Multiple platform build/check report for BioC 3.20 - CHECK results for puma on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4744
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4487
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4515
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4467
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for puma on nebbiolo2

To the developers/maintainers of the puma package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/puma.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: puma

Version: 3.48.0

Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:puma.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings puma_3.48.0.tar.gz

StartedAt: 2024-12-20 04:25:31 -0500 (Fri, 20 Dec 2024)

EndedAt: 2024-12-20 04:31:28 -0500 (Fri, 20 Dec 2024)

EllapsedTime: 357.4 seconds

RetCode: 0

Status: OK

CheckDir: puma.Rcheck

Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:puma.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings puma_3.48.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/puma.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘puma/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘puma’ version ‘3.48.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘puma’ can be installed ... OK
* used C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘oligoClasses’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘ROCR’ ‘limma’ ‘pumadata’ ‘snow’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
':::' calls which should be '::':
  ‘affy:::mm’ ‘affy:::pm’ ‘affy:::probeNames’ ‘oligo:::mm’ ‘oligo:::pm’
  ‘oligo:::probeNames’ ‘oligo:::rma’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
PMmmgmos: no visible binding for global variable ‘median’
PMmmgmos: no visible global function definition for ‘description’
calcAUC: no visible global function definition for ‘prediction’
calcAUC: no visible global function definition for ‘performance’
calculateLimma: no visible global function definition for ‘lmFit’
calculateLimma: no visible global function definition for
  ‘contrasts.fit’
calculateLimma: no visible global function definition for ‘eBayes’
calculateTtest : <anonymous>: no visible global function definition for
  ‘t.test’
clusterApplyLBDots : submit: no visible global function definition for
  ‘sendCall’
clusterApplyLBDots: no visible global function definition for
  ‘recvOneResult’
clusterNormE: no visible global function definition for ‘var’
clusterNormVar: no visible global function definition for ‘var’
compareLimmapumaDE: no visible global function definition for ‘pdf’
compareLimmapumaDE: no visible global function definition for ‘dev.off’
compareLimmapumaDE: no visible global function definition for ‘par’
compareLimmapumaDE: no visible global function definition for
  ‘vennDiagram’
createDesignMatrix: no visible global function definition for
  ‘model.matrix’
erfc: no visible global function definition for ‘pnorm’
gmhta: no visible global function definition for ‘clusterEvalQ’
gmhta: no visible global function definition for ‘data’
gmhta: no visible global function definition for ‘clusterApplyLB’
gmhta: no visible global function definition for ‘stopCluster’
gmhta: no visible binding for global variable ‘median’
gmoExon: no visible global function definition for ‘clusterEvalQ’
gmoExon: no visible global function definition for ‘data’
gmoExon: no visible global function definition for ‘clusterApplyLB’
gmoExon: no visible global function definition for ‘stopCluster’
gmoExon: no visible binding for global variable ‘median’
igmoExon: no visible global function definition for ‘clusterEvalQ’
igmoExon: no visible global function definition for ‘read.table’
igmoExon: no visible global function definition for ‘data’
igmoExon: no visible global function definition for ‘clusterApplyLB’
igmoExon: no visible global function definition for ‘stopCluster’
igmoExon: no visible binding for global variable ‘median’
just.mgmos: no visible binding for global variable ‘median’
just.mmgmos: no visible binding for global variable ‘median’
legend2: no visible global function definition for ‘par’
legend2: no visible global function definition for ‘xy.coords’
legend2 : rect2: no visible global function definition for ‘rect’
legend2 : segments2: no visible global function definition for
  ‘segments’
legend2 : points2: no visible global function definition for ‘points’
legend2 : text2: no visible global function definition for ‘text’
legend2: no visible global function definition for ‘strwidth’
legend2: no visible global function definition for ‘xinch’
legend2: no visible global function definition for ‘yinch’
legend2: no visible global function definition for ‘strheight’
matrixDistance: no visible global function definition for ‘dist’
mgmos: no visible binding for global variable ‘median’
mmgmos: no visible binding for global variable ‘median’
plot.pumaPCARes: no visible global function definition for ‘text’
plot.pumaPCARes: no visible global function definition for ‘legend’
plotErrorBars: no visible global function definition for ‘qnorm’
plotErrorBars: no visible global function definition for ‘par’
plotErrorBars: no visible global function definition for ‘even’
plotErrorBars: no visible global function definition for ‘odd’
plotErrorBars: no visible global function definition for ‘arrows’
plotErrorBars: no visible global function definition for ‘points’
plotErrorBars: no visible global function definition for ‘axis’
plotErrorBars: no visible global function definition for ‘title’
plotHistTwoClasses: no visible global function definition for ‘axis’
plotHistTwoClasses: no visible global function definition for ‘box’
plotROC: no visible global function definition for ‘prediction’
plotROC: no visible global function definition for ‘performance’
plotWhiskers: no visible global function definition for ‘segments’
plotWhiskers: no visible global function definition for ‘qnorm’
plotWhiskers: no visible global function definition for ‘points’
plotWhiskers: no visible global function definition for ‘abline’
pumaClust: no visible global function definition for ‘read.csv’
pumaClust: no visible global function definition for ‘kmeans’
pumaClust: no visible global function definition for ‘cov’
pumaClustii: no visible global function definition for ‘read.csv’
pumaClustii: no visible global function definition for ‘cov’
pumaComb: no visible global function definition for ‘getMPIcluster’
pumaComb: no visible global function definition for ‘makeCluster’
pumaComb: no visible global function definition for ‘clusterEvalQ’
pumaComb: no visible global function definition for ‘clusterApplyLB’
pumaCombImproved: no visible global function definition for
  ‘getMPIcluster’
pumaCombImproved: no visible global function definition for
  ‘makeCluster’
pumaCombImproved: no visible global function definition for
  ‘clusterEvalQ’
pumaCombImproved: no visible global function definition for
  ‘clusterApplyLB’
pumaFull: no visible global function definition for ‘pdf’
pumaFull: no visible global function definition for ‘par’
pumaFull: no visible global function definition for ‘prcomp’
pumaFull: no visible global function definition for ‘dev.off’
pumaNormalize: no visible binding for global variable ‘median’
pumaPCA: no visible global function definition for ‘prcomp’
pumaPCA: no visible global function definition for ‘rnorm’
pumaPCA: no visible global function definition for ‘optimise’
pumaPCA: no visible global function definition for ‘optim’
pumaPCA: no visible global function definition for ‘par’
pumaPCARemoveRedundancy: no visible global function definition for
  ‘dist’
write.reslts,DEResult: no visible global function definition for
  ‘write.table’
write.reslts,ExpressionSet: no visible global function definition for
  ‘write.table’
write.reslts,exprReslt: no visible global function definition for
  ‘write.table’
write.reslts,pumaPCARes: no visible global function definition for
  ‘write.table’
Undefined global functions or variables:
  abline arrows axis box clusterApplyLB clusterEvalQ contrasts.fit cov
  data description dev.off dist eBayes even getMPIcluster kmeans legend
  lmFit makeCluster median model.matrix odd optim optimise par pdf
  performance pnorm points prcomp prediction qnorm read.csv read.table
  rect recvOneResult rnorm segments sendCall stopCluster strheight
  strwidth t.test text title var vennDiagram write.table xinch
  xy.coords yinch
Consider adding
  importFrom("grDevices", "dev.off", "pdf", "xy.coords")
  importFrom("graphics", "abline", "arrows", "axis", "box", "legend",
             "par", "points", "rect", "segments", "strheight",
             "strwidth", "text", "title", "xinch", "yinch")
  importFrom("stats", "cov", "dist", "kmeans", "median", "model.matrix",
             "optim", "optimise", "pnorm", "prcomp", "qnorm", "rnorm",
             "t.test", "var")
  importFrom("utils", "data", "read.csv", "read.table", "write.table")
to your NAMESPACE file.
* checking Rd files ... NOTE
checkRd: (-1) DEResult-class.Rd:92: Escaped LaTeX specials: \_
checkRd: (-1) DEResult-class.Rd:93: Escaped LaTeX specials: \_
checkRd: (-1) PMmmgmos.Rd:26: Escaped LaTeX specials: \_
checkRd: (-1) PMmmgmos.Rd:37: Escaped LaTeX specials: \_
checkRd: (-1) createContrastMatrix.Rd:20: Escaped LaTeX specials: \&
checkRd: (-1) exprReslt-class.Rd:100: Escaped LaTeX specials: \_
checkRd: (-1) exprReslt-class.Rd:101: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) exprReslt-class.Rd:102: Escaped LaTeX specials: \_ \_ \_
checkRd: (-1) gmhta.Rd:26: Escaped LaTeX specials: \_
checkRd: (-1) gmoExon.Rd:28: Escaped LaTeX specials: \_
checkRd: (-1) hcomb.Rd:22: Escaped LaTeX specials: \_
checkRd: (-1) hcomb.Rd:23: Escaped LaTeX specials: \_
checkRd: (-1) igmoExon.Rd:28: Escaped LaTeX specials: \_
checkRd: (-1) justmgMOS.Rd:41: Escaped LaTeX specials: \_ \_
checkRd: (-1) justmmgMOS.Rd:41: Escaped LaTeX specials: \_ \_
checkRd: (-1) legend2.Rd:134: Escaped LaTeX specials: \&
checkRd: (-1) mgmos.Rd:25: Escaped LaTeX specials: \_ \_
checkRd: (-1) mgmos.Rd:35: Escaped LaTeX specials: \_
checkRd: (-1) mmgmos.Rd:26: Escaped LaTeX specials: \_ \_
checkRd: (-1) mmgmos.Rd:37: Escaped LaTeX specials: \_
checkRd: (-1) mmgmos.Rd:38: Escaped LaTeX specials: \_
checkRd: (-1) pumaFull.Rd:23: Escaped LaTeX specials: \_ \_
checkRd: (-1) pumaFull.Rd:24: Escaped LaTeX specials: \_
checkRd: (-1) pumaFull.Rd:25: Escaped LaTeX specials: \_ \_ \_
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
puma-package     35.458  0.277  35.737
pumaDE           22.225  0.151  22.376
pumaComb         12.724  0.077  12.801
pumaCombImproved  9.881  0.106   9.987
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 5 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/puma.Rcheck/00check.log’
for details.

Installation output

puma.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL puma
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘puma’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c PMmultimgmos.c -o PMmultimgmos.o
In file included from PMmultimgmos.c:149:
o8comm.h: In function ‘pmcalparameters’:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable ‘iterma’ [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable ‘nstep’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable ‘nonlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable ‘nlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable ‘n’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c cregistration.c -o cregistration.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c donlp2.c -o donlp2.o
donlp2.c: In function ‘o8st’:
donlp2.c:471:33: warning: variable ‘infiny’ set but not used [-Wunused-but-set-variable]
  471 |     static DDOUBLE   tol1,term, infiny;
      |                                 ^~~~~~
donlp2.c: At top level:
donlp2.c:2034:1: warning: "/*" within comment [-Wcomment]
 2034 | /* **************************************************************************** */
      |  
donlp2.c: In function ‘o8opti’:
donlp2.c:2707:1: warning: "/*" within comment [-Wcomment]
 2707 | /* inactive
      |  
donlp2.c:2079:44: warning: variable ‘iumin’ set but not used [-Wunused-but-set-variable]
 2079 |     static DDOUBLE   delsig,delx,sum,term, iumin;
      |                                            ^~~~~
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c gme.c -o gme.o
gme.c: In function ‘gme_calparameters’:
gme.c:266:16: warning: variable ‘fstart’ set but not used [-Wunused-but-set-variable]
  266 |         double fstart;
      |                ^~~~~~
In file included from gme.c:577:
o8comm.h: In function ‘user_init_size_gme’:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:34: warning: unused variable ‘fx’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                  ^~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
In file included from gme.c:663:
o8cons.h: In function ‘solchk_gme’:
o8cons.h:11:5: warning: unused variable ‘tp4’ [-Wunused-variable]
   11 | tp3,tp4;
      |     ^~~
o8cons.h:11:1: warning: unused variable ‘tp3’ [-Wunused-variable]
   11 | tp3,tp4;
      | ^~~
o8cons.h:10:21: warning: unused variable ‘tp2’ [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |                     ^~~
o8cons.h:10:17: warning: unused variable ‘tp1’ [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |                 ^~~
o8cons.h:10:13: warning: unused variable ‘tm1’ [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |             ^~~
o8cons.h:10:9: warning: unused variable ‘tm2’ [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |         ^~~
o8cons.h:10:5: warning: unused variable ‘tm3’ [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |     ^~~
o8cons.h:10:1: warning: unused variable ‘tm4’ [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      | ^~~
o8cons.h:9:22: warning: unused variable ‘tm5’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |                      ^~~
o8cons.h:9:18: warning: unused variable ‘tm6’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |                  ^~~
o8cons.h:9:14: warning: unused variable ‘tm7’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |              ^~~
o8cons.h:9:10: warning: unused variable ‘tm8’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |          ^~~
o8cons.h:9:6: warning: unused variable ‘tm9’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |      ^~~
o8cons.h:9:1: warning: unused variable ‘tm10’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      | ^~~~
o8cons.h:8:5: warning: unused variable ‘tm12’ [-Wunused-variable]
    8 | c45,tm12,
      |     ^~~~
o8cons.h:8:1: warning: unused variable ‘c45’ [-Wunused-variable]
    8 | c45,tm12,
      | ^~~
o8cons.h:7:22: warning: unused variable ‘p9’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                      ^~
o8cons.h:7:19: warning: unused variable ‘p8’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                   ^~
o8cons.h:7:16: warning: unused variable ‘p7’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                ^~
o8cons.h:7:13: warning: unused variable ‘p5’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |             ^~
o8cons.h:7:10: warning: unused variable ‘p4’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |          ^~
o8cons.h:7:7: warning: unused variable ‘p2’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |       ^~
o8cons.h:7:1: warning: unused variable ‘onep5’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      | ^~~~~
o8cons.h:6:20: warning: unused variable ‘onep3’ [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |                    ^~~~~
o8cons.h:6:13: warning: unused variable ‘twop11’ [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |             ^~~~~~
o8cons.h:6:7: warning: unused variable ‘twop4’ [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |       ^~~~~
o8cons.h:6:1: warning: unused variable ‘twom2’ [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      | ^~~~~
o8cons.h:5:10: warning: unused variable ‘seven’ [-Wunused-variable]
    5 | five,six,seven,
      |          ^~~~~
o8cons.h:5:6: warning: unused variable ‘six’ [-Wunused-variable]
    5 | five,six,seven,
      |      ^~~
o8cons.h:5:1: warning: unused variable ‘five’ [-Wunused-variable]
    5 | five,six,seven,
      | ^~~~
o8cons.h:4:41: warning: unused variable ‘four’ [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                                         ^~~~
o8cons.h:4:35: warning: unused variable ‘three’ [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                                   ^~~~~
o8cons.h:4:31: warning: unused variable ‘two’ [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                               ^~~
o8cons.h:4:27: warning: unused variable ‘one’ [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                           ^~~
o8cons.h:4:22: warning: unused variable ‘zero’ [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                      ^~~~
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c ipplr_c.c -o ipplr_c.o
ipplr_c.c: In function ‘workout0’:
ipplr_c.c:255:132: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  255 |                    while((fmaxn_ipplr(diff_mu1,in_param.conds)>in_param.eps)||(fmaxn_ipplr(diff_lamda,in_param.conds)>in_param.eps)&& (n<2000))
      |                                                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from ipplr_c.c:150:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable ‘iterma’ [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable ‘nstep’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable ‘nonlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable ‘nlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable ‘n’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
ipplr_c.c:209:20: warning: ‘tempx’ may be used uninitialized [-Wmaybe-uninitialized]
  209 |                 if (tempx<=1.0e-3)
      |                    ^
ipplr_c.c:159:21: note: ‘tempx’ was declared here
  159 |         double temp,tempx,alpha1,beta1,fopt,foptold,Fx1,Fx2;
      |                     ^~~~~
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c multimgmos.c -o multimgmos.o
In file included from multimgmos.c:156:
o8comm.h: In function ‘calparameters’:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable ‘iterma’ [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable ‘nstep’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable ‘nonlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable ‘nlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable ‘n’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
multimgmos.c: In function ‘ef_mmgmos’:
multimgmos.c:771:16: warning: variable ‘alphaii’ set but not used [-Wunused-but-set-variable]
  771 |         double alphaii[MAX_NUM_COND]={0.0}, c, d_mmgmos, t1, t2;
      |                ^~~~~~~
multimgmos.c: In function ‘egradf_mmgmos’:
multimgmos.c:893:101: warning: missing braces around initializer [-Wmissing-braces]
  893 |         double alphaii[MAX_NUM_COND]={0.0}, s1[MAX_NUM_COND]={0.0}, s2[MAX_NUM_PROBE][MAX_NUM_COND]={0.0}, c, d_mmgmos, t1, s3, s4;
      |                                                                                                     ^
      |                                                                                                      {  }
multimgmos.c:893:16: warning: variable ‘alphaii’ set but not used [-Wunused-but-set-variable]
  893 |         double alphaii[MAX_NUM_COND]={0.0}, s1[MAX_NUM_COND]={0.0}, s2[MAX_NUM_PROBE][MAX_NUM_COND]={0.0}, c, d_mmgmos, t1, s3, s4;
      |                ^~~~~~~
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c newx.c -o newx.o
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c pplr_c.c -o pplr_c.o
pplr_c.c: In function ‘workout_comb1’:
pplr_c.c:185:68: warning: unused variable ‘x_temp’ [-Wunused-variable]
  185 |         double exp_c[MAX_NUM_REPLICATE], var_c[MAX_NUM_REPLICATE], x_temp[MAX_NUM_COND];
      |                                                                    ^~~~~~
In file included from pplr_c.c:181:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable ‘iterma’ [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable ‘nstep’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable ‘nonlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable ‘nlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable ‘n’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
pplr_c.c:242:20: warning: ‘tempx’ may be used uninitialized [-Wmaybe-uninitialized]
  242 |                 if (tempx<=1.0e-3)
      |                    ^
pplr_c.c:186:39: note: ‘tempx’ was declared here
  186 |         double v[MAX_NUM_COND], temp, tempx, foptold, fopt, lamda10[MAX_NUM_COND];
      |                                       ^~~~~
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c pumaclust_c.c -o pumaclust_c.o
In file included from pumaclust_c.c:162:
o8comm.h: In function ‘workout’:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable ‘iterma’ [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable ‘nstep’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable ‘nonlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable ‘nlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable ‘n’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c pumaclustii_c.c -o pumaclustii_c.o
pumaclustii_c.c: In function ‘workout_pumaclustii’:
pumaclustii_c.c:255:49: warning: variable ‘temp2’ set but not used [-Wunused-but-set-variable]
  255 |         double  *exprs=NULL, *vars=NULL, temp, *temp2, temp3, **t3=NULL, *t4=NULL;
      |                                                 ^~~~~
In file included from pumaclustii_c.c:248:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable ‘iterma’ [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:34: warning: unused variable ‘fx’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                  ^~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                 ^~~~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                            ^~~~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable ‘nstep’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:29: warning: unused variable ‘nonlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                             ^~~~~~
o8fuco.h:7:24: warning: unused variable ‘nlin’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                        ^~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:7:14: warning: unused variable ‘n’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |              ^
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
pumaclustii_c.c:695:41: warning: ‘K_nz_t’ may be used uninitialized [-Wmaybe-uninitialized]
  695 |                         in_param.K_best = K_nz_t;
      |                         ~~~~~~~~~~~~~~~~^~~~~~~~
pumaclustii_c.c:257:19: note: ‘K_nz_t’ was declared here
  257 |         int K_nz, K_nz_t, n_hat, iit;
      |                   ^~~~~~
pumaclustii_c.c:692:20: warning: ‘F_t’ may be used uninitialized [-Wmaybe-uninitialized]
  692 |                 if (F_t>=F_max)
      |                    ^
pumaclustii_c.c:258:46: note: ‘F_t’ was declared here
  258 |         double F_max, F0, F, Ft0, Ft, max_A, F_t;
      |                                              ^~~
gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c user_eval.c -o user_eval.o
In file included from user_eval.c:67:
o8cons.h: In function ‘user_eval’:
o8cons.h:11:5: warning: unused variable ‘tp4’ [-Wunused-variable]
   11 | tp3,tp4;
      |     ^~~
o8cons.h:11:1: warning: unused variable ‘tp3’ [-Wunused-variable]
   11 | tp3,tp4;
      | ^~~
o8cons.h:10:21: warning: unused variable ‘tp2’ [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |                     ^~~
o8cons.h:10:17: warning: unused variable ‘tp1’ [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |                 ^~~
o8cons.h:10:5: warning: unused variable ‘tm3’ [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      |     ^~~
o8cons.h:10:1: warning: unused variable ‘tm4’ [-Wunused-variable]
   10 | tm4,tm3,tm2,tm1,tp1,tp2,
      | ^~~
o8cons.h:9:22: warning: unused variable ‘tm5’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |                      ^~~
o8cons.h:9:18: warning: unused variable ‘tm6’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |                  ^~~
o8cons.h:9:14: warning: unused variable ‘tm7’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |              ^~~
o8cons.h:9:10: warning: unused variable ‘tm8’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |          ^~~
o8cons.h:9:6: warning: unused variable ‘tm9’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      |      ^~~
o8cons.h:9:1: warning: unused variable ‘tm10’ [-Wunused-variable]
    9 | tm10,tm9,tm8,tm7,tm6,tm5,
      | ^~~~
o8cons.h:8:5: warning: unused variable ‘tm12’ [-Wunused-variable]
    8 | c45,tm12,
      |     ^~~~
o8cons.h:7:22: warning: unused variable ‘p9’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                      ^~
o8cons.h:7:19: warning: unused variable ‘p8’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                   ^~
o8cons.h:7:16: warning: unused variable ‘p7’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |                ^~
o8cons.h:7:13: warning: unused variable ‘p5’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |             ^~
o8cons.h:7:7: warning: unused variable ‘p2’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      |       ^~
o8cons.h:7:1: warning: unused variable ‘onep5’ [-Wunused-variable]
    7 | onep5,p2,p4,p5,p7,p8,p9,
      | ^~~~~
o8cons.h:6:20: warning: unused variable ‘onep3’ [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |                    ^~~~~
o8cons.h:6:13: warning: unused variable ‘twop11’ [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |             ^~~~~~
o8cons.h:6:7: warning: unused variable ‘twop4’ [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      |       ^~~~~
o8cons.h:6:1: warning: unused variable ‘twom2’ [-Wunused-variable]
    6 | twom2,twop4,twop11,onep3,
      | ^~~~~
o8cons.h:5:6: warning: unused variable ‘six’ [-Wunused-variable]
    5 | five,six,seven,
      |      ^~~
o8cons.h:5:1: warning: unused variable ‘five’ [-Wunused-variable]
    5 | five,six,seven,
      | ^~~~
o8cons.h:4:31: warning: unused variable ‘two’ [-Wunused-variable]
    4 | extern const DDOUBLE zero,one,two,three,four,
      |                               ^~~
In file included from user_eval.c:65:
o8fint.h:23:25: warning: unused variable ‘corr’ [-Wunused-variable]
   23 | X LLOGICAL   bloc,valid,corr;
      |                         ^~~~
o8fint.h:23:14: warning: unused variable ‘bloc’ [-Wunused-variable]
   23 | X LLOGICAL   bloc,valid,corr;
      |              ^~~~
In file included from user_eval.c:64:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
   60 | X DDOUBLE    *xst;
      |               ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
   58 | X IINTEGER   nreset;
      |              ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                       ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |                    ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
   56 | X DDOUBLE    *low,*up,big;
      |               ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |                   ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
   54 | X DDOUBLE    *ug,*og;
      |               ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |                    ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
   52 | X FILE      *prou,*meu;
      |              ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                                 ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                          ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |                   ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
   50 | X IINTEGER   clow,lastdw,lastup,lastch;
      |              ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
   49 | X DDOUBLE    level;
      |              ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |                     ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
   47 | X DDOUBLE    delta1,stmaxl;
      |              ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                                  ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                            ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                      ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                                ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                          ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |                    ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
   46 | X DDOUBLE    alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
      |              ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                        ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                                 ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                           ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |                    ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
   44 |             scfmax,updmy0,tauqp,taufac,taumax;
      |             ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                              ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                         ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                     ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                                ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                            ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |                     ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
   43 | X DDOUBLE    smalld,smallw,rho,rho1,eta,epsx,c1d,
      |              ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                             ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                         ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                                    ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                             ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                       ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |                  ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
   42 | X DDOUBLE    del,del0,del01,delmin,tau0,tau,ny;
      |              ^~~
o8comm.h:41:14: warning: unused variable ‘iterma’ [-Wunused-variable]
   41 | X IINTEGER   iterma;
      |              ^~~~~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                                ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                        ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |                  ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
   39 |             *yu,*slack,infeas,*work;
      |              ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                        ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |                    ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
   38 |             *resst,scf,scf0,
      |              ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
   37 |             *res0,*res1,
      |                    ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
   37 |             *res0,*res1,
      |              ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                     ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |                 ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
   36 |             *w,*w1,*res,
      |              ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |                  ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
   35 | X DDOUBLE    *u,*u0,
      |               ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                                ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |                        ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
   33 |             *o8bind0, *aalist,*clist;
      |              ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                              ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |                       ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
   32 | X IINTEGER   *violis,*alist,*o8bind,
      |               ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                      ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                                ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                        ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                  ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
   30 | X DDOUBLE    **a,scalm,scalm2,*diag0,matsc;
      |                ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
   26 |             *colle;
      |              ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
   25 |             *cscal,
      |              ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                           ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                    ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
   24 | X DDOUBLE    **qr,*betaq,*diag,
      |                ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                                  ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                            ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |                     ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
   23 | X IINTEGER   *perm,*perm1,*colno,rank;
      |               ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |                     ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
   21 |             **gres,*gresn;
      |               ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                                      ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                               ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                          ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |                     ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
   20 | X DDOUBLE    *gradf,gfn,*qgf,*gphi0,*gphi1,
      |               ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                        ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |                  ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
   18 |             *dd,*difx,*resmin;
      |              ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                          ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                       ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                                 ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                             ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |                         ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
   17 | X DDOUBLE    *donlp2_x,*x0,*x1,*xmin,*d,*d0,
      |               ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                       ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                                ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                         ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |                  ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
   16 | X DDOUBLE    sig,sigmin,dirder,cosphi,upsim;
      |              ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                                      ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                               ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                         ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                                    ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                             ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                       ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                                  ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                              ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |                  ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
   15 |             fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
      |             ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                         ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                     ^~~
o8comm.h:14:34: warning: unused variable ‘fx’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                                  ^~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                           ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                      ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |                 ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
   14 |             phi,phi0,phi1,phimin,fx,fx0,fx1,
      |             ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                        ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |                  ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
   13 |             psi1,psist,psimin,
      |             ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                          ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                                      ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                               ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                         ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |                   ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
   12 | X DDOUBLE    upsi,upsi0,upsi1,upsist,psi,psi0,
      |              ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |                     ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
   10 | X IINTEGER   itstep,phase;
      |              ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
    9 | X DDOUBLE    **accinf;
      |                ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
    8 | X RREAL      optite;
      |              ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
    7 | X RREAL      runtim;
      |              ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
   33 | X LLOGICAL *cfuerr;
      |             ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
   31 | X LLOGICAL *gconst;
      |             ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
   29 | X IINTEGER **gunit;
      |              ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
   27 | X IINTEGER *nonlinlist;
      |             ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |               ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
   25 | X IINTEGER nh,ng;
      |            ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |                      ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
   20 | X LLOGICAL   ffuerr,*confuerr;
      |              ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                                     ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                               ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                       ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |                  ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
   18 | X IINTEGER   icf,icgf,cfincr,*cres,*cgres;
      |              ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                                        ^~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                          ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |                    ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
   16 | X LLOGICAL   ident,eqres,silent,analyt,cold;
      |              ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                     ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                                 ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                             ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                         ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |                     ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
   15 | X LLOGICAL   intakt,te0,te1,te2,te3,singul;
      |              ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
   13 | X DDOUBLE    epsdif;
      |              ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
   11 | X char      name[41];
      |             ^~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |                     ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
    9 | X DDOUBLE    epsmac,tolmac,deldif;
      |              ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                                    ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                            ^~~~~~
o8fuco.h:7:37: warning: unused variable ‘nstep’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                                     ^~~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                   ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
    7 | X IINTEGER   n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
      |                ^~
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                          ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |                    ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
    5 | X LLOGICAL   *val,*llow,*lup;
      |               ^~~
gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o puma.so PMmultimgmos.o cregistration.o donlp2.o gme.o ipplr_c.o multimgmos.o newx.o pplr_c.o pumaclust_c.o pumaclustii_c.o user_eval.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-puma/00new/puma/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (puma)

Tests output

Example timings

puma.Rcheck/puma-Ex.timings

name	user	system	elapsed
DEResult-class	0.001	0.000	0.001
PMmmgmos	0	0	0
bcomb	0.000	0.000	0.001
calcAUC	0	0	0
calculateFC	0	0	0
calculateLimma	0	0	0
calculateTtest	0	0	0
clusterNormE	0	0	0
clusterNormVar	0	0	0
createContrastMatrix	0.015	0.000	0.016
createDesignMatrix	0.021	0.000	0.021
erfc	0	0	0
exprReslt-class	0	0	0
gmhta	0	0	0
gmoExon	0	0	0
hcomb	0	0	0
igmoExon	0.001	0.001	0.000
legend2	0	0	0
license.puma	0.001	0.000	0.001
matrixDistance	0	0	0
mgmos	0	0	0
mmgmos	0	0	0
normalisation.gs	0.001	0.000	0.000
numFP	0	0	0
numOfFactorsToUse	0.001	0.000	0.000
numTP	0	0	0
orig_pplr	0.001	0.000	0.000
plot-methods	4.619	0.221	4.840
plotErrorBars	0.304	0.005	0.309
plotHistTwoClasses	0.007	0.000	0.007
plotROC	0.000	0.000	0.001
pplr	0.106	0.001	0.106
puma-package	35.458	0.277	35.737
pumaClustii	2.119	0.004	2.125
pumaComb	12.724	0.077	12.801
pumaCombImproved	9.881	0.106	9.987
pumaDE	22.225	0.151	22.376
pumaFull	0	0	0
pumaNormalize	0.310	0.011	0.321
pumaPCA	4.118	0.140	4.258
pumaclust	2.871	0.003	2.874
removeUninformativeFactors	0.024	0.000	0.024