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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD INSTALL rsbml
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* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘rsbml’ ...
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for LIBSBML... yes
configure: === Begin local SOSLib build ===
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... config/config.guess: unable to guess system type

This script, last modified 2008-01-23, has failed to recognize
the operating system you are using. It is advised that you
download the most up to date version of the config scripts from

  http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD
and
  http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD

If the version you run (config/config.guess) is already up to date, please
send the following data and any information you think might be
pertinent to <config-patches@gnu.org> in order to provide the needed
information to handle your system.

config.guess timestamp = 2008-01-23

uname -m = aarch64
uname -r = 5.10.0-136.85.0.166.oe2203sp1.aarch64
uname -s = Linux
uname -v = #1 SMP Wed Jul 17 17:20:17 CST 2024

/usr/bin/uname -p = aarch64
/bin/uname -X     = 

hostinfo               = 
/bin/universe          = 
/usr/bin/arch -k       = 
/bin/arch              = aarch64
/usr/bin/oslevel       = 
/usr/convex/getsysinfo = 

UNAME_MACHINE = aarch64
UNAME_RELEASE = 5.10.0-136.85.0.166.oe2203sp1.aarch64
UNAME_SYSTEM  = Linux
UNAME_VERSION = #1 SMP Wed Jul 17 17:20:17 CST 2024
configure: error: cannot guess build type; you must specify one
configure: === End local SOSLib build ===
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’
using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2     -I/usr/local/include    -fPIC  -g -O2  -Wall -c StringMap.c -o StringMap.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2     -I/usr/local/include    -fPIC  -g -O2  -Wall -c check.c -o check.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2     -I/usr/local/include    -fPIC  -g -O2  -Wall -c doc.c -o doc.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2     -I/usr/local/include    -fPIC  -g -O2  -Wall -c dom.c -o dom.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2     -I/usr/local/include    -fPIC  -g -O2  -Wall -c graph.c -o graph.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2     -I/usr/local/include    -fPIC  -g -O2  -Wall -c init.c -o init.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2     -I/usr/local/include    -fPIC  -g -O2  -Wall -c io.c -o io.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2     -I/usr/local/include    -fPIC  -g -O2  -Wall  -c layoutWrappers.cpp -o layoutWrappers.o
In file included from /home/biocbuild/libsbml-from-git/include/sbml/SBMLErrorLog.h:112,
                 from /home/biocbuild/libsbml-from-git/include/sbml/SBMLDocument.h:305,
                 from /home/biocbuild/libsbml-from-git/include/sbml/SBMLTypes.h:48,
                 from rsbml.h:1,
                 from layoutWrappers.cpp:1:
/home/biocbuild/libsbml-from-git/include/sbml/xml/XMLErrorLog.h:211:16: warning: 'virtual void XMLErrorLog::add(const std::vector<XMLError*>&)' was hidden [-Woverloaded-virtual=]
  211 |   virtual void add (const std::vector<XMLError*>& errors);
      |                ^~~
/home/biocbuild/libsbml-from-git/include/sbml/SBMLErrorLog.h:326:8: note:   by 'SBMLErrorLog::add'
  326 |   void add (const std::vector<SBMLError>& errors);
      |        ^~~
/home/biocbuild/libsbml-from-git/include/sbml/xml/XMLErrorLog.h:200:16: warning: 'virtual void XMLErrorLog::add(const std::__cxx11::list<XMLError>&)' was hidden [-Woverloaded-virtual=]
  200 |   virtual void add (const std::list<XMLError>& errors);
      |                ^~~
/home/biocbuild/libsbml-from-git/include/sbml/SBMLErrorLog.h:326:8: note:   by 'SBMLErrorLog::add'
  326 |   void add (const std::vector<SBMLError>& errors);
      |        ^~~
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2     -I/usr/local/include    -fPIC  -g -O2  -Wall -c mathml.c -o mathml.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/home/biocbuild/libsbml-from-git/include -I/usr/include/libxml2     -I/usr/local/include    -fPIC  -g -O2  -Wall -c simulate.c -o simulate.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o rsbml.so StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -L/home/biocbuild/libsbml-from-git/lib -lsbml -L/home/biocbuild/R/R-4.4.1/lib -lR
installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-rsbml/00new/rsbml/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘rsbml’:
 .onLoad failed in loadNamespace() for 'rsbml', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/biocbuild/R/R-4.4.1/site-library/00LOCK-rsbml/00new/rsbml/libs/rsbml.so':
  /home/biocbuild/libsbml-from-git/lib/libsbml.so.5: undefined symbol: _ZTI13ElementFilter
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/biocbuild/R/R-4.4.1/site-library/rsbml’