Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1316/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
motifcounter 1.30.0 (landing page) Wolfgang Kopp
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | ||||||||||
To the developers/maintainers of the motifcounter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/motifcounter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: motifcounter |
Version: 1.30.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:motifcounter.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings motifcounter_1.30.0.tar.gz |
StartedAt: 2024-11-20 10:06:39 -0000 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 10:11:01 -0000 (Wed, 20 Nov 2024) |
EllapsedTime: 261.5 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: motifcounter.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:motifcounter.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings motifcounter_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/motifcounter.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-unknown-linux-gnu * R was compiled by gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14) GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘motifcounter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘motifcounter’ version ‘1.30.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .zenodo.json These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘motifcounter’ can be installed ... OK * used C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed simulateClumpSizeDist 11.922 0.089 12.03 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’/home/biocbuild/R/R-4.4.1/bin/BATCH: line 60: 1515071 Bus error (core dumped) ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1 ERROR Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 23: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 24: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new()) 25: source_file(path, env = env(env), desc = desc, error_call = error_call) 26: FUN(X[[i]], ...) 27: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call) 28: doTryCatch(return(expr), name, parentenv, handler) 29: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 30: tryCatchList(expr, classes, parentenv, handlers) 31: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 32: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)) 33: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call) 34: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel) 35: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 36: test_check("motifcounter") An irrecoverable exception occurred. R is aborting now ... * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 2 NOTEs See ‘/home/biocbuild/bbs-3.20-bioc/meat/motifcounter.Rcheck/00check.log’ for details.
motifcounter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL motifcounter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘motifcounter’ ... ** using staged installation ** libs using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c Rbackground.c -o Rbackground.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c Rcombinatorial.c -o Rcombinatorial.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c Rcompoundpoisson.c -o Rcompoundpoisson.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c Rminmaxscore.c -o Rminmaxscore.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c Roption.c -o Roption.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c Roverlap.c -o Roverlap.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c Rscore1d.c -o Rscore1d.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c Rsequence.c -o Rsequence.o Rsequence.c: In function 'RscoreHistogram': Rsequence.c:143:21: warning: unused variable 'noscores' [-Wunused-variable] 143 | int mins, maxs, noscores; | ^~~~~~~~ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c Rsimulate.c -o Rsimulate.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c background.c -o background.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c combinatorial.c -o combinatorial.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c compoundpoisson.c -o compoundpoisson.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c markovchain.c -o markovchain.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c markovchain_single.c -o markovchain_single.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c matrix.c -o matrix.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c mdist_register.c -o mdist_register.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c minmaxscore.c -o minmaxscore.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c overlap.c -o overlap.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c score1d.c -o score1d.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c score2d.c -o score2d.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c scorefunctions.c -o scorefunctions.o scorefunctions.c: In function 'getPositionWeights': scorefunctions.c:84:22: warning: unused variable 'cindex' [-Wunused-variable] 84 | int j, i, index, cindex, ds; | ^~~~~~ scorefunctions.c: In function 'hitSequence': scorefunctions.c:119:17: warning: unused variable 'cindex' [-Wunused-variable] 119 | int s, index, cindex; | ^~~~~~ scorefunctions.c: In function 'scoreSequence': scorefunctions.c:159:19: warning: unused variable 'cindex' [-Wunused-variable] 159 | int s, index, cindex; | ^~~~~~ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c sequence.c -o sequence.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fopenmp -DIN_R -fPIC -g -O2 -Wall -c simulate.c -o simulate.o gcc -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o motifcounter.so Rbackground.o Rcombinatorial.o Rcompoundpoisson.o Rminmaxscore.o Roption.o Roverlap.o Rscore1d.o Rsequence.o Rsimulate.o background.o combinatorial.o compoundpoisson.o markovchain.o markovchain_single.o matrix.o mdist_register.o minmaxscore.o overlap.o score1d.o score2d.o scorefunctions.o sequence.o simulate.o -fopenmp -L/home/biocbuild/R/R-4.4.1/lib -lR installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-motifcounter/00new/motifcounter/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (motifcounter)
motifcounter.Rcheck/tests/testthat.Rout.fail
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(motifcounter) > > test_check("motifcounter") *** caught bus error *** address 0xffff00000003, cause 'invalid alignment' Traceback: 1: scoreDist(as.matrix(motif[, 1]), bg) 2: eval(code, test_env) 3: eval(code, test_env) 4: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 5: doTryCatch(return(expr), name, parentenv, handler) 6: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 8: doTryCatch(return(expr), name, parentenv, handler) 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 10: tryCatchList(expr, classes, parentenv, handlers) 11: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 12: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter()) 13: test_that("scoreDists", { alpha = 0.01 motifcounterOptions(alpha) seqfile = system.file("extdata", "seq.fasta", package = "motifcounter") seqs = Biostrings::readDNAStringSet(seqfile) bg = readBackground(seqs, 0) motifname = "x1.tab" motiffile = system.file("extdata", motifname, package = "motifcounter") motif = t(as.matrix(read.table(motiffile))) bg = readBackground(seqs, 2) expect_error(scoreDist(as.matrix(motif[, 1]), bg)) bg = readBackground(seqs, 0) s = round((log(motif[, 1]) - log(bg@station)) * 10) srange = seq(min(s), max(s)) p = rep(0, length(srange)) for (i in 1:length(srange)) { p[i] = sum(bg@station[which(s == srange[i])]) } dp = scoreDist(as.matrix(motif[, 1]), bg) expect_equal(sum(dp[[2]]), 1) expect_equal(length(srange), length(dp[[1]])) expect_equal(srange, round(dp[[1]] * 10)) expect_equal(p, dp[[2]]) for (m in seq(0, 3)) { bg = readBackground(seqs, m) if (m == 0) { sims = scoreDistEmpirical(as.matrix(motif[, 1]), bg, 1, 1000) dp = scoreDist(as.matrix(motif[, 1]), bg) bf = scoreDistBf(as.matrix(motif[, 1]), bg) } else { sims = scoreDistEmpirical(as.matrix(motif[, 1:m]), bg, m, 1000) dp = scoreDist(as.matrix(motif[, 1:m]), bg) bf = scoreDistBf(as.matrix(motif[, 1:m]), bg) } expect_equal(sum(dp[[2]]), 1) expect_equal(bf[[1]], dp[[1]]) expect_equal(bf[[2]], dp[[2]]) expect_equal(sims[[1]], dp[[1]]) expect_equal(sum(sims[[2]][dp[[2]] == 0]), 0) } for (m in seq(1, 3)) { bg = readBackground(seqs, m) dp = scoreDist(motif[, 1:(m + 1)], bg) bf = scoreDistBf(motif[, 1:(m + 1)], bg) sims = scoreDistEmpirical(motif[, 1:(m + 1)], bg, m + 1, 1000) expect_equal(sum(dp[[2]]), 1) expect_equal(bf[[1]], dp[[1]]) expect_equal(bf[[2]], dp[[2]]) expect_equal(sims[[1]], dp[[1]]) expect_equal(sum(sims[[2]][dp[[2]] == 0]), 0) }}) 14: eval(code, test_env) 15: eval(code, test_env) 16: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error) 17: doTryCatch(return(expr), name, parentenv, handler) 18: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) 20: doTryCatch(return(expr), name, parentenv, handler) 21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]]) 22: tryCatchList(expr, classes, parentenv, handlers) 23: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { }) 24: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new()) 25: source_file(path, env = env(env), desc = desc, error_call = error_call) 26: FUN(X[[i]], ...) 27: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call) 28: doTryCatch(return(expr), name, parentenv, handler) 29: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 30: tryCatchList(expr, classes, parentenv, handlers) 31: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 32: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)) 33: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call) 34: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel) 35: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 36: test_check("motifcounter") An irrecoverable exception occurred. R is aborting now ...
motifcounter.Rcheck/motifcounter-Ex.timings
name | user | system | elapsed | |
clumpSizeDist | 0.203 | 0.000 | 0.206 | |
combinatorialDist | 0.340 | 0.012 | 0.352 | |
compoundPoissonDist | 0.225 | 0.004 | 0.230 | |
computeClumpStartProb | 0.158 | 0.000 | 0.159 | |
generateDNAString | 0.101 | 0.000 | 0.102 | |
generateDNAStringSet | 0.147 | 0.004 | 0.151 | |
hitStrand | 0.097 | 0.000 | 0.097 | |
lenSequences | 0.082 | 0.020 | 0.101 | |
markovModel | 0.136 | 0.000 | 0.137 | |
motifAndBackgroundValid | 0.094 | 0.000 | 0.096 | |
motifEnrichment | 3.353 | 0.032 | 3.389 | |
motifHitProfile | 0.095 | 0.000 | 0.095 | |
motifHits | 0.104 | 0.000 | 0.105 | |
motifValid | 0.002 | 0.000 | 0.002 | |
motifcounter-package | 1.193 | 0.012 | 1.206 | |
motifcounterOptions | 0 | 0 | 0 | |
normalizeMotif | 0.002 | 0.000 | 0.002 | |
numMotifHits | 0.710 | 0.000 | 0.712 | |
probOverlapHit | 0.176 | 0.000 | 0.177 | |
readBackground | 0.098 | 0.000 | 0.099 | |
revcompMotif | 0.002 | 0.000 | 0.002 | |
scoreDist | 0.095 | 0.000 | 0.095 | |
scoreDistBf | 0.112 | 0.000 | 0.113 | |
scoreDistEmpirical | 2.744 | 0.024 | 2.772 | |
scoreHistogram | 0.240 | 0.000 | 0.241 | |
scoreHistogramSingleSeq | 0.101 | 0.008 | 0.109 | |
scoreProfile | 0.537 | 0.000 | 0.538 | |
scoreSequence | 0.096 | 0.004 | 0.099 | |
scoreStrand | 0.096 | 0.004 | 0.100 | |
scoreThreshold | 0.098 | 0.005 | 0.104 | |
sigLevel | 0 | 0 | 0 | |
simulateClumpSizeDist | 11.922 | 0.089 | 12.030 | |
simulateNumHitsDist | 2.334 | 0.016 | 2.356 | |