Multiple platform build/check report for BioC 3.22 - BUILD results for periodicDNA on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4879
merida1	macOS 12.7.6 Monterey	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4670
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"	4604
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4669
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for periodicDNA on taishan

To the developers/maintainers of the periodicDNA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/periodicDNA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: periodicDNA

Version: 1.20.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data periodicDNA

StartedAt: 2025-12-09 05:05:03 -0000 (Tue, 09 Dec 2025)

EndedAt: 2025-12-09 05:07:35 -0000 (Tue, 09 Dec 2025)

EllapsedTime: 152.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data periodicDNA
###
##############################################################################
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* checking for file ‘periodicDNA/DESCRIPTION’ ... OK
* preparing ‘periodicDNA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘periodicDNA.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Introduction to periodicDNA", and the latter is "periodicDNA". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
Could not fetch https://raw.githubusercontent.com/js2264/periodicDNA/master/man/figures/TT-10bp-periodicity_tissue-spe-TSSs.png
HttpExceptionRequest Request {
  host                 = "raw.githubusercontent.com"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/js2264/periodicDNA/master/man/figures/TT-10bp-periodicity_tissue-spe-TSSs.png"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
  proxySecureMode      = ProxySecureWithConnect
}
 ResponseTimeout
Error: processing vignette 'periodicDNA.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘periodicDNA.Rmd’

SUMMARY: processing the following file failed:
  ‘periodicDNA.Rmd’

Error: Vignette re-building failed.
Execution halted