Multiple platform build/check report for BioC 3.20 - INSTALL results for netresponse on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4744
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4487
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4515
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4467
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for netresponse on palomino8

To the developers/maintainers of the netresponse package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/netresponse.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: netresponse

Version: 1.66.0

Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL netresponse

StartedAt: 2024-12-19 16:55:17 -0500 (Thu, 19 Dec 2024)

EndedAt: 2024-12-19 16:56:31 -0500 (Thu, 19 Dec 2024)

EllapsedTime: 73.2 seconds

RetCode: 0

Status: OK

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL netresponse
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'netresponse' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264:15: warning: unused variable 'prior_fields' [-Wunused-variable]
  264 |   const char *prior_fields[]={"Mumu","S2mu",
      |               ^~~~~~~~~~~~
netresponse.c: In function 'mLogLambda':
netresponse.c:713:3: warning: 'Mumu' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:11: note: 'Mumu' was declared here
  655 |   double *Mumu, *S2mu, *Mubar, *Mutilde,
      |           ^~~~
netresponse.c:713:3: warning: 'S2mu' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:18: note: 'S2mu' was declared here
  655 |   double *Mumu, *S2mu, *Mubar, *Mutilde,
      |                  ^~~~
netresponse.c:713:3: warning: 'Mubar' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:25: note: 'Mubar' was declared here
  655 |   double *Mumu, *S2mu, *Mubar, *Mutilde,
      |                         ^~~~~
netresponse.c:713:3: warning: 'Mutilde' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:33: note: 'Mutilde' was declared here
  655 |   double *Mumu, *S2mu, *Mubar, *Mutilde,
      |                                 ^~~~~~~
netresponse.c:713:3: warning: 'AlphaKsi' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:6: note: 'AlphaKsi' was declared here
  656 |     *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
      |      ^~~~~~~~
netresponse.c:713:3: warning: 'BetaKsi' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:17: note: 'BetaKsi' was declared here
  656 |     *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
      |                 ^~~~~~~
netresponse.c:713:3: warning: 'KsiAlpha' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:27: note: 'KsiAlpha' was declared here
  656 |     *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
      |                           ^~~~~~~~
netresponse.c:713:3: warning: 'KsiBeta' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:38: note: 'KsiBeta' was declared here
  656 |     *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
      |                                      ^~~~~~~
netresponse.c:713:3: warning: 'U_p' may be used uninitialized [-Wmaybe-uninitialized]
  713 |   vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  714 |                     AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  715 |                     post_gamma, log_lambda, prior_alpha,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  716 |                     U_p, U_hat,
      |                     ~~~~~~~~~~~
  717 |                     datalen, dim1, dim2, data1, data2,
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                     Ns, ncentroids, implicitnoisevar);
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:48: note: 'U_p' was declared here
  656 |     *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
      |                                                ^~~
gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-netresponse/00new/netresponse/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (netresponse)