| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-02-19 11:57 -0500 (Thu, 19 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4890 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1360/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| motifbreakR 2.24.0 (landing page) Simon Gert Coetzee
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for motifbreakR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the motifbreakR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/motifbreakR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: motifbreakR |
| Version: 2.24.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 motifbreakR |
| StartedAt: 2026-02-18 19:16:47 -0500 (Wed, 18 Feb 2026) |
| EndedAt: 2026-02-18 19:20:46 -0500 (Wed, 18 Feb 2026) |
| EllapsedTime: 239.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 motifbreakR
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* checking for file ‘motifbreakR/DESCRIPTION’ ... OK
* preparing ‘motifbreakR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘motifbreakR-vignette.Rmd’ using rmarkdown
Quitting from motifbreakR-vignette.Rmd:85-88 [whichsnps]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Bioconductor version cannot be validated; no internet connection? See #troubleshooting section in
vignette
---
Backtrace:
▆
1. └─BSgenome::available.SNPs()
2. └─BSgenome:::get_data_annotation_contrib_url(type)
3. ├─utils::contrib.url(BiocManager::repositories()["BioCann"], type = type)
4. └─BiocManager::repositories()
5. └─BiocManager:::.version_validate(version)
6. ├─base::ifelse(.is_CRAN_check(), .message(txt), .stop(txt))
7. └─BiocManager:::.stop(txt)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'motifbreakR-vignette.Rmd' failed with diagnostics:
Bioconductor version cannot be validated; no internet connection? See #troubleshooting section in
vignette
--- failed re-building ‘motifbreakR-vignette.Rmd’
SUMMARY: processing the following file failed:
‘motifbreakR-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted