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This page was generated on 2025-10-16 11:41 -0400 (Thu, 16 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.6 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.7.5 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1466/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
octad 1.10.0  (landing page)
E. Chekalin
Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025)
git_url: https://git.bioconductor.org/packages/octad
git_branch: RELEASE_3_21
git_last_commit: 5d6122f
git_last_commit_date: 2025-04-15 12:59:22 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
merida1macOS 12.7.6 Monterey / x86_64  OK    OK    ERROR    OK  
kjohnson1macOS 13.7.5 Ventura / arm64  OK    OK    ERROR    OK  
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for octad on kunpeng2

To the developers/maintainers of the octad package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/octad.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: octad
Version: 1.10.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data octad
StartedAt: 2025-10-14 03:07:54 -0000 (Tue, 14 Oct 2025)
EndedAt: 2025-10-14 03:13:45 -0000 (Tue, 14 Oct 2025)
EllapsedTime: 350.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data octad
###
##############################################################################
##############################################################################


* checking for file ‘octad/DESCRIPTION’ ... OK
* preparing ‘octad’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘octad.Rmd’ using rmarkdown

Quitting from octad.Rmd:99-103 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `pm[[2]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─octad::topLineEval(topline = "HEPG2", mysRGES = sRGES_example)
 2. │ ├─plotly::ggplotly(p, tooltip = c("text", "label")) %>% ...
 3. │ ├─plotly::ggplotly(p, tooltip = c("text", "label"))
 4. │ └─plotly:::ggplotly.ggplot(p, tooltip = c("text", "label"))
 5. │   └─plotly::gg2list(...)
 6. └─plotly::layout(., margin = list(l = 15))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'octad.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘octad.Rmd’

SUMMARY: processing the following file failed:
  ‘octad.Rmd’

Error: Vignette re-building failed.
Execution halted