Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:07 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2266/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
widgetTools 1.84.0 (landing page) Jianhua Zhang
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the widgetTools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/widgetTools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: widgetTools |
Version: 1.84.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:widgetTools.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings widgetTools_1.84.0.tar.gz |
StartedAt: 2024-12-20 11:23:29 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 11:24:18 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 48.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: widgetTools.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:widgetTools.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings widgetTools_1.84.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/widgetTools.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘widgetTools/DESCRIPTION’ ... OK * this is package ‘widgetTools’ version ‘1.84.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘widgetTools’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘methods’ which was already attached by Depends. Please remove these calls from your code. 'library' or 'require' call to ‘Biobase’ in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. Package in Depends field not imported from: ‘tcltk’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File ‘widgetTools/R/zzz.R’: .onLoad has wrong argument list ‘libname, pkgname, where’ .onLoad calls: require("methods", quietly = TRUE) .onAttach calls: require("Biobase") Package startup functions should have two arguments with names starting with ‘lib’ and ‘pkg’, respectively. Package startup functions should not change the search path. See section ‘Good practice’ in '?.onAttach'. .getChanges: warning in get(wName(pWidgets[[i]]), env = wEnv(pWidgets[[i]])): partial argument match of 'env' to 'envir' .putPW2Env : putOne: warning in assign(wName(pWidget), pWidget, env = wEnv(pWidget)): partial argument match of 'env' to 'envir' updateCheck,widget: warning in get(PWName, env = wEnv(object)): partial argument match of 'env' to 'envir' updateCheck,widget: warning in assign(wName(tempPW), tempPW, env = wEnv(tempPW)): partial argument match of 'env' to 'envir' updateList,widget: warning in get(PWName, env = wEnv(object)): partial argument match of 'env' to 'envir' updateList,widget: warning in assign(wName(tempPW), tempPW, env = wEnv(tempPW)): partial argument match of 'env' to 'envir' updateRadio,widget: warning in get(PWName, env = wEnv(object)): partial argument match of 'env' to 'envir' updateRadio,widget: warning in assign(wName(tempPW), tempPW, env = wEnv(tempPW)): partial argument match of 'env' to 'envir' updateText,widget: warning in get(PWName, env = wEnv(object)): partial argument match of 'env' to 'envir' updateText,widget: warning in assign(wName(tempPW), tempPW, env = wEnv(tempPW)): partial argument match of 'env' to 'envir' .doList: no visible global function definition for ‘tklistbox’ .doText: no visible global function definition for ‘tktext’ .doText: no visible global function definition for ‘tkinsert’ .doWidgets : doOne: no visible global function definition for ‘tkframe’ .doWidgets : doOne: no visible global function definition for ‘tclVar’ .doWidgets : doOne: no visible global function definition for ‘tkconfigure’ .doWidgets : doOne: no visible global function definition for ‘tkpack’ .doWidgets : doOne : <anonymous>: no visible global function definition for ‘tkfocus’ .doWidgets : doOne: no visible global function definition for ‘tkbind’ .doWidgets : doRow: no visible global function definition for ‘tkframe’ .doWidgets : doRow: no visible global function definition for ‘tkpack’ .getViewer: no visible global function definition for ‘tkcanvas’ .getViewer: no visible global function definition for ‘tkconfigure’ .onAttach: no visible global function definition for ‘addVigs2WinMenu’ .renderButton: no visible global function definition for ‘tkbutton’ .renderButton : <anonymous>: no visible global function definition for ‘tkfocus’ .renderButton: no visible global function definition for ‘tkconfigure’ .renderCheck: no visible global function definition for ‘tkcheckbutton’ .renderCheck: no visible global function definition for ‘tkselect’ .renderEntry: no visible global function definition for ‘tkentry’ .renderLabel: no visible global function definition for ‘tklabel’ .renderRadio: no visible global function definition for ‘tkradiobutton’ .renderViewer: no visible global function definition for ‘tkframe’ .renderViewer: no visible global function definition for ‘tkconfigure’ .renderViewer: no visible global function definition for ‘tkpack’ .renew : renewOne: no visible global function definition for ‘tkselect’ .renew : renewOne: no visible global function definition for ‘tkdeselect’ dropdownList : upDateEntry: no visible global function definition for ‘tkconfigure’ dropdownList: no visible global function definition for ‘tkmessageBox’ dropdownList: no visible global function definition for ‘tclvalue<-’ dropdownList: no visible global function definition for ‘tkframe’ dropdownList: no visible global function definition for ‘tkentry’ dropdownList: no visible global function definition for ‘tkconfigure’ dropdownList: no visible global function definition for ‘tkpack’ dropdownList: no visible global function definition for ‘tkbutton’ getEntryValue: no visible global function definition for ‘tclvalue’ getEntryValue: no visible global function definition for ‘tkget’ getListOption : end: no visible global function definition for ‘tclObj’ getListOption : end: no visible global function definition for ‘tkcurselection’ getListOption : end: no visible global function definition for ‘tkgrab.release’ getListOption : end: no visible global function definition for ‘tkdestroy’ getListOption: no visible global function definition for ‘tclVar’ getListOption: no visible global function definition for ‘tclObj<-’ getListOption: no visible global function definition for ‘tkwinfo’ getListOption: no visible global function definition for ‘tkwm.overrideredirect’ getListOption: no visible global function definition for ‘tktoplevel’ getListOption: no visible global function definition for ‘tkdestroy’ getListOption: no visible global function definition for ‘tkwm.geometry’ getListOption: no visible global function definition for ‘tklistbox’ getListOption: no visible global function definition for ‘tkscrollbar’ getListOption : <anonymous>: no visible global function definition for ‘tkyview’ getListOption: no visible global function definition for ‘tkconfigure’ getListOption : <anonymous>: no visible global function definition for ‘tkset’ getListOption: no visible global function definition for ‘tkpack’ getListOption: no visible global function definition for ‘tkbind’ getListOption: no visible global function definition for ‘tkgrab.set’ getListOption: no visible global function definition for ‘tkwait.window’ getListValue: no visible global function definition for ‘tkcurselection’ getListValue: no visible global function definition for ‘tkget’ getTextValue: no visible global function definition for ‘tclvalue’ getTextValue: no visible global function definition for ‘tkget’ makeViewer: no visible global function definition for ‘tkscrollbar’ makeViewer : <anonymous>: no visible global function definition for ‘tkyview’ makeViewer: no visible global function definition for ‘tkconfigure’ makeViewer : <anonymous>: no visible global function definition for ‘tkset’ makeViewer: no visible global function definition for ‘tkpack’ makeViewer : <anonymous>: no visible global function definition for ‘tkxview’ oneVScrList: no visible global function definition for ‘tkframe’ oneVScrList: no visible global function definition for ‘tkpack’ oneVScrList: no visible global function definition for ‘tkbutton’ oneVScrList: no visible global function definition for ‘tklistbox’ oneVScrList : bindYView: no visible global function definition for ‘tkyview’ oneVScrList: no visible global function definition for ‘tkscrollbar’ oneVScrList: no visible global function definition for ‘tkconfigure’ oneVScrList : <anonymous>: no visible global function definition for ‘tkset’ tooltip : end: no visible global function definition for ‘tkdestroy’ tooltip: no visible global function definition for ‘tkwinfo’ tooltip: no visible global function definition for ‘tkwm.overrideredirect’ tooltip: no visible global function definition for ‘tktoplevel’ tooltip: no visible global function definition for ‘tkdestroy’ tooltip: no visible global function definition for ‘tkwm.geometry’ tooltip: no visible global function definition for ‘tklabel’ tooltip: no visible global function definition for ‘tkpack’ tooltip: no visible global function definition for ‘tkbind’ tooltip: no visible global function definition for ‘tkwait.window’ widget: no visible global function definition for ‘tkgrab.set’ widget : cancelBut: no visible global function definition for ‘tkgrab.release’ widget: no visible global function definition for ‘tcl’ widgetView: no visible global function definition for ‘tktoplevel’ widgetView: no visible global function definition for ‘tktitle<-’ writeList: no visible global function definition for ‘capture.output’ writeList: no visible global function definition for ‘tkdelete’ writeList: no visible binding for global variable ‘tkinsert’ writeText: no visible global function definition for ‘capture.output’ writeText: no visible global function definition for ‘tkdelete’ writeText: no visible global function definition for ‘tkinsert’ killWin,widgetView: no visible global function definition for ‘tkdestroy’ updateList,widget: no visible binding for global variable ‘bName’ winWait,widgetView: no visible global function definition for ‘tkwait.window’ Undefined global functions or variables: addVigs2WinMenu bName capture.output tcl tclObj tclObj<- tclVar tclvalue tclvalue<- tkbind tkbutton tkcanvas tkcheckbutton tkconfigure tkcurselection tkdelete tkdeselect tkdestroy tkentry tkfocus tkframe tkget tkgrab.release tkgrab.set tkinsert tklabel tklistbox tkmessageBox tkpack tkradiobutton tkscrollbar tkselect tkset tktext tktitle<- tktoplevel tkwait.window tkwinfo tkwm.geometry tkwm.overrideredirect tkxview tkyview Consider adding importFrom("utils", "capture.output") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/widgetTools.Rcheck/00check.log’ for details.
widgetTools.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL widgetTools ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘widgetTools’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (widgetTools)
widgetTools.Rcheck/widgetTools-Ex.timings
name | user | system | elapsed | |
basicPW-class | 0.016 | 0.002 | 0.019 | |
button | 0.012 | 0.003 | 0.015 | |
dropdownList | 0 | 0 | 0 | |
makeViewer | 0.000 | 0.000 | 0.001 | |
oneVScrList | 0.000 | 0.001 | 0.000 | |
safeFileOpen | 0.002 | 0.002 | 0.003 | |
tooltip | 0.000 | 0.000 | 0.001 | |
widget-class | 0.012 | 0.003 | 0.016 | |
widgetView-class | 0.000 | 0.001 | 0.001 | |
writeText | 0.001 | 0.000 | 0.001 | |