Multiple platform build/check report for BioC 3.21 - BUILD results for variancePartition on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4823
palomino7	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4565
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4603
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4544
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for variancePartition on palomino7

To the developers/maintainers of the variancePartition package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/variancePartition.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: variancePartition

Version: 1.38.0

Command: chmod a+r variancePartition -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data variancePartition

StartedAt: 2025-07-31 22:59:40 -0400 (Thu, 31 Jul 2025)

EndedAt: 2025-07-31 23:09:03 -0400 (Thu, 31 Jul 2025)

EllapsedTime: 562.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r variancePartition -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data variancePartition
###
##############################################################################
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* checking for file 'variancePartition/DESCRIPTION' ... OK
* preparing 'variancePartition':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: variancePartition
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building 'FAQ.Rmd' using rmarkdown
--- finished re-building 'FAQ.Rmd'

--- re-building 'additional_visualization.Rmd' using rmarkdown
--- finished re-building 'additional_visualization.Rmd'

--- re-building 'dream.Rmd' using rmarkdown

Quitting from dream.Rmd:113-133 [dupCor]
Error: processing vignette 'dream.Rmd' failed with diagnostics:
evaluation nested too deeply: infinite recursion / options(expressions=)?
--- failed re-building 'dream.Rmd'

--- re-building 'errors.Rmd' using rmarkdown
--- finished re-building 'errors.Rmd'

--- re-building 'mvtests.Rmd' using rmarkdown

Quitting from mvtests.Rmd:78-95 [dream]
Error: processing vignette 'mvtests.Rmd' failed with diagnostics:
evaluation nested too deeply: infinite recursion / options(expressions=)?
--- failed re-building 'mvtests.Rmd'

--- re-building 'rnd_effects.Rmd' using rmarkdown
--- finished re-building 'rnd_effects.Rmd'

--- re-building 'variancePartition.Rmd' using rmarkdown
--- finished re-building 'variancePartition.Rmd'

SUMMARY: processing the following files failed:
  'dream.Rmd' 'mvtests.Rmd'

Error: Vignette re-building failed.
Execution halted