Jitao David Zhang
| Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/rqubic |
| git_branch: devel |
| git_last_commit: fdcc059 |
| git_last_commit_date: 2024-04-30 10:25:13 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-16 11:41 -0400 (Tue, 16 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1767/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rqubic 1.51.0 (landing page) Jitao David Zhang
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
|
To the developers/maintainers of the rqubic package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rqubic.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rqubic |
| Version: 1.51.0 |
| Command: rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=rqubic.buildbin-libdir rqubic_1.51.0.tar.gz |
| StartedAt: 2024-07-16 06:41:06 -0400 (Tue, 16 Jul 2024) |
| EndedAt: 2024-07-16 06:41:22 -0400 (Tue, 16 Jul 2024) |
| EllapsedTime: 15.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: rqubic_1.51.0.zip |
| PackageFileSize: 436.2 KiB |
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### Running command:
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### rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=rqubic.buildbin-libdir rqubic_1.51.0.tar.gz
###
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* installing *source* package 'rqubic' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bicluster.c -o bicluster.o
bicluster.c: In function 'seed_intersect_r':
bicluster.c:354:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
354 | if (flag=ss) (*m_cnt)++;
| ^~~~
gcc -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c discretize.c -o discretize.o
In file included from discretize.c:9:
rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
62 | static const char *MINCOL_ATT_NAME="minimumCol";
| ^~~~~~~~~~~~~~~
rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
61 | static const char *EDGELIST_ATT_NAME="edgelist";
| ^~~~~~~~~~~~~~~~~
gcc -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fib.c -o fib.o
In file included from fib.c:35:
rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
62 | static const char *MINCOL_ATT_NAME="minimumCol";
| ^~~~~~~~~~~~~~~
rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
61 | static const char *EDGELIST_ATT_NAME="edgelist";
| ^~~~~~~~~~~~~~~~~
gcc -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o
In function 'compare_edges',
inlined from 'fh_insert_fixed' at graph.c:41:9,
inlined from 'generate_sorted_seeds' at graph.c:147:7:
graph.c:31:13: warning: array subscript 'struct Edge[0]' is partly outside array bounds of 'struct Edge[0]' [-Warray-bounds=]
31 | const int score_a = ((pEdge)a)->score;
| ^~~~~~~
graph.c: In function 'generate_sorted_seeds':
graph.c:131:9: note: object '_cur_min' of size 8
131 | pEdge _cur_min = &__cur_min;
| ^~~~~~~~
gcc -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rqubic.c -o rqubic.o
In file included from rqubic.c:5:
rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
62 | static const char *MINCOL_ATT_NAME="minimumCol";
| ^~~~~~~~~~~~~~~
rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
61 | static const char *EDGELIST_ATT_NAME="edgelist";
| ^~~~~~~~~~~~~~~~~
gcc -shared -s -static-libgcc -o rqubic.dll tmp.def bicluster.o discretize.o fib.o graph.o rqubic.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/meat/rqubic.buildbin-libdir/00LOCK-rqubic/00new/rqubic/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'rqubic' as rqubic_1.51.0.zip
* DONE (rqubic)