Multiple platform build/check report for BioC 3.21 - BUILD results for rhdf5client on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4823
palomino7	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4565
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4603
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4544
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for rhdf5client on kunpeng2

To the developers/maintainers of the rhdf5client package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5client.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: rhdf5client

Version: 1.30.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data rhdf5client

StartedAt: 2025-08-08 03:48:24 -0000 (Fri, 08 Aug 2025)

EndedAt: 2025-08-08 03:49:09 -0000 (Fri, 08 Aug 2025)

EllapsedTime: 45.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data rhdf5client
###
##############################################################################
##############################################################################


* checking for file ‘rhdf5client/DESCRIPTION’ ... OK
* preparing ‘rhdf5client’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘delayed-array.Rmd’ using rmarkdown

Quitting from delayed-array.Rmd:32-38 [lkdela3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [hsdsdev.bioconductor.org]: Connection timed out after 10001 milliseconds
---
Backtrace:
    ▆
 1. ├─rhdf5client::check_hsds()
 2. │ └─httr::GET(tst)
 3. │   └─httr:::request_perform(req, hu$handle$handle)
 4. │     ├─httr:::request_fetch(req$output, req$url, handle)
 5. │     └─httr:::request_fetch.write_memory(req$output, req$url, handle)
 6. │       └─curl::curl_fetch_memory(url, handle = handle)
 7. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'delayed-array.Rmd' failed with diagnostics:
Timeout was reached [hsdsdev.bioconductor.org]: Connection timed out after 10001 milliseconds
--- failed re-building ‘delayed-array.Rmd’

SUMMARY: processing the following file failed:
  ‘delayed-array.Rmd’

Error: Vignette re-building failed.
Execution halted