biodb.TRACE[2025-04-19 16:04:40.432][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:40.433][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:40.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.442][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.446][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:40.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:04:40.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.475][private$selectFields]
biodb.TRACE[2025-04-19 16:04:40.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:40.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:40.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.485][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.489][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:40.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-19 16:04:40.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.517][private$selectFields]
biodb.TRACE[2025-04-19 16:04:40.518][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:40.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:40.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.527][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.531][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:40.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-19 16:04:40.543][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:40.544][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:40.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:40.556][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:40.559][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:40.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-19 16:04:40.561][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:40.562][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-19 16:04:40.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.649][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:40.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.665][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.666][private$selectFields]
biodb.TRACE[2025-04-19 16:04:40.666][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:40.667][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:40.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.675][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.678][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:40.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-19 16:04:40.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.706][private$selectFields]
biodb.TRACE[2025-04-19 16:04:40.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:40.708][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:40.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.716][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.716][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.720][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:40.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-19 16:04:40.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.748][private$selectFields]
biodb.TRACE[2025-04-19 16:04:40.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:40.749][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:40.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.757][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.758][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.762][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:40.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.773][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:04:40.774][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:40.774][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:40.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:40.804][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:40.807][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:40.808][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-19 16:04:40.809][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:40.810][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-19 16:04:40.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:40.948][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:40.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.964][private$selectFields]
biodb.TRACE[2025-04-19 16:04:40.965][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:40.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:40.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.974][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:40.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.978][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:40.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:40.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:40.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:40.988][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-19 16:04:40.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:40.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:40.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:40.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:40.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:40.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:40.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.006][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.009][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.016][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.020][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.030][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:04:41.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.046][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.047][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.048][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.056][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.060][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.069][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-04-19 16:04:41.070][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:41.071][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:41.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:41.082][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:41.085][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:41.086][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2025-04-19 16:04:41.087][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:41.088][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2025-04-19 16:04:41.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.174][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:41.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.191][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.200][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.204][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.213][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-04-19 16:04:41.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.230][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.239][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.243][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.253][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:04:41.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.270][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.280][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.284][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.294][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-19 16:04:41.295][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:41.296][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:41.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:41.307][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:41.310][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:41.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2025-04-19 16:04:41.312][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:41.314][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2025-04-19 16:04:41.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.413][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:41.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.440][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.441][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.442][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.451][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.455][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.466][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-04-19 16:04:41.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.483][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.484][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.485][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.495][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.499][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-04-19 16:04:41.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.528][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.539][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.543][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.553][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-04-19 16:04:41.554][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:41.555][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:41.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:41.604][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:41.607][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:41.608][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-19 16:04:41.609][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:41.610][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-19 16:04:41.613][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:41.616][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:41.617][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-19 16:04:41.618][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:41.619][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-19 16:04:41.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.681][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:41.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.699][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.700][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.701][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.702][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.712][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.716][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.727][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-19 16:04:41.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.745][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.754][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.764][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.768][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:04:41.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.797][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.798][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.807][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.811][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-19 16:04:41.822][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:41.823][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:41.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:41.835][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:41.838][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:41.839][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-19 16:04:41.840][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:41.841][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-19 16:04:41.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:41.905][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:41.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.926][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.926][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.936][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.940][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:04:41.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:41.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:41.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:41.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.968][private$selectFields]
biodb.TRACE[2025-04-19 16:04:41.969][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:41.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:41.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.977][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:41.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.981][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:41.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:41.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:41.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-19 16:04:41.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:41.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:41.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:41.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.010][private$selectFields]
biodb.TRACE[2025-04-19 16:04:42.011][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:42.011][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:42.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.020][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.024][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:42.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-19 16:04:42.042][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:42.043][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:42.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:42.057][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:42.059][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:42.060][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-19 16:04:42.061][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:42.062][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-19 16:04:42.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.123][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:42.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.141][private$selectFields]
biodb.TRACE[2025-04-19 16:04:42.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:42.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:42.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.151][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.155][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:42.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.166][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-19 16:04:42.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.185][private$selectFields]
biodb.TRACE[2025-04-19 16:04:42.185][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:42.186][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:42.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.191][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.198][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.210][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-19 16:04:42.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.229][private$selectFields]
biodb.TRACE[2025-04-19 16:04:42.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:42.230][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:42.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.240][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.244][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:42.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.255][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-19 16:04:42.256][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:42.256][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:42.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:42.294][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:42.297][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:42.298][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2025-04-19 16:04:42.299][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:42.300][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2025-04-19 16:04:42.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.464][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:42.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.482][private$selectFields]
biodb.TRACE[2025-04-19 16:04:42.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:42.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:42.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.492][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.496][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:42.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.506][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-19 16:04:42.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.523][private$selectFields]
biodb.TRACE[2025-04-19 16:04:42.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:42.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:42.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.533][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.537][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-19 16:04:42.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.566][private$selectFields]
biodb.TRACE[2025-04-19 16:04:42.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:42.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:42.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.577][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:42.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.580][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:42.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:42.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-19 16:04:42.591][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:42.592][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:42.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:42.605][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:42.607][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:42.609][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2025-04-19 16:04:42.610][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:42.611][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2025-04-19 16:04:42.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:42.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:42.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:42.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:42.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:42.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:42.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:42.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:42.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:42.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.235][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:43.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.267][private$selectFields]
biodb.TRACE[2025-04-19 16:04:43.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:43.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:43.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.277][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.281][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:43.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-19 16:04:43.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.310][private$selectFields]
biodb.TRACE[2025-04-19 16:04:43.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:43.311][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:43.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.321][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:43.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.335][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-19 16:04:43.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.353][private$selectFields]
biodb.TRACE[2025-04-19 16:04:43.354][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:43.354][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:43.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.363][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.367][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:43.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-19 16:04:43.378][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:43.379][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:43.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:43.392][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:43.394][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:43.395][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-19 16:04:43.397][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:43.398][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-19 16:04:43.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.479][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:43.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.497][private$selectFields]
biodb.TRACE[2025-04-19 16:04:43.498][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:43.499][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:43.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.507][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.512][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.523][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-19 16:04:43.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.550][private$selectFields]
biodb.TRACE[2025-04-19 16:04:43.551][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:43.552][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:43.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.564][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:43.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.575][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-19 16:04:43.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.592][private$selectFields]
biodb.TRACE[2025-04-19 16:04:43.592][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:43.593][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:43.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.601][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-19 16:04:43.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.605][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-19 16:04:43.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-19 16:04:43.616][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:43.617][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:04:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:43.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:43.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:43.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:43.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:43.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:04:43.648][biodb::testThat]
biodb.INFO [2025-04-19 16:04:43.649][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-04-19 16:04:43.650][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:04:43.651][biodb::testThat]
biodb.TRACE[2025-04-19 16:04:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:04:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:04:43.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.657][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:04:43.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:04:43.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.660][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:04:43.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:04:43.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:43.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:43.717][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:43.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-19 16:04:43.719][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:43.720][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-19 16:04:43.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.747][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:43.749][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:43.750][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-19 16:04:43.751][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:43.752][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-19 16:04:43.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:43.792][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:43.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:43.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:43.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:43.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:43.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:43.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:43.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:43.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:43.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.818][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:43.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:43.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:43.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:43.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:43.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:43.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:43.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:43.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:43.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:43.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:43.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.849][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:43.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.852][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:43.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:43.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:43.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:43.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:43.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:43.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:43.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:43.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:43.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.884][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:43.885][private$selectFields]
biodb.TRACE[2025-04-19 16:04:43.886][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:43.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:43.887][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:43.888][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:43.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:43.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.893][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:43.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:43.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.899][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:43.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:43.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:43.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:43.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:43.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:43.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.908][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:43.909][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:43.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.911][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.918][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:43.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:43.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.921][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:43.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:43.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:43.925][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:43.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.927][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:43.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:43.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.930][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:43.931][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:43.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.936][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:43.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:43.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:43.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:43.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:43.943][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:43.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.945][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:43.946][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:43.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.948][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.949][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.954][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:43.954][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:43.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.956][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:43.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:43.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.959][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:43.960][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:43.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.962][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:43.963][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:43.964][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:43.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:43.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.967][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:43.968][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:43.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:43.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.973][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:43.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:43.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.976][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:43.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:43.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:43.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:43.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.981][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:43.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.985][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:43.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.987][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:43.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:43.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.990][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:43.991][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:43.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.993][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:43.994][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:43.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:43.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:43.996][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:43.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:43.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:43.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.083][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.086][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.114][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-04-19 16:04:44.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:44.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:44.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:44.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:44.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:44.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:44.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.161][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.164][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.198][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:44.199][private$selectFields]
biodb.TRACE[2025-04-19 16:04:44.200][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:44.200][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:44.201][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:44.202][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.203][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.205][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.206][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.211][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.220][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.221][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.223][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.230][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.231][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.233][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.240][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.241][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.243][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.244][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.250][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.260][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.262][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.268][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.269][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.271][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.277][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:44.278][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:44.279][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.280][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.282][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.283][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.288][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.298][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.299][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.302][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.308][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.309][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.311][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.314][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.315][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.317][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:44.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.327][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.500][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.542][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-19 16:04:44.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:44.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:44.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:44.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:44.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:44.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:44.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:44.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.691][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:44.692][private$selectFields]
biodb.TRACE[2025-04-19 16:04:44.693][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:44.693][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:44.694][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:44.695][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.698][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.699][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.705][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.709][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.710][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.713][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.716][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.717][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.719][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.720][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.723][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.726][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.729][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.735][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.739][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.742][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.746][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.750][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.755][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.756][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:44.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.759][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.765][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.769][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.774][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.780][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:44.781][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:44.782][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.785][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.792][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.798][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.798][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.801][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.807][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.808][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.810][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.816][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:44.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.827][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:44.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:44.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:44.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:44.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:44.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:44.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:44.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.895][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.898][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:44.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:44.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-04-19 16:04:44.926][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:44.927][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:44.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:44.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:44.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:44.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:44.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:44.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:44.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:44.950][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:44.952][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:44.953][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-19 16:04:44.954][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:44.955][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-19 16:04:44.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:44.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:44.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:44.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:44.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:44.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:44.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:44.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:44.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:44.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:44.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:44.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:44.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:44.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:44.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:44.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:44.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:44.998][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:45.000][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:45.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-19 16:04:45.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:45.003][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-19 16:04:45.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:45.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:45.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:45.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:45.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:45.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:45.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:45.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:45.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:45.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:45.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:45.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:45.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:45.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:45.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:45.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:45.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:45.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:45.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:45.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:45.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:45.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:45.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:45.065][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:45.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:45.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:45.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:45.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:45.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:45.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:45.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.120][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.155][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.158][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:45.159][private$selectFields]
biodb.TRACE[2025-04-19 16:04:45.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:45.161][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:45.161][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:45.162][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.165][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.172][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.172][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.174][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.175][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.177][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.178][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.181][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.182][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.188][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.189][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.191][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.192][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.194][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.195][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.198][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.201][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.201][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.204][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.207][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.208][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.213][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.217][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.218][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.223][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.226][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.230][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.233][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.234][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.236][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.239][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.240][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.243][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:45.244][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:45.245][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.245][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.248][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.249][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.254][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.264][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.267][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.273][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.274][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.277][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.280][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.281][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.283][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:45.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.301][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.344][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.351][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.411][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:45.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:45.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:45.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:45.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:45.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:45.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:45.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:45.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.427][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.480][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.496][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:45.497][private$selectFields]
biodb.TRACE[2025-04-19 16:04:45.498][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:45.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:45.499][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:45.500][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.503][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.504][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.510][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.513][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.514][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.516][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.517][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.520][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.522][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.525][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.528][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.531][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.535][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.537][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.540][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.546][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.546][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.549][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.552][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.552][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.555][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.555][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.558][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.558][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.560][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.563][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.564][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.567][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.567][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.570][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.572][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:45.573][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:45.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.577][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.578][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.583][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.595][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.601][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.605][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.607][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.608][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.611][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:45.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.690][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.693][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.731][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:45.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:45.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:45.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:45.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:45.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:45.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:45.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:45.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.795][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.799][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.814][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.818][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.834][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:45.835][private$selectFields]
biodb.TRACE[2025-04-19 16:04:45.836][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:45.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:45.837][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:45.838][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.841][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.842][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.847][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.854][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.857][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.858][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.860][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.866][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.870][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.878][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.879][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.884][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.885][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.893][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.894][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:45.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.896][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.903][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.904][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.910][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.913][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.914][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.916][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:45.917][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:45.918][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.921][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:45.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:45.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.939][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:45.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.941][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:45.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.945][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:45.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:45.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.947][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:45.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:45.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.950][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:45.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:45.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:45.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:45.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:45.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:45.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.034][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:46.061][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:46.061][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:46.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:46.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:46.077][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:46.078][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-19 16:04:46.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:46.080][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-19 16:04:46.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:46.241][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:46.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-19 16:04:46.243][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:46.244][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-19 16:04:46.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:46.302][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:46.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.321][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.351][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.377][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.397][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:46.398][private$selectFields]
biodb.TRACE[2025-04-19 16:04:46.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:46.399][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:46.400][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:46.401][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.402][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.404][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.405][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.410][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.413][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.414][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.419][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.420][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.422][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.423][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.425][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.428][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.431][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.432][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.434][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.435][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.437][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.440][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.441][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.446][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.447][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.449][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.450][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.452][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.453][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.455][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.456][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.458][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.464][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.467][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.468][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.475][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.476][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.478][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:46.479][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:46.479][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.482][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.483][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.488][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.489][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.491][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.492][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.497][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.497][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.500][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.500][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.503][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.505][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.506][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.512][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.514][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:46.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.572][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.575][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.598][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-04-19 16:04:46.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.680][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.683][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.702][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.718][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:46.719][private$selectFields]
biodb.TRACE[2025-04-19 16:04:46.720][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:46.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:46.721][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:46.722][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.725][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.726][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.731][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.732][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.734][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.735][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.744][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.745][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.747][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.748][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.750][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.751][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.753][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.756][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.757][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.762][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.764][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.765][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.774][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.779][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.780][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.782][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.788][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.791][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.794][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.797][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:46.798][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:46.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.802][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.807][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.815][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.821][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.822][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.824][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.827][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.827][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.829][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:46.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:46.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:46.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:46.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:46.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-04-19 16:04:46.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:46.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:46.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:46.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:46.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:46.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:46.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:46.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:46.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:46.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:46.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:46.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:46.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.983][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:46.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:46.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:46.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:46.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.001][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.017][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:47.018][private$selectFields]
biodb.TRACE[2025-04-19 16:04:47.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:47.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:47.020][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:47.021][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.024][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.030][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.030][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.035][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.036][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.038][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.038][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.040][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.041][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.046][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.047][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.049][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.049][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.052][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.052][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.054][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.055][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.057][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.063][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.065][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.066][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.068][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.069][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.071][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.073][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.076][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.077][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.079][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.079][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.081][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.085][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.087][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:47.087][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:47.088][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.091][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.091][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.096][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.097][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.099][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.104][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.105][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.107][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.110][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.110][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.112][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.115][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.118][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:47.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.133][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-04-19 16:04:47.217][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:47.218][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:47.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:47.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:47.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:47.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:47.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:47.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:47.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:47.237][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:47.240][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:47.241][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-19 16:04:47.242][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:47.243][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-19 16:04:47.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:47.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:47.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:47.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:47.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:47.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:47.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:47.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:47.262][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:47.264][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:47.265][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-19 16:04:47.266][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:47.267][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-19 16:04:47.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:47.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:47.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:47.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:47.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:47.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:47.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:47.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:47.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:47.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:47.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:47.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:47.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:47.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:47.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:47.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:47.303][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:47.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:47.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:47.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:47.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:47.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:47.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:47.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:47.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.321][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.350][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.380][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.383][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.386][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:47.386][private$selectFields]
biodb.TRACE[2025-04-19 16:04:47.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:47.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:47.388][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:47.389][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.392][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.393][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.397][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.408][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.412][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.414][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.415][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.417][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.419][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.420][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.422][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.423][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.425][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.428][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.429][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.431][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.432][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.434][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.442][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.443][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.445][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.446][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.451][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.451][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.454][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.457][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.458][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.460][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.461][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.463][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:47.464][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:47.464][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.467][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.468][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.473][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.491][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.491][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.493][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.496][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.497][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.499][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:47.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.510][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-04-19 16:04:47.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:47.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:47.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:47.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:47.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:47.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:47.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:47.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.615][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.641][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.661][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.678][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.681][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:47.682][private$selectFields]
biodb.TRACE[2025-04-19 16:04:47.682][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:47.683][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:47.684][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:47.684][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.687][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.688][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.690][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.691][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.693][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.699][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.701][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.701][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.703][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.706][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.709][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.712][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.714][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.715][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.718][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.718][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.720][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.723][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.724][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.733][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.733][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.735][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.736][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.738][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.739][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.741][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.741][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.743][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.744][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.746][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.749][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.749][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.751][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.754][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.755][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.756][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.757][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:47.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.759][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:47.760][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:47.761][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.763][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.779][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.780][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.782][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.788][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.791][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.797][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.861][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:47.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:47.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-19 16:04:47.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:47.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:47.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:47.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:47.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:47.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:47.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:47.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:47.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:47.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:47.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:47.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:47.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:47.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:47.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:47.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:47.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:47.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:47.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.001][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.028][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:48.029][private$selectFields]
biodb.TRACE[2025-04-19 16:04:48.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:48.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:48.031][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:48.032][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.033][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.035][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.036][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.041][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.047][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.047][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.050][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.053][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.056][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.059][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.062][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.063][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.065][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.067][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.068][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.071][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.074][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.074][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.079][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.080][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.088][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.089][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.091][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.097][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.098][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.100][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.103][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.104][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.107][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.107][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.110][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:48.111][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:48.111][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.112][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.115][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.115][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.121][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.130][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.134][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.136][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.139][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.140][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.143][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.146][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:48.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.156][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.225][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.228][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-04-19 16:04:48.258][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:48.259][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:48.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:48.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:48.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:48.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:48.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:48.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:48.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:48.272][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:48.279][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:48.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-19 16:04:48.281][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:48.282][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-19 16:04:48.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:48.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:48.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:48.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:48.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:48.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:48.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:48.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:48.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:48.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:48.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:48.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:48.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:48.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:48.321][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:48.324][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:48.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-19 16:04:48.326][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:48.327][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-19 16:04:48.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:48.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:48.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:48.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:48.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:48.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:48.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:48.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:48.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:48.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:48.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:48.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:48.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:48.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:48.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:48.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:48.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:48.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:48.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:48.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:48.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:48.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:48.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:48.385][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:48.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:48.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:48.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:48.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:48.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:48.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:48.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:48.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.406][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.452][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.475][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.479][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:48.480][private$selectFields]
biodb.TRACE[2025-04-19 16:04:48.481][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:48.481][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:48.482][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:48.483][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.487][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.493][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.494][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.496][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.497][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.503][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.504][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.506][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.507][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.510][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.512][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.513][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.515][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.518][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.519][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.521][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.522][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.525][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.528][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.528][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.534][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.543][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.544][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.546][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.547][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.549][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.563][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.564][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.571][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.574][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.575][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.579][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.580][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.582][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:48.583][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:48.583][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.586][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.587][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.593][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.593][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.678][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.680][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.688][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.734][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.735][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.737][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.740][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.741][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.743][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.744][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.746][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.753][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.812][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.844][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.876][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:48.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:48.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:48.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:48.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:48.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:48.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:48.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:48.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.930][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:48.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:48.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:48.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.946][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:48.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:48.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:48.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:48.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.969][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.973][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:48.973][private$selectFields]
biodb.TRACE[2025-04-19 16:04:48.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:48.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:48.976][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:48.981][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:48.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:48.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.984][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:48.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:48.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:48.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.990][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:48.991][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:48.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:48.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:48.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:48.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:48.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:48.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.003][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.008][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.009][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.011][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.012][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.015][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.016][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.018][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.019][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.021][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.024][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.025][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.030][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.034][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.037][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.037][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.039][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.040][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.043][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.043][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.049][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.050][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.052][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.058][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.059][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.061][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:49.062][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:49.063][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.066][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.067][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.072][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.078][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.079][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.081][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.082][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.084][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.090][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.093][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.093][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.097][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.099][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:49.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.112][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.116][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.165][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.221][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:49.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.238][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.241][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.298][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.313][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.316][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.319][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:49.320][private$selectFields]
biodb.TRACE[2025-04-19 16:04:49.321][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:49.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:49.322][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:49.323][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.326][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.327][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.332][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.339][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.342][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.344][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.345][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.347][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.348][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.351][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.353][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.356][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.359][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.360][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.363][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.363][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.366][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.367][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.369][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.370][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.375][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.385][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.385][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.388][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.394][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.395][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.397][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.403][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.404][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.406][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:49.407][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:49.408][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.408][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.411][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.412][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.417][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.421][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.427][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.432][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.433][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.436][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.438][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.440][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.441][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.444][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:49.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.528][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.531][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:49.561][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:49.562][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:49.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:49.576][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:49.579][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:49.580][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-19 16:04:49.581][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:49.582][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-19 16:04:49.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.751][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:49.754][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:49.755][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-19 16:04:49.756][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:49.757][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-19 16:04:49.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:49.818][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:49.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:49.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:49.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:49.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:49.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:49.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:49.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:49.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.842][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.874][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.877][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.896][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.915][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.918][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:49.918][private$selectFields]
biodb.TRACE[2025-04-19 16:04:49.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:49.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:49.920][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:49.921][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.922][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.924][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.925][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.930][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.939][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.940][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.942][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.945][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.950][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.953][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.956][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.958][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.959][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:49.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:49.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.965][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:49.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:49.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:49.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.971][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:49.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:49.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:49.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:49.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:49.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.980][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.981][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:49.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.983][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.984][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:49.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.986][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.987][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:49.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.989][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.990][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:49.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.992][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:49.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:49.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:49.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:49.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:49.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:49.999][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:49.999][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.002][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:50.002][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:50.003][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.007][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.007][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.009][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.013][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.016][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.022][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.025][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.031][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.032][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.034][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.040][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:50.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.106][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-04-19 16:04:50.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:50.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:50.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:50.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:50.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:50.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:50.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:50.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.205][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.237][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.242][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:50.243][private$selectFields]
biodb.TRACE[2025-04-19 16:04:50.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:50.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:50.245][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:50.246][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.249][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.249][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.254][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.260][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.266][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.267][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.272][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.275][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.278][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.279][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.281][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.282][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.284][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.287][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.288][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.293][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.300][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.302][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.303][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.305][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.306][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.308][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.311][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.314][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.320][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.323][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.323][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.326][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:50.326][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:50.327][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.330][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.337][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.339][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.340][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.345][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.348][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.349][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.351][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.351][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.360][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.363][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.364][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.366][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.376][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.466][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-04-19 16:04:50.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:50.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:50.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:50.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:50.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:50.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:50.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:50.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.485][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.515][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.518][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.551][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.554][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.557][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:50.558][private$selectFields]
biodb.TRACE[2025-04-19 16:04:50.558][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:50.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:50.560][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:50.560][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.563][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.569][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.573][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.587][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.588][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.590][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.593][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.594][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.596][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.596][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.601][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.602][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.608][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.616][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.624][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.627][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.628][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.630][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.630][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.632][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.633][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.635][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.638][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.639][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:50.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.641][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:50.642][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:50.642][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.645][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.659][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.665][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.665][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.668][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.672][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.674][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.687][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.750][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.783][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-04-19 16:04:50.783][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:50.784][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:04:50.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:50.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:50.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:50.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:50.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:50.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:50.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:50.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:50.841][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:50.844][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:50.845][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-19 16:04:50.846][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:50.847][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-19 16:04:50.849][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:50.851][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:50.852][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-19 16:04:50.853][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:50.854][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-19 16:04:50.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:50.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:50.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:50.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:50.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:50.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:50.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:50.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:50.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:50.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:50.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:50.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:50.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:50.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:50.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:50.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:50.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:50.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:50.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:50.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:50.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:50.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:50.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:50.915][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:50.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:50.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:50.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:50.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:50.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:50.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:50.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:50.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:50.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:50.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:50.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:50.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:50.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:50.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:50.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.962][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:50.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.985][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:50.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:50.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:50.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:50.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:50.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:50.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.000][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:51.001][private$selectFields]
biodb.TRACE[2025-04-19 16:04:51.001][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:51.002][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:51.003][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:51.003][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.006][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.007][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.009][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.012][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.015][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.015][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.017][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.018][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.020][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.021][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.023][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.029][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.030][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.032][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.038][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.041][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.041][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.046][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.058][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.063][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.066][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.072][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:51.073][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:51.073][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.074][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.076][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.077][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.082][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.083][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.085][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.086][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.092][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.094][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.100][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.101][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.103][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.107][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.107][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.109][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:51.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.172][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.178][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.200][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-19 16:04:51.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:51.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:51.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:51.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:51.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:51.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:51.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.281][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.320][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:51.320][private$selectFields]
biodb.TRACE[2025-04-19 16:04:51.321][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:51.322][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:51.323][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:51.323][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.327][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.327][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.330][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.333][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.333][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.345][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.348][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.349][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.351][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.352][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.354][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.355][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.357][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.358][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.360][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.361][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.363][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.364][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.369][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.378][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.379][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.381][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.384][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.387][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.388][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.390][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.393][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.394][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.396][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:51.397][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:51.398][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.401][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.401][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.407][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.415][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.422][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.424][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.425][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.428][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.430][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.431][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.433][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.434][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.436][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.437][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.439][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.449][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.452][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.524][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.530][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-19 16:04:51.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:51.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:51.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:51.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:51.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:51.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:51.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:51.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.590][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.617][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.639][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.654][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:51.655][private$selectFields]
biodb.TRACE[2025-04-19 16:04:51.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:51.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:51.657][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:51.658][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.661][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.662][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.667][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.672][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.680][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.683][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.686][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.687][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.694][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.695][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.697][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.700][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.701][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.703][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.709][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.718][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.719][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:51.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.721][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.727][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.728][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.730][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.734][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.736][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:51.737][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:51.737][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.738][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.741][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.747][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.750][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.753][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.756][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.757][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.759][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.762][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.764][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.765][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.770][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:51.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:51.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:51.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:51.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.853][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:51.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:51.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:51.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:51.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.880][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-19 16:04:51.881][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:51.882][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:51.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:51.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:51.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:51.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:51.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:51.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:51.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:51.895][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:51.898][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:51.899][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-19 16:04:51.900][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:51.901][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-19 16:04:51.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:51.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:51.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:51.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:51.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:51.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:51.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:51.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:51.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:51.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:51.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:51.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:51.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:51.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:51.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:51.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:51.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:51.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:51.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:51.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:51.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:51.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:51.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:51.963][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:51.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:51.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:51.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:51.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:51.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:51.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:51.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:51.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:51.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:51.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:51.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.018][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.022][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.038][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.041][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.058][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:52.058][private$selectFields]
biodb.TRACE[2025-04-19 16:04:52.059][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:52.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:52.061][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:52.061][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.064][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.065][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.071][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.077][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.080][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.081][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.083][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.087][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.090][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.093][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.097][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.099][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.102][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.103][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.109][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.112][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.113][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.115][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.118][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.122][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.125][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.126][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.128][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.129][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.131][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.132][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.137][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:52.138][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:52.139][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.142][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.143][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.159][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.161][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.162][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.164][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.165][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.167][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.168][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.171][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.178][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:52.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.255][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.282][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:52.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:52.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:52.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:52.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:52.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:52.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:52.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:52.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.336][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.364][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.367][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.409][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:52.410][private$selectFields]
biodb.TRACE[2025-04-19 16:04:52.411][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:52.412][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:52.413][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:52.414][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.415][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.417][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.418][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.424][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.428][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.449][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.456][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.457][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.462][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.463][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.465][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.466][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.468][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.471][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.472][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.478][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.491][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.497][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.498][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.500][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.501][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.507][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:52.507][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:52.508][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.511][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.512][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.518][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.527][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.528][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.530][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.533][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.534][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.536][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.539][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.540][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.543][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:52.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.624][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.630][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.656][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:52.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:52.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:52.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:52.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:52.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:52.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:52.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.710][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.729][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.745][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:52.745][private$selectFields]
biodb.TRACE[2025-04-19 16:04:52.746][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:52.747][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:52.748][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:52.749][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.752][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.752][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.758][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.765][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.768][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.770][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.774][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.777][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.778][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.780][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.781][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.784][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.785][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.787][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.790][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.791][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.797][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:52.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.812][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.813][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.818][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.819][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.821][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.830][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.833][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:52.833][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:52.834][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.837][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.838][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.844][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.847][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.853][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.859][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.860][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.862][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.866][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.868][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:52.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:52.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:52.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.885][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:52.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:52.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:52.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:52.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:52.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.952][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:52.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:52.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:52.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:52.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:52.983][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-04-19 16:04:52.983][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:52.984][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:52.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:52.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:52.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:52.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:52.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:52.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:52.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:52.998][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:53.001][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:53.002][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-19 16:04:53.003][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:53.004][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-19 16:04:53.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:53.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:53.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:53.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:53.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:53.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:53.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:53.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:53.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:53.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:53.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:53.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:53.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:53.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:53.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:53.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:53.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:53.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:53.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:53.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:53.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:53.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:53.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:53.062][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:53.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:53.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:53.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:53.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:53.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:53.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:53.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:53.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.078][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.081][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.121][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.136][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.155][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:53.155][private$selectFields]
biodb.TRACE[2025-04-19 16:04:53.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:53.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:53.157][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:53.158][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.162][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.162][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.168][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.174][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.175][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.177][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.180][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.183][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.184][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.186][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.189][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.192][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.193][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.195][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.198][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.209][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.210][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.215][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.216][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.218][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.224][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.227][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.231][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.231][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.234][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:53.235][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:53.235][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.239][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.239][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.256][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.268][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.269][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.276][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.277][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.279][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.282][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.285][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:53.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.349][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.352][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.379][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-04-19 16:04:53.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:53.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:53.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:53.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:53.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:53.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:53.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:53.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.429][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.461][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.478][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.493][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:53.493][private$selectFields]
biodb.TRACE[2025-04-19 16:04:53.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:53.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:53.496][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:53.496][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.500][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.500][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.508][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.509][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.511][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.512][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.514][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.517][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.520][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.523][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.526][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.526][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.528][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.529][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.531][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.532][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.534][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.537][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.537][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.542][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.551][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.551][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.553][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.559][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.562][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.564][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.565][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.567][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:53.568][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:53.569][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.572][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.578][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.583][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.584][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.586][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.592][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.593][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.595][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.598][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.598][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.600][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.614][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.674][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-04-19 16:04:53.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:53.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:53.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:53.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:53.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:53.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:53.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.719][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.754][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.772][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.788][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:53.789][private$selectFields]
biodb.TRACE[2025-04-19 16:04:53.789][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:53.790][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:53.791][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:53.792][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.794][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.800][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.803][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.811][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.812][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.814][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.817][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.818][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.820][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.821][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.826][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.829][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.830][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.835][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.838][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:53.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.846][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.851][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.852][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.854][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.855][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.857][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.858][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.860][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:53.860][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:53.861][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.864][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.864][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.873][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.878][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.884][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.886][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.892][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:53.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:53.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:53.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:53.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:53.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:53.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:53.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:53.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:53.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:53.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:53.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:53.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:53.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:53.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:53.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:53.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:53.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:53.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:53.995][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:53.995][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:54.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:54.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:54.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:54.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:54.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:54.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:54.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:54.011][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:54.013][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:54.014][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-19 16:04:54.015][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:54.016][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-19 16:04:54.018][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:54.020][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:54.022][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-19 16:04:54.023][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:54.024][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-19 16:04:54.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:54.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:54.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:54.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:54.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:54.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:54.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:54.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:54.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:54.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:54.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:54.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:54.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:54.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:54.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:54.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:54.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:54.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:54.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:54.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:54.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:54.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:54.078][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:54.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:54.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:54.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:54.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:54.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:54.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:54.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:54.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.094][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.125][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.148][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.171][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.174][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:54.175][private$selectFields]
biodb.TRACE[2025-04-19 16:04:54.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:54.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:54.177][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:54.178][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.179][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.182][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.188][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.191][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.192][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.197][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.207][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.207][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.210][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.216][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.216][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.219][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.220][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.222][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.222][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.228][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.237][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.238][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.240][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.241][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.246][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.247][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.249][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.249][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.252][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.252][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.254][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.255][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.257][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:54.258][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:54.259][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.261][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.267][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.271][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.273][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.279][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.284][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.287][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.293][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:54.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.308][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.351][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.354][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-19 16:04:54.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:54.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:54.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:54.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:54.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:54.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:54.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:54.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.439][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.470][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.506][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.509][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.513][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:54.514][private$selectFields]
biodb.TRACE[2025-04-19 16:04:54.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:54.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:54.516][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:54.517][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.520][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.521][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.527][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.537][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.541][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.541][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.545][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.546][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.548][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.551][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.555][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.556][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.558][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.559][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.562][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.565][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.581][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.582][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.585][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.586][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.592][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.593][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.595][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.598][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.599][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.602][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.602][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.605][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:54.606][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:54.606][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.610][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.616][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.626][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.626][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.632][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.633][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.635][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.636][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.638][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.639][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.645][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:54.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.715][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.747][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-19 16:04:54.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:54.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:54.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:54.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:54.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:54.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:54.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:54.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.825][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.871][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:54.872][private$selectFields]
biodb.TRACE[2025-04-19 16:04:54.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:54.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:54.875][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:54.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.879][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.886][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.896][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.897][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.900][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.919][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.920][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.922][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.926][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.928][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.930][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.935][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.938][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.939][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.944][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:54.949][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:54.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:54.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.954][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:54.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.958][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:54.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:54.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.964][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:54.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.968][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:54.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:54.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:54.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:54.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.975][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.976][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:54.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.978][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:54.979][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:54.980][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:54.981][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:54.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.984][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:54.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:54.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:54.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:54.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:54.991][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:54.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:54.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.008][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.011][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.015][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.026][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:55.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-19 16:04:55.141][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:55.142][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:55.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:55.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:55.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:55.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:55.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:55.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:55.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:55.155][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:55.157][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:55.159][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-19 16:04:55.160][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:55.161][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-19 16:04:55.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:55.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:55.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:55.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:55.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:55.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:55.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:55.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:55.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:55.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:55.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:55.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:55.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:55.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:55.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:55.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:55.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:55.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:55.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:55.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:55.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:55.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:55.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:55.224][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:55.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:55.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:55.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:55.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:55.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:55.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:55.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:55.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.245][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.321][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.328][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:55.329][private$selectFields]
biodb.TRACE[2025-04-19 16:04:55.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:55.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:55.331][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:55.332][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.333][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.335][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.341][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.350][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.351][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.354][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.359][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.360][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.362][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.368][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.369][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.371][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.374][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.375][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.381][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.385][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.387][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.390][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.391][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.393][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.394][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.399][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.400][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.402][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.405][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.406][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.408][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.409][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.411][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:55.412][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:55.412][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.416][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.416][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.421][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.425][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.425][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.439][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.440][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.442][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.443][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.445][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.446][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.448][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:55.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.505][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.512][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.538][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.573][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:55.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:55.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:55.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:55.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:55.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:55.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:55.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:55.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.621][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.624][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.641][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.644][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.659][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.666][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:55.666][private$selectFields]
biodb.TRACE[2025-04-19 16:04:55.667][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:55.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:55.669][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:55.670][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.670][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.672][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.673][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.679][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.689][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.690][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.692][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.693][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.711][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.714][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.715][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.717][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.717][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.720][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.720][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.725][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.725][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.731][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.732][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.737][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.750][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.753][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.756][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.759][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.760][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.762][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.763][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.765][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.766][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:55.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.768][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:55.769][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:55.769][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.773][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.773][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.779][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.780][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.788][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.789][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.794][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.797][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.800][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.801][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.804][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:55.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:55.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:55.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:55.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:55.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:55.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:55.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:55.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:55.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:55.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:55.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:55.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:55.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.939][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:55.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:55.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:55.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:55.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:55.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:55.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:55.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:55.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:55.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:55.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:55.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:55.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:55.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:55.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.014][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:56.015][private$selectFields]
biodb.TRACE[2025-04-19 16:04:56.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:56.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:56.018][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:56.018][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.022][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.022][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.028][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.032][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.034][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.037][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.038][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.040][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.041][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.046][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.047][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.049][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.052][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.053][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.055][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.055][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.058][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.061][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.061][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.067][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.074][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.075][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.077][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.078][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.080][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.087][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.087][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.090][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.094][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.096][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.097][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.099][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:56.100][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:56.101][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.104][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.105][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.132][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.133][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.139][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.139][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.145][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.145][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.148][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.151][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.152][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.154][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.165][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.239][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-04-19 16:04:56.266][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:56.267][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:04:56.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:56.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:56.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:56.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:56.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:56.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:56.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:04:56.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-19 16:04:56.284][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:04:56.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-19 16:04:56.287][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:04:56.288][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-19 16:04:56.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:56.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:56.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:56.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:56.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:56.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:56.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:56.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:56.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:56.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:56.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:56.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:56.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:56.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:56.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:56.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:56.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:56.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:56.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:56.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:56.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:56.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:56.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:04:56.349][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:04:56.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:56.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:56.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:56.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:56.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:56.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:56.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.367][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.402][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.427][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.450][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:56.450][private$selectFields]
biodb.TRACE[2025-04-19 16:04:56.451][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:56.452][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:56.453][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:56.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.467][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.469][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.474][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.474][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.486][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.490][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.496][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.497][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.506][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.506][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.509][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.512][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.518][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.528][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.529][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.531][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.537][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.540][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.541][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.543][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.544][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.546][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.547][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.549][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:56.550][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:56.551][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.554][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.554][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.560][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.572][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.579][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.580][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.582][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.587][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.589][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:56.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.603][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.649][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.652][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.678][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.716][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-04-19 16:04:56.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:56.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:56.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:56.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:56.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:56.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:56.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.734][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.761][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.764][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.797][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.800][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.803][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:56.803][private$selectFields]
biodb.TRACE[2025-04-19 16:04:56.804][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:56.805][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:56.805][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:56.806][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.809][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.810][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.815][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.821][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.824][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.824][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.826][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.829][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.830][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.832][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.835][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.838][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.839][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.841][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.842][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.844][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.847][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.847][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.853][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.862][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.863][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:56.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.869][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.872][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.875][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.878][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.879][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.881][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.882][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:56.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.884][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:56.885][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:56.886][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.889][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.889][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.904][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.907][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.910][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.911][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.913][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:56.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:56.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.917][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:56.917][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:56.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.920][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:56.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.930][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.933][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.936][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:56.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:56.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:56.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:56.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:56.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:56.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:56.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:56.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:56.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:56.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:56.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:56.998][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:56.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.001][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-04-19 16:04:57.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:04:57.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:57.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:57.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:57.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:57.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:57.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:04:57.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:57.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:57.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:57.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:57.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:57.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:57.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:57.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:57.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:57.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:57.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.076][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:57.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:57.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.093][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:57.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:57.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:57.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:57.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.114][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:57.115][private$selectFields]
biodb.TRACE[2025-04-19 16:04:57.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:04:57.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:04:57.117][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-19 16:04:57.118][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:57.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:57.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.121][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:57.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:57.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.126][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:57.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:57.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:57.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:57.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.133][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.135][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:57.136][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:57.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.138][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.139][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.141][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.143][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.144][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.146][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.149][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.150][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.152][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:57.153][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:57.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.155][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:57.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:57.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.158][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:57.158][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:57.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.163][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:57.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:57.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:57.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:57.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.172][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:57.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-19 16:04:57.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.175][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.181][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.184][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.188][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.191][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:04:57.192][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:04:57.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.193][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.194][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:57.195][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-19 16:04:57.196][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:57.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:57.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.199][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:57.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:57.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.207][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.210][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:57.210][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:57.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:57.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:57.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.215][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.225][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.228][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.231][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.232][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.234][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-19 16:04:57.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:57.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:57.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:57.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:57.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:04:57.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:04:57.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:57.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-19 16:04:57.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-19 16:04:57.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-19 16:04:57.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:57.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:57.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:57.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:57.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:04:57.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:04:57.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:57.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:57.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:57.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:57.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:04:57.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:04:57.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:04:57.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:04:57.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:04:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.310][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-19 16:04:57.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:04:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:04:57.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-19 16:04:57.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-19 16:04:57.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-04-19 16:04:57.339][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:04:57.339][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:04:57.344][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:57.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:57.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.348][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:57.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:57.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:04:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:57.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:04:57.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:04:57.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:04:57.356][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-19 16:04:57.357][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-04-19 16:04:57.358][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-04-19 16:04:57.358][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-19 16:04:57.359][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:04:57.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:04:57.360][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:04:57.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:04:57.361][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:04:57.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1392 ]
> 
> proc.time()
   user  system elapsed 
 57.170   2.981 169.557

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.0 RC (2025-04-04 r88126)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.14.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)