Vincent Carey
| Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/rhdf5client |
| git_branch: devel |
| git_last_commit: 6e27c0c |
| git_last_commit_date: 2024-05-02 11:25:07 -0400 (Thu, 02 May 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-16 11:41 -0400 (Tue, 16 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1711/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rhdf5client 1.27.1 (landing page) Vincent Carey
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the rhdf5client package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5client.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rhdf5client |
| Version: 1.27.1 |
| Command: rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5client.buildbin-libdir rhdf5client_1.27.1.tar.gz |
| StartedAt: 2024-07-16 06:39:20 -0400 (Tue, 16 Jul 2024) |
| EndedAt: 2024-07-16 06:39:42 -0400 (Tue, 16 Jul 2024) |
| EllapsedTime: 21.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: rhdf5client_1.27.1.zip |
| PackageFileSize: 985.5 KiB |
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### Running command:
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### rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5client.buildbin-libdir rhdf5client_1.27.1.tar.gz
###
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* installing *source* package 'rhdf5client' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c extract.c -o extract.o
extract.c: In function 'extractBin':
extract.c:101:52: warning: 'rip' may be used uninitialized [-Wmaybe-uninitialized]
101 | A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
| ^
extract.c:89:8: note: 'rip' was declared here
89 | int *rip;
| ^~~
extract.c:101:42: warning: 'rdp' may be used uninitialized [-Wmaybe-uninitialized]
101 | A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
| ^
extract.c:90:11: note: 'rdp' was declared here
90 | double *rdp;
| ^~~
gcc -shared -s -static-libgcc -o rhdf5client.dll tmp.def extract.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5client.buildbin-libdir/00LOCK-rhdf5client/00new/rhdf5client/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'rhdf5client' as rhdf5client_1.27.1.zip
* DONE (rhdf5client)