Multiple platform build/check report for BioC 3.20 - INSTALL results for plotgardener on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4744
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4487
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4515
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4467
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for plotgardener on kjohnson1

To the developers/maintainers of the plotgardener package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/plotgardener.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: plotgardener

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL plotgardener

StartedAt: 2024-12-19 16:19:10 -0500 (Thu, 19 Dec 2024)

EndedAt: 2024-12-19 16:20:07 -0500 (Thu, 19 Dec 2024)

EllapsedTime: 56.3 seconds

RetCode: 0

Status: OK

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL plotgardener
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘plotgardener’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c checkRow.cpp -o checkRow.o
checkRow.cpp:19:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
      if (((v[rowCol] == j) &
          ~^~~~~~~~~~~~~~~~~~
                            &&
checkRow.cpp:19:12: note: cast one or both operands to int to silence this warning
checkRow.cpp:20:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
          (((start >= v[0]) & (start <= v[1])) |
          ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
checkRow.cpp:20:12: note: cast one or both operands to int to silence this warning
checkRow.cpp:22:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
          ((start <= v[0]) & (stop >= v[1]))))){
          ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                           &&
checkRow.cpp:22:12: note: cast one or both operands to int to silence this warning
checkRow.cpp:20:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
          (((start >= v[0]) & (start <= v[1])) |
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                               ||
checkRow.cpp:20:12: note: cast one or both operands to int to silence this warning
checkRow.cpp:21:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
          ((stop >= v[0]) & (stop <= v[1])) |
          ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                          &&
checkRow.cpp:21:12: note: cast one or both operands to int to silence this warning
checkRow.cpp:20:13: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
          (((start >= v[0]) & (start <= v[1])) |
           ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                            &&
checkRow.cpp:20:13: note: cast one or both operands to int to silence this warning
6 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c rebinBigwig.cpp -o rebinBigwig.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o plotgardener.so RcppExports.o checkRow.o rebinBigwig.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-plotgardener/00new/plotgardener/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plotgardener)