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This page was generated on 2024-12-23 12:04 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2269/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
wppi 1.14.0  (landing page)
Ana Galhoz
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/wppi
git_branch: RELEASE_3_20
git_last_commit: 240f65a
git_last_commit_date: 2024-10-29 10:58:10 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


INSTALL results for wppi on nebbiolo2

To the developers/maintainers of the wppi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wppi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: wppi
Version: 1.14.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL wppi
StartedAt: 2024-12-19 15:33:02 -0500 (Thu, 19 Dec 2024)
EndedAt: 2024-12-19 15:33:14 -0500 (Thu, 19 Dec 2024)
EllapsedTime: 11.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL wppi
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘wppi’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:05] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:05] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:05] [TRACE]   [OmnipathR] Cache locked: FALSE
Note: wrong number of arguments to '/' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:09] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:09] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:09] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:12] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Contains 1 files.
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:12] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.20-bioc/R/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-12-19 15:33:12] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (wppi)