Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:04 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2197/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
trigger 1.52.0 (landing page) John D. Storey
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the trigger package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trigger.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: trigger |
Version: 1.52.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:trigger.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings trigger_1.52.0.tar.gz |
StartedAt: 2024-12-20 06:20:33 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 06:25:01 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 268.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: trigger.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:trigger.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings trigger_1.52.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/trigger.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘trigger/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘trigger’ version ‘1.52.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘trigger’ can be installed ... OK * used C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE initialize,trigger: no visible global function definition for ‘callNextMethod’ Undefined global functions or variables: callNextMethod Consider adding importFrom("methods", "callNextMethod") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed trigger-export2cross 23.862 0.587 24.451 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.20-bioc/meat/trigger.Rcheck/00check.log’ for details.
trigger.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL trigger ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘trigger’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c trigger.c -o trigger.o trigger.c: In function ‘mergeorder’: trigger.c:25:20: warning: variable ‘n3’ set but not used [-Wunused-but-set-variable] 25 | int i1,i2,i3,n1,n2,n3; | ^~ trigger.c: In function ‘sec_link_stat’: trigger.c:81:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable] 81 | int ntr, nct, i, j; | ^~~ trigger.c: In function ‘sec_link_stat_x’: trigger.c:153:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable] 153 | int ntr, nct, i, j, k, nk; | ^~~ trigger.c: In function ‘condi_indep_stat’: trigger.c:233:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable] 233 | int ntr, nct, i, j; | ^~~ trigger.c: In function ‘condi_indep_stat_x’: trigger.c:310:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable] 310 | int ntr, nct, i, j, k, nk; | ^~~ trigger.c: In function ‘condi_indep_stat_rx’: trigger.c:393:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable] 393 | int ntr, nct, i, j, k, nk; | ^~~ gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o trigger.so trigger.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-trigger/00new/trigger/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (trigger)
trigger.Rcheck/trigger-Ex.timings
name | user | system | elapsed | |
plot | 0.001 | 0.001 | 0.000 | |
trigger-build | 0.000 | 0.000 | 0.001 | |
trigger-eigenR2 | 0 | 0 | 0 | |
trigger-export2cross | 23.862 | 0.587 | 24.451 | |
trigger-link | 0 | 0 | 0 | |
trigger-loclink | 0 | 0 | 0 | |
trigger-mlink | 0 | 0 | 0 | |
trigger-net | 0 | 0 | 0 | |
trigger-netPlot2ps | 0 | 0 | 0 | |
trigger-trait | 0 | 0 | 0 | |