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This page was generated on 2025-07-24 11:46 -0400 (Thu, 24 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4821
palomino7Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4563
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4601
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4542
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4578
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2187/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidyFlowCore 1.2.0  (landing page)
Timothy Keyes
Snapshot Date: 2025-07-21 13:40 -0400 (Mon, 21 Jul 2025)
git_url: https://git.bioconductor.org/packages/tidyFlowCore
git_branch: RELEASE_3_21
git_last_commit: bcddee6
git_last_commit_date: 2025-04-15 13:36:05 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    NA  


CHECK results for tidyFlowCore on merida1

To the developers/maintainers of the tidyFlowCore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidyFlowCore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: tidyFlowCore
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:tidyFlowCore.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings tidyFlowCore_1.2.0.tar.gz
StartedAt: 2025-07-22 12:14:22 -0400 (Tue, 22 Jul 2025)
EndedAt: 2025-07-22 12:17:56 -0400 (Tue, 22 Jul 2025)
EllapsedTime: 214.1 seconds
RetCode: 0
Status:   OK  
CheckDir: tidyFlowCore.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:tidyFlowCore.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings tidyFlowCore_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/tidyFlowCore.Rcheck’
* using R version 4.5.1 RC (2025-06-05 r88288)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tidyFlowCore/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tidyFlowCore’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tidyFlowCore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

tidyFlowCore.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL tidyFlowCore
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘tidyFlowCore’ ...
** this is package ‘tidyFlowCore’ version ‘1.2.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyFlowCore)

Tests output

tidyFlowCore.Rcheck/tests/testthat.Rout


R version 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(tidyFlowCore)
> 
> test_check("tidyFlowCore")

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'tidyr'

The following object is masked from 'package:testthat':

    matches

[ FAIL 0 | WARN 0 | SKIP 0 | PASS 104 ]
> 
> proc.time()
   user  system elapsed 
 26.958   1.025  28.273 

Example timings

tidyFlowCore.Rcheck/tidyFlowCore-Ex.timings

nameusersystemelapsed
arrange.flowFrame0.5330.0180.553
arrange.flowSet0.8480.0170.871
as_flowFrame0.0000.0000.001
as_flowSet0.0000.0010.000
as_tof_tbl0.0510.0030.055
count.flowFrame0.6440.0210.700
count.flowSet0.3840.0120.402
filter.flowFrame0.3440.0100.358
filter.flowSet0.8260.0170.854
ggplot.flowFrame0.2580.0100.270
ggplot.flowSet0.3000.0100.313
group_by.flowFrame0.8030.0220.840
make_flowcore_annotated_data_frame000
mutate.flowFrame0.7370.0200.761
mutate.flowSet0.8690.0180.962
nest.flowFrame0.8060.0210.835
pull.flowFrame0.2350.0100.247
pull.flowSet0.2390.0180.258
reexports0.0000.0010.000
rename.flowFrame0.3460.0090.393
rename.flowSet0.8430.0170.863
rename_with.flowFrame0.3460.0110.357
rename_with.flowSet0.8410.0190.971
select.flowFrame0.3290.0100.367
select.flowSet0.7320.0140.789
simulate_cytometry_data0.2360.0090.247
slice.flowFrame0.3550.0110.368
slice.flowSet0.8890.0180.932
slice_head.flowFrame0.3420.0100.354
slice_head.flowSet0.8520.0170.877
slice_max.flowFrame0.3410.0110.353
slice_max.flowSet0.8590.0180.878
slice_min.flowFrame0.3390.0090.349
slice_min.flowSet0.8230.0140.839
slice_sample.flowFrame0.3260.0090.407
slice_sample.flowSet0.8410.0150.858
slice_tail.flowFrame0.3330.0090.344
slice_tail.flowSet0.8170.0150.875
summarise.flowFrame0.2420.0080.252
summarise.flowSet0.3640.0080.414
summarize.flowFrame0.4450.0110.459
summarize.flowSet0.3550.0280.385
tof_get_panel0.0000.0010.001
tof_set_panel0.0000.0000.001
transmute.flowFrame0.3290.0390.368
transmute.flowSet0.7430.0150.761
ungroup.flowSet0.4080.0120.421
unnest.flowSet0.7320.0150.751