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This page was generated on 2024-11-09 21:31 -0500 (Sat, 09 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4505
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4538
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4486
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1630/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qpgraph 2.40.0  (landing page)
Robert Castelo
Snapshot Date: 2024-11-08 13:40 -0500 (Fri, 08 Nov 2024)
git_url: https://git.bioconductor.org/packages/qpgraph
git_branch: RELEASE_3_20
git_last_commit: 078b5fe
git_last_commit_date: 2024-10-29 09:30:44 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    WARNINGS    OK  YES
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


INSTALL results for qpgraph on kjohnson3

To the developers/maintainers of the qpgraph package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qpgraph.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: qpgraph
Version: 2.40.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qpgraph
StartedAt: 2024-11-08 15:24:07 -0500 (Fri, 08 Nov 2024)
EndedAt: 2024-11-08 15:24:27 -0500 (Fri, 08 Nov 2024)
EllapsedTime: 20.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qpgraph
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘qpgraph’ ...
** using staged installation
checking for gcc... clang -arch arm64
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch arm64 accepts -g... yes
checking for clang -arch arm64 option to accept ANSI C... none needed
checking build system type... aarch64-apple-darwin22.6.0
checking host system type... aarch64-apple-darwin22.6.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T  -I/opt/R/arm64/include   -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC  -falign-functions=64 -Wall -g -O2  -c cliquer.c -o cliquer.o
cliquer.c:13:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
cliquer.c:13:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
In file included from cliquer.c:29:
In file included from ./cliquer.h:7:
./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T  -I/opt/R/arm64/include   -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC  -falign-functions=64 -Wall -g -O2  -c graph.c -o graph.o
graph.c:12:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
graph.c:12:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
In file included from graph.c:28:
In file included from ./graph.h:5:
./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
4 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T  -I/opt/R/arm64/include   -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC  -falign-functions=64 -Wall -g -O2  -c qpgraph.c -o qpgraph.o
In file included from qpgraph.c:41:
In file included from ./cliquer.h:7:
./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
qpgraph.c:5154:10: warning: variable 'avgpr' set but not used [-Wunused-but-set-variable]
  double avgpr = 0;
         ^
3 warnings generated.
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -DUSE_FC_LEN_T  -I/opt/R/arm64/include   -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fPIC  -falign-functions=64 -Wall -g -O2  -c reorder.c -o reorder.o
reorder.c:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
reorder.c:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
In file included from reorder.c:16:
In file included from ./reorder.h:5:
./set.h:9:46: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                             ^
./set.h:9:52: warning: invalid UTF-8 in comment [-Winvalid-utf8]
 * Copyright (C) 2002 Sampo Niskanen, Patric <D6>sterg<E5>rd.
                                                      ^
4 warnings generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-qpgraph/00new/qpgraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qpgraph)