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This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4677
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4416
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4444
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4393
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1408/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nullranges 1.11.0  (landing page)
Michael Love
Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/nullranges
git_branch: devel
git_last_commit: c161668
git_last_commit_date: 2024-04-30 11:38:00 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino6Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

BUILD results for nullranges on palomino6

To the developers/maintainers of the nullranges package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: nullranges
Version: 1.11.0
Command: chmod a+r nullranges -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data nullranges
StartedAt: 2024-07-15 19:37:04 -0400 (Mon, 15 Jul 2024)
EndedAt: 2024-07-15 19:39:32 -0400 (Mon, 15 Jul 2024)
EllapsedTime: 147.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r nullranges -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data nullranges
###
##############################################################################
##############################################################################


* checking for file 'nullranges/DESCRIPTION' ... OK
* preparing 'nullranges':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'bootRanges.Rmd' using rmarkdown

Quitting from lines 168-183 [excluderanges] (bootRanges.Rmd)
Error: processing vignette 'bootRanges.Rmd' failed with diagnostics:
failed to load resource
  name: AH107305
  title: hg38.Kundaje.GRCh38_unified_Excludable
  reason: unknown input format
--- failed re-building 'bootRanges.Rmd'

--- re-building 'matchRanges.Rmd' using rmarkdown
--- finished re-building 'matchRanges.Rmd'

--- re-building 'matching_ginteractions.Rmd' using rmarkdown
--- finished re-building 'matching_ginteractions.Rmd'

--- re-building 'matching_granges.Rmd' using rmarkdown
--- finished re-building 'matching_granges.Rmd'

--- re-building 'matching_pool_set.Rmd' using rmarkdown
--- finished re-building 'matching_pool_set.Rmd'

--- re-building 'nullranges.Rmd' using rmarkdown
--- finished re-building 'nullranges.Rmd'

SUMMARY: processing the following file failed:
  'bootRanges.Rmd'

Error: Vignette re-building failed.
Execution halted