##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
###
##############################################################################
##############################################################################


* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
Channels:
 - anaconda
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /media/volume/teran2_disk/biocbuild/.cache/R/basilisk/1.18.0/pareg/1.10.0/pareg

  added / updated specs:
    - python=3.10.14


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _libgcc_mutex-0.1          |             main           3 KB  anaconda
    _openmp_mutex-5.1          |            1_gnu          20 KB  anaconda
    bzip2-1.0.8                |       h5eee18b_6         418 KB  anaconda
    ca-certificates-2024.9.24  |       h06a4308_0         137 KB  anaconda
    ld_impl_linux-64-2.40      |       h12ee557_0         706 KB  anaconda
    libffi-3.4.4               |       h6a678d5_1         150 KB  anaconda
    libgcc-ng-11.2.0           |       h1234567_1         8.5 MB  anaconda
    libgomp-11.2.0             |       h1234567_1         560 KB  anaconda
    libstdcxx-ng-11.2.0        |       h1234567_1         6.1 MB  anaconda
    libuuid-1.41.5             |       h5eee18b_0          29 KB  anaconda
    ncurses-6.4                |       h6a678d5_0         1.1 MB  anaconda
    openssl-3.0.15             |       h5eee18b_0         5.2 MB  anaconda
    pip-24.2                   |  py310h06a4308_0         2.2 MB  anaconda
    python-3.10.14             |       h955ad1f_1        27.7 MB  anaconda
    readline-8.2               |       h5eee18b_0         457 KB  anaconda
    setuptools-75.1.0          |  py310h06a4308_0         1.7 MB  anaconda
    sqlite-3.45.3              |       h5eee18b_0         1.6 MB  anaconda
    tk-8.6.14                  |       h39e8969_0         3.4 MB  anaconda
    tzdata-2024b               |       h04d1e81_0         121 KB  anaconda
    wheel-0.44.0               |  py310h06a4308_0         103 KB  anaconda
    xz-5.4.6                   |       h5eee18b_1         700 KB  anaconda
    zlib-1.2.13                |       h5eee18b_1         124 KB  anaconda
    ------------------------------------------------------------
                                           Total:        61.1 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      anaconda/linux-64::_libgcc_mutex-0.1-main 
  _openmp_mutex      anaconda/linux-64::_openmp_mutex-5.1-1_gnu 
  bzip2              anaconda/linux-64::bzip2-1.0.8-h5eee18b_6 
  ca-certificates    anaconda/linux-64::ca-certificates-2024.9.24-h06a4308_0 
  ld_impl_linux-64   anaconda/linux-64::ld_impl_linux-64-2.40-h12ee557_0 
  libffi             anaconda/linux-64::libffi-3.4.4-h6a678d5_1 
  libgcc-ng          anaconda/linux-64::libgcc-ng-11.2.0-h1234567_1 
  libgomp            anaconda/linux-64::libgomp-11.2.0-h1234567_1 
  libstdcxx-ng       anaconda/linux-64::libstdcxx-ng-11.2.0-h1234567_1 
  libuuid            anaconda/linux-64::libuuid-1.41.5-h5eee18b_0 
  ncurses            anaconda/linux-64::ncurses-6.4-h6a678d5_0 
  openssl            anaconda/linux-64::openssl-3.0.15-h5eee18b_0 
  pip                anaconda/linux-64::pip-24.2-py310h06a4308_0 
  python             anaconda/linux-64::python-3.10.14-h955ad1f_1 
  readline           anaconda/linux-64::readline-8.2-h5eee18b_0 
  setuptools         anaconda/linux-64::setuptools-75.1.0-py310h06a4308_0 
  sqlite             anaconda/linux-64::sqlite-3.45.3-h5eee18b_0 
  tk                 anaconda/linux-64::tk-8.6.14-h39e8969_0 
  tzdata             anaconda/noarch::tzdata-2024b-h04d1e81_0 
  wheel              anaconda/linux-64::wheel-0.44.0-py310h06a4308_0 
  xz                 anaconda/linux-64::xz-5.4.6-h5eee18b_1 
  zlib               anaconda/linux-64::zlib-1.2.13-h5eee18b_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - anaconda
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

# All requested packages already installed.

Channels:
 - anaconda
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - nothing provides openssl >=1.1.1,<1.1.2.0a0 needed by python-3.7.1-h0371630_3

Could not solve for environment specs
The following packages are incompatible
├─ python 3.10.14**  is installable and it requires
│  └─ openssl >=3.0.13,<4.0a0 , which can be installed;
└─ tensorflow 2.10.0**  is not installable because there are no viable options
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base [2.10.0 eigen_py37h1969d1f_0|2.10.0 gpu_py37h6559e04_0|2.10.0 mkl_py37hb9daa73_0], which requires
   │     └─ python >=3.7,<3.8.0a0  but there are no viable options
   │        ├─ python [3.7.0|3.7.1|...|3.7.9] conflicts with any installable versions previously reported;
   │        └─ python 3.7.1 would require
   │           └─ openssl >=1.1.1,<1.1.2.0a0 , which does not exist (perhaps a missing channel);
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base [2.10.0 eigen_py310h1969d1f_0|2.10.0 gpu_py310h6559e04_0|2.10.0 mkl_py310hb9daa73_0], which requires
   │     └─ openssl >=1.1.1q,<1.1.2a , which conflicts with any installable versions previously reported;
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base [2.10.0 eigen_py38h1969d1f_0|2.10.0 gpu_py38h6559e04_0|2.10.0 mkl_py38hb9daa73_0], which requires
   │     └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported;
   └─ tensorflow 2.10.0 would require
      └─ tensorflow-base [2.10.0 eigen_py39h1969d1f_0|2.10.0 gpu_py39h6559e04_0|2.10.0 mkl_py39hb9daa73_0], which requires
         └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported.


Quitting from lines 145-150 [unnamed-chunk-9] (pareg.Rmd)
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘pareg.Rmd’

--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
--- finished re-building ‘pathway_similarities.Rmd’

SUMMARY: processing the following file failed:
  ‘pareg.Rmd’

Error: Vignette re-building failed.
Execution halted