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This page was generated on 2024-06-11 15:40 -0400 (Tue, 11 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4679
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4414
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4441
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1484/2239HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
paxtoolsr 1.39.0  (landing page)
Augustin Luna
Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024)
git_url: https://git.bioconductor.org/packages/paxtoolsr
git_branch: devel
git_last_commit: 444550a
git_last_commit_date: 2024-04-30 10:39:35 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    ERROR    OK  

BUILD results for paxtoolsr on palomino4

To the developers/maintainers of the paxtoolsr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/paxtoolsr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: paxtoolsr
Version: 1.39.0
Command: chmod a+r paxtoolsr -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data paxtoolsr
StartedAt: 2024-06-09 21:06:36 -0400 (Sun, 09 Jun 2024)
EndedAt: 2024-06-09 21:07:23 -0400 (Sun, 09 Jun 2024)
EllapsedTime: 47.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r paxtoolsr -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data paxtoolsr
###
##############################################################################
##############################################################################


* checking for file 'paxtoolsr/DESCRIPTION' ... OK
* preparing 'paxtoolsr':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'using_paxtoolsr.Rmd' using rmarkdown
2024-06-09 21:07:11,578 1299 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSif: not blacklisting ubiquitous molecules (no blacklist.txt found)
2024-06-09 21:07:12,658 2379 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSifnx: not blacklisting ubiquitous molecules (no blacklist.txt found)

Quitting from lines 169-171 [searchResultsExampleVerbose] (using_paxtoolsr.Rmd)
Error: processing vignette 'using_paxtoolsr.Rmd' failed with diagnostics:
ERROR: Code: 404 Message: Unknown Error (PC Webservice Error)
--- failed re-building 'using_paxtoolsr.Rmd'

SUMMARY: processing the following file failed:
  'using_paxtoolsr.Rmd'

Error: Vignette re-building failed.
Execution halted