##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:rhdf5filters.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings rhdf5filters_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/rhdf5filters.Rcheck’
* using R version 4.5.1 Patched (2025-06-14 r88325)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rhdf5filters/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rhdf5filters’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rhdf5filters’ can be installed ... OK
* used C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘tinytest.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/rhdf5filters.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL rhdf5filters
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘rhdf5filters’ ...
** this is package ‘rhdf5filters’ version ‘1.20.0’
** using staged installation
checking for gcc... clang -arch arm64 -std=gnu2x
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang -arch arm64 -std=gnu2x accepts -g... yes
checking for clang -arch arm64 -std=gnu2x option to enable C11 features... -std=gnu11
configure: is Bioc build machine
configure: configuring BZIP2 filter...
configure: compiling bundled bzip2 library
configure: configuring the Zstd filter...
configure: compiling bundled Zstd library
configure: configuring the BLOSC filter...
configure: compiling bundled BLOSC library
checking whether C compiler accepts -msse2... yes
configure: Bioc build machine; disabling MAVX2
configure: configuring the VBZ filter
machine=arm64
CPU_ARCH=arm64
VBZ_FLAGS=-D__ARM_NEON__
configure: creating ./config.status
config.status: creating src/bzip2/Makefile
config.status: creating src/zstd/Makefile
config.status: creating src/blosc/lib/blosc-1.20.1/Makefile
config.status: creating src/blosc/Makefile
config.status: creating src/vbz/Makefile
config.status: creating src/vbz/vbz/Makefile
config.status: creating src/vbz/third_party/streamvbyte/Makefile
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
make -C zstd
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o
rm -f libzstd.a
ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o
ranlib libzstd.a
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -shared H5Zzstd.c -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" \
	-I. -Icommon ../zstd/libzstd.a -L/opt/R/arm64/lib -o libH5Zzstd.so
make -C blosc
make -C lib/snappy-1.1.1
clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -c snappy.cc
snappy.cc:567:13: warning: unused function 'ComputeTable' [-Wunused-function]
static void ComputeTable() {
            ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -c snappy-c.cc
clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -c snappy-sinksource.cc
clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -c snappy-stubs-internal.cc
make -C lib/lz4-1.9.4
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -c lz4.c
lz4.c:1064:44: warning: use of logical '||' with constant operand [-Wconstant-logical-operand]
                if ( ((tableType != byU16) || (LZ4_DISTANCE_MAX < LZ4_DISTANCE_ABSOLUTE_MAX))
                                           ^  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lz4.c:1064:44: note: use '|' for a bitwise operation
                if ( ((tableType != byU16) || (LZ4_DISTANCE_MAX < LZ4_DISTANCE_ABSOLUTE_MAX))
                                           ^~
                                           |
lz4.c:1250:39: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand]
              && (((tableType==byU16) && (LZ4_DISTANCE_MAX == LZ4_DISTANCE_ABSOLUTE_MAX)) ? 1 : (matchIndex+LZ4_DISTANCE_MAX >= current))
                                      ^  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lz4.c:1250:39: note: use '&' for a bitwise operation
              && (((tableType==byU16) && (LZ4_DISTANCE_MAX == LZ4_DISTANCE_ABSOLUTE_MAX)) ? 1 : (matchIndex+LZ4_DISTANCE_MAX >= current))
                                      ^~
                                      &
lz4.c:1250:39: note: remove constant to silence this warning
              && (((tableType==byU16) && (LZ4_DISTANCE_MAX == LZ4_DISTANCE_ABSOLUTE_MAX)) ? 1 : (matchIndex+LZ4_DISTANCE_MAX >= current))
                                     ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2 warnings generated.
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -c lz4hc.c
make -C lib/blosc-1.20.1 all
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c bitshuffle-generic.c
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c shuffle-generic.c
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd     -c shuffle.c
shuffle.c:321:22: warning: unused variable 'cpu_features' [-Wunused-variable]
  blosc_cpu_features cpu_features = blosc_get_cpu_features();
                     ^
In file included from shuffle.c:12:
./shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function]
static void shuffle_generic_inline(const size_t type_size,
            ^
./shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function]
static void unshuffle_generic_inline(const size_t type_size,
            ^
3 warnings generated.
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c blosclz.c
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c blosc.c
blosc.c:737:11: warning: variable 'ctbytes' set but not used [-Wunused-but-set-variable]
  int32_t ctbytes = 0;           /* number of compressed bytes in block */
          ^
1 warning generated.
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c fastcopy.c
fastcopy.c:63:30: warning: unused function 'copy_5_bytes' [-Wunused-function]
static inline unsigned char *copy_5_bytes(unsigned char *out, const unsigned char *from) {
                             ^
fastcopy.c:68:30: warning: unused function 'copy_6_bytes' [-Wunused-function]
static inline unsigned char *copy_6_bytes(unsigned char *out, const unsigned char *from) {
                             ^
fastcopy.c:73:30: warning: unused function 'copy_7_bytes' [-Wunused-function]
static inline unsigned char *copy_7_bytes(unsigned char *out, const unsigned char *from) {
                             ^
3 warnings generated.
rm -f libblosc.a
ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.4/lz4.o lib/lz4-1.9.4/lz4hc.o 
ranlib libblosc.a
clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -shared -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" H5Zblosc.cpp \
	-L/opt/R/arm64/lib -I./lib/blosc-1.20.1 ./libblosc.a ../zstd/libzstd.a -lz -o libH5Zblosc.so 
make -C bzip2
make -C bzip2-1.0.8
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c blocksort.c
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c huffman.c
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c crctable.c
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c randtable.c
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c compress.c
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c decompress.c
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c bzlib.c
rm -f libbz2.a
ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o
ranlib libbz2.a
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -shared H5Zbzip2.c -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" \
	-Ibzip2-1.0.8 bzip2-1.0.8/libbz2.a -L/opt/R/arm64/lib -o libH5Zbz2.so
make -C lzf
make -C lzf
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -c lzf_c.c
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -c lzf_d.c
rm -f liblzf.a
ar cq liblzf.a lzf_c.o lzf_d.o
ranlib liblzf.a
clang -arch arm64 -std=gnu2x -falign-functions=64 -Wall -g -O2 -fPIC -shared H5Zlzf.c -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" \
	-I./lzf/ ./lzf/liblzf.a -L/opt/R/arm64/lib -o libH5Zlzf.so
make -C vbz
make -C third_party/streamvbyte
clang -arch arm64 -std=gnu99 -falign-functions=64 -Wall -g -O2 -fPIC -Iinclude -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include"   -c ./src/streamvbyte_decode.c
clang -arch arm64 -std=gnu99 -falign-functions=64 -Wall -g -O2 -fPIC -Iinclude -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include"   -c ./src/streamvbyte_encode.c
clang -arch arm64 -std=gnu99 -falign-functions=64 -Wall -g -O2 -fPIC -Iinclude -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include"   -c ./src/streamvbytedelta_decode.c
clang -arch arm64 -std=gnu99 -falign-functions=64 -Wall -g -O2 -fPIC -Iinclude -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include"   -c ./src/streamvbytedelta_encode.c
clang -arch arm64 -std=gnu99 -falign-functions=64 -Wall -g -O2 -fPIC -Iinclude -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include"   -c ./src/streamvbyte_0124_encode.c
clang -arch arm64 -std=gnu99 -falign-functions=64 -Wall -g -O2 -fPIC -Iinclude -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include"   -c ./src/streamvbyte_0124_decode.c
clang -arch arm64 -std=gnu99 -falign-functions=64 -Wall -g -O2 -fPIC -Iinclude -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include"   -c ./src/streamvbyte_zigzag.c
rm -f libstreamvbyte.a
ar cq libstreamvbyte.a streamvbyte_decode.o streamvbyte_encode.o streamvbytedelta_decode.o streamvbytedelta_encode.o streamvbyte_0124_encode.o streamvbyte_0124_decode.o streamvbyte_zigzag.o
ranlib libstreamvbyte.a 
make -C vbz
clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -D__ARM_NEON__ -c vbz.cpp -o vbz.o
clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -D__ARM_NEON__ -c v0/vbz_streamvbyte.cpp -o v0/vbz_streamvbyte.o
clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -D__ARM_NEON__ -c v1/vbz_streamvbyte.cpp -o v1/vbz_streamvbyte.o
rm -f libvbz.a
ar cq libvbz.a vbz/vbz.o vbz/v0/vbz_streamvbyte.o vbz/v1/vbz_streamvbyte.o
ranlib libvbz.a
clang++ -arch arm64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -shared vbz_plugin.cpp \
	libvbz.a -L/opt/R/arm64/lib ../zstd/libzstd.a third_party/streamvbyte/libstreamvbyte.a -o libH5Zvbz.so
mkdir -p "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/"
cp bzip2/libH5Zbz2.so blosc/libH5Zblosc.so lzf/libH5Zlzf.so zstd/libH5Zzstd.so vbz/libH5Zvbz.so "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/"
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I"/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include" -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include   -falign-functions=64 -Wall -g -O2 -fPIC  -falign-functions=64 -Wall -g -O2  -c rhdf5filters.c -o rhdf5filters.o
clang -arch arm64 -std=gnu2x -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o rhdf5filters.so rhdf5filters.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rhdf5filters)

R version 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> if (requireNamespace("tinytest", quietly = TRUE)) {
+   tinytest::test_package("rhdf5filters")
+ }

test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............  252 tests OK 
test-filter-io.R..............  306 tests OK 
test-filter-io.R..............  312 tests OK 2.1s

test-filter-read.R............    0 tests    
test-filter-read.R............    0 tests    
test-filter-read.R............    0 tests    
test-filter-read.R............    0 tests    
test-filter-read.R............    0 tests    
test-filter-read.R............    0 tests    
test-filter-read.R............    5 tests OK 49ms

test-plugin-path.R............    0 tests    
test-plugin-path.R............    1 tests OK 
test-plugin-path.R............    2 tests OK 
test-plugin-path.R............    3 tests OK 4ms
All ok, 320 results (2.2s)
> 
> proc.time()
   user  system elapsed 
  2.068   0.407   2.499