Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:06 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1879/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scHOT 1.18.0 (landing page) Shila Ghazanfar
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the scHOT package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scHOT.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: scHOT |
Version: 1.18.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:scHOT.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings scHOT_1.18.0.tar.gz |
StartedAt: 2024-12-20 09:15:12 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 09:24:44 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 571.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: scHOT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:scHOT.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings scHOT_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/scHOT.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘scHOT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘scHOT’ version ‘1.18.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘scHOT’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed scHOT 54.889 0.474 58.625 scHOT_estimatePvalues 54.012 0.294 55.206 scHOT_performPermutationTest 53.224 0.319 55.986 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
scHOT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL scHOT ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘scHOT’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scHOT)
scHOT.Rcheck/scHOT-Ex.timings
name | user | system | elapsed | |
params-set | 0.588 | 0.010 | 0.655 | |
plotColouredExpression | 2.152 | 0.118 | 2.470 | |
plotHigherOrderSequence | 3.832 | 0.046 | 4.126 | |
positionColData-set | 0.204 | 0.004 | 0.219 | |
positionType-set | 0.206 | 0.005 | 0.225 | |
scHOT | 54.889 | 0.474 | 58.625 | |
scHOT_addTestingScaffold | 0.249 | 0.004 | 0.288 | |
scHOT_buildFromMatrix | 0.185 | 0.002 | 0.216 | |
scHOT_buildFromSCE | 0.623 | 0.022 | 0.678 | |
scHOT_calculateGlobalHigherOrderFunction | 0.363 | 0.005 | 0.370 | |
scHOT_calculateHigherOrderTestStatistics | 0.974 | 0.011 | 1.018 | |
scHOT_estimatePvalues | 54.012 | 0.294 | 55.206 | |
scHOT_output-set | 0.210 | 0.004 | 0.215 | |
scHOT_performPermutationTest | 53.224 | 0.319 | 55.986 | |
scHOT_setPermutationScaffold | 0.388 | 0.006 | 0.395 | |
scHOT_setWeightMatrix | 0.294 | 0.004 | 0.299 | |
scHOT_stripOutput | 0.192 | 0.002 | 0.196 | |
spatialWeightMatrix | 0.009 | 0.001 | 0.009 | |
testingScaffold-set | 0.212 | 0.003 | 0.216 | |
thin | 0.017 | 0.001 | 0.019 | |
trajectoryWeightMatrix | 0.006 | 0.001 | 0.008 | |
weightMatrix-set | 0.494 | 0.024 | 0.519 | |
weightedPearson | 0.000 | 0.000 | 0.001 | |
weightedSpearman | 0.001 | 0.001 | 0.001 | |
weightedVariance | 0.000 | 0.000 | 0.001 | |
weightedZIKendall | 0.002 | 0.000 | 0.003 | |
weightedZISpearman | 0.001 | 0.001 | 0.002 | |