Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-09 21:31 -0500 (Sat, 09 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4505 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4506 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4538 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4486 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1630/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
qpgraph 2.40.0 (landing page) Robert Castelo
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the qpgraph package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qpgraph.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: qpgraph |
Version: 2.40.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qpgraph |
StartedAt: 2024-11-08 15:24:07 -0500 (Fri, 08 Nov 2024) |
EndedAt: 2024-11-08 15:24:27 -0500 (Fri, 08 Nov 2024) |
EllapsedTime: 20.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qpgraph ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘qpgraph’ ... ** using staged installation checking for gcc... clang -arch arm64 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch arm64 accepts -g... yes checking for clang -arch arm64 option to accept ANSI C... none needed checking build system type... aarch64-apple-darwin22.6.0 checking host system type... aarch64-apple-darwin22.6.0 configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC -falign-functions=64 -Wall -g -O2 -c cliquer.c -o cliquer.o cliquer.c:13:46: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ cliquer.c:13:52: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ In file included from cliquer.c:29: In file included from ./cliquer.h:7: ./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ ./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ 4 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC -falign-functions=64 -Wall -g -O2 -c graph.c -o graph.o graph.c:12:46: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ graph.c:12:52: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ In file included from graph.c:28: In file included from ./graph.h:5: ./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ ./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ 4 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC -falign-functions=64 -Wall -g -O2 -c qpgraph.c -o qpgraph.o In file included from qpgraph.c:41: In file included from ./cliquer.h:7: ./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ ./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ qpgraph.c:5154:10: warning: variable 'avgpr' set but not used [-Wunused-but-set-variable] double avgpr = 0; ^ 3 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC -falign-functions=64 -Wall -g -O2 -c reorder.c -o reorder.o reorder.c:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ reorder.c:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ In file included from reorder.c:16: In file included from ./reorder.h:5: ./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ ./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8] * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd. ^ 4 warnings generated. clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-qpgraph/00new/qpgraph/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qpgraph)