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This page was generated on 2025-09-18 11:40 -0400 (Thu, 18 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4608
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4549
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4581
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1928/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scp 1.18.0  (landing page)
Christophe Vanderaa
Snapshot Date: 2025-09-15 13:40 -0400 (Mon, 15 Sep 2025)
git_url: https://git.bioconductor.org/packages/scp
git_branch: RELEASE_3_21
git_last_commit: d05ad64
git_last_commit_date: 2025-04-15 12:11:18 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    ERROR    OK  
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for scp on kunpeng2

To the developers/maintainers of the scp package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scp.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: scp
Version: 1.18.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data scp
StartedAt: 2025-09-16 11:55:02 -0000 (Tue, 16 Sep 2025)
EndedAt: 2025-09-16 12:28:55 -0000 (Tue, 16 Sep 2025)
EllapsedTime: 2032.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data scp
###
##############################################################################
##############################################################################


* checking for file ‘scp/DESCRIPTION’ ... OK
* preparing ‘scp’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘QFeatures_nutshell.Rmd’ using rmarkdown
--- finished re-building ‘QFeatures_nutshell.Rmd’

--- re-building ‘advanced.Rmd’ using rmarkdown
--- finished re-building ‘advanced.Rmd’

--- re-building ‘read_scp.Rmd’ using rmarkdown
--- finished re-building ‘read_scp.Rmd’

--- re-building ‘reporting_missing_values.Rmd’ using rmarkdown

Quitting from reporting_missing_values.Rmd:56-60 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH8301
  title: leduc2022_pSCoPE
  reason: 1 resources failed to download
---
Backtrace:
     ▆
  1. └─scpdata::leduc2022()
  2.   └─ExperimentHub (local) leduc2022_pSCoPE()
  3.     ├─eh1[[1L]]
  4.     └─eh1[[1L]]
  5.       └─ExperimentHub (local) .local(x, i, j = j, ...)
  6.         ├─methods::callNextMethod(x, i, j, ..., force = force, verbose = verbose)
  7.         │ └─base::eval(call, callEnv)
  8.         │   └─base::eval(call, callEnv)
  9.         └─AnnotationHub (local) .nextMethod(x, i, j, ..., force = force, verbose = verbose)
 10.           └─AnnotationHub (local) .local(x, i, j = j, ...)
 11.             └─AnnotationHub:::.Hub_get1(x[i], force = force, verbose = verbose)
 12.               └─base::tryCatch(...)
 13.                 └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 14.                   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 15.                     └─value[[3L]](cond)
 16.                       └─base::tryCatch(...)
 17.                         └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 18.                           └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 19.                             └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'reporting_missing_values.Rmd' failed with diagnostics:
failed to load resource
  name: EH8301
  title: leduc2022_pSCoPE
  reason: 1 resources failed to download
--- failed re-building ‘reporting_missing_values.Rmd’

--- re-building ‘scp.Rmd’ using rmarkdown
--- finished re-building ‘scp.Rmd’

--- re-building ‘scp_data_modelling.Rmd’ using rmarkdown
Warning: ggrepel: 13 unlabeled data points (too many overlaps). Consider increasing max.overlaps
--- finished re-building ‘scp_data_modelling.Rmd’

SUMMARY: processing the following file failed:
  ‘reporting_missing_values.Rmd’

Error: Vignette re-building failed.
Execution halted