Tim Daniel Rose
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/mosbi |
| git_branch: RELEASE_3_20 |
| git_last_commit: 433acc6 |
| git_last_commit_date: 2024-10-29 11:06:10 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:06 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1310/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mosbi 1.12.0 (landing page) Tim Daniel Rose
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the mosbi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mosbi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mosbi |
| Version: 1.12.0 |
| Command: _R_CHECK_FORCE_SUGGESTS_=0 /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mosbi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mosbi_1.12.0.tar.gz |
| StartedAt: 2024-11-20 00:12:58 -0500 (Wed, 20 Nov 2024) |
| EndedAt: 2024-11-20 00:17:19 -0500 (Wed, 20 Nov 2024) |
| EllapsedTime: 261.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: mosbi.Rcheck |
| Warnings: 1 |
##############################################################################
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###
### Running command:
###
### _R_CHECK_FORCE_SUGGESTS_=0 /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mosbi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mosbi_1.12.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/mosbi.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mosbi/DESCRIPTION’ ... OK
* this is package ‘mosbi’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
NOTE
Package suggested but not available for checking: ‘runibic’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mosbi’ can be installed ... WARNING
Found the following significant warnings:
bicluster_methods.cpp:130:18: warning: loop variable 'i' of type 'const int &' binds to a temporary constructed from type 'double &' [-Wrange-loop-construct]
bicluster_methods.cpp:137:18: warning: loop variable 'j' of type 'const int &' binds to a temporary constructed from type 'double &' [-Wrange-loop-construct]
See ‘/Users/biocbuild/bbs-3.20-bioc/meat/mosbi.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... OK
Not all R platforms support C++17
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
‘get_communities’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 5 NOTEs
See
‘/Users/biocbuild/bbs-3.20-bioc/meat/mosbi.Rcheck/00check.log’
for details.
mosbi.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mosbi
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘mosbi’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c attr_graph.cpp -o attr_graph.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c attributeConnector.cpp -o attributeConnector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c attribute_overlap.cpp -o attribute_overlap.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bicluster_methods.cpp -o bicluster_methods.o
bicluster_methods.cpp:130:18: warning: loop variable 'i' of type 'const int &' binds to a temporary constructed from type 'double &' [-Wrange-loop-construct]
for(const int& i : row1){
^
bicluster_methods.cpp:130:7: note: use non-reference type 'int' to make construction explicit or type 'const double &' to prevent copying
for(const int& i : row1){
^~~~~~~~~~~~~~
bicluster_methods.cpp:137:18: warning: loop variable 'j' of type 'const int &' binds to a temporary constructed from type 'double &' [-Wrange-loop-construct]
for(const int& j : col1){
^
bicluster_methods.cpp:137:7: note: use non-reference type 'int' to make construction explicit or type 'const double &' to prevent copying
for(const int& j : col1){
^~~~~~~~~~~~~~
2 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c boost_graph.cpp -o boost_graph.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c boost_write.cpp -o boost_write.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c distance_matrix.cpp -o distance_matrix.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c extractBF.cpp -o extractBF.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c extractQUBIC2.cpp -o extractQUBIC2.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c full_graph.cpp -o full_graph.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc.cpp -o misc.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c network_edge_strength.cpp -o network_edge_strength.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sample_biclusters.cpp -o sample_biclusters.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c write_matrix.cpp -o write_matrix.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o mosbi.so RcppExports.o attr_graph.o attributeConnector.o attribute_overlap.o bicluster_methods.o boost_graph.o boost_write.o distance_matrix.o extractBF.o extractQUBIC2.o full_graph.o misc.o network_edge_strength.o sample_biclusters.o write_matrix.o -L/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-mosbi/00new/mosbi/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mosbi)
mosbi.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(mosbi)
Attaching package: 'mosbi'
The following object is masked from 'package:testthat':
has_names
>
> test_check("mosbi")
6 6
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 13 ]
>
> proc.time()
user system elapsed
0.878 0.141 1.028
mosbi.Rcheck/mosbi-Ex.timings
| name | user | system | elapsed | |
| NoBFBiclusters | 0.000 | 0.000 | 0.001 | |
| algohistogram | 0.000 | 0.000 | 0.001 | |
| apply_threshold-bicluster_net-method | 0 | 0 | 0 | |
| apply_threshold-cooccurrence_net-method | 0.000 | 0.001 | 0.000 | |
| apply_threshold | 0.001 | 0.000 | 0.000 | |
| attr_overlap | 0 | 0 | 0 | |
| attributeConnector | 0.000 | 0.000 | 0.001 | |
| attribute_graph | 0 | 0 | 0 | |
| bicluster-class | 0.002 | 0.001 | 0.002 | |
| bicluster_heatmap-bicluster-matrix-method | 0.023 | 0.002 | 0.024 | |
| bicluster_heatmap | 0.005 | 0.001 | 0.006 | |
| bicluster_net-class | 0.002 | 0.000 | 0.002 | |
| bicluster_net_to_igraph-bicluster_net-method | 0.000 | 0.001 | 0.001 | |
| bicluster_net_to_igraph | 0 | 0 | 0 | |
| bicluster_network | 0 | 0 | 0 | |
| bicluster_to_matrix | 0.001 | 0.000 | 0.000 | |
| check_names | 0 | 0 | 0 | |
| clean_bicluster_list | 0.001 | 0.001 | 0.001 | |
| colhistogram | 0 | 0 | 0 | |
| cooccurrence_net-class | 0.001 | 0.000 | 0.001 | |
| cooccurrence_net_to_igraph-cooccurrence_net-method | 0 | 0 | 0 | |
| cooccurrence_net_to_igraph | 0.000 | 0.000 | 0.001 | |
| cpp_matrix_subsetting | 0.001 | 0.000 | 0.001 | |
| detect_elements | 0.001 | 0.000 | 0.001 | |
| dim-bicluster-method | 0.000 | 0.000 | 0.001 | |
| distance_matrix | 0.001 | 0.000 | 0.001 | |
| ensemble_biclusters | 0.001 | 0.001 | 0.000 | |
| feature_louvain_overlap | 0 | 0 | 0 | |
| feature_network | 0 | 0 | 0 | |
| filter_bicluster_size | 0.001 | 0.000 | 0.001 | |
| filter_biclusters | 0.000 | 0.000 | 0.001 | |
| filter_matrix | 0 | 0 | 0 | |
| filter_subsets | 0.001 | 0.000 | 0.001 | |
| full_graph | 0.001 | 0.000 | 0.000 | |
| getAkmbiclustClusters | 0 | 0 | 0 | |
| getBFCluster | 0 | 0 | 0 | |
| getBicAREbiclusters | 0 | 0 | 0 | |
| getBiclustClusters | 0.000 | 0.000 | 0.001 | |
| getBiclustpyClusters | 0.000 | 0.001 | 0.000 | |
| getFabiaClusters | 0 | 0 | 0 | |
| getIsaClusters | 0 | 0 | 0 | |
| getQUBIC2biclusters | 0.000 | 0.000 | 0.001 | |
| get_adjacency-bicluster_net-method | 0 | 0 | 0 | |
| get_adjacency | 0 | 0 | 0 | |
| get_algorithms | 0.001 | 0.000 | 0.000 | |
| get_bic_net_algorithms-bicluster_net-method | 0 | 0 | 0 | |
| get_bic_net_algorithms | 0 | 0 | 0 | |
| get_biclusters | 0 | 0 | 0 | |
| get_louvain_communities-bicluster_net-method | 0.000 | 0.000 | 0.001 | |
| get_louvain_communities-cooccurrence_net-method | 0 | 0 | 0 | |
| get_louvain_communities | 0 | 0 | 0 | |
| getallBFClusters | 0.000 | 0.001 | 0.000 | |
| has_names | 0 | 0 | 0 | |
| is_subset_or_identical | 0.001 | 0.000 | 0.000 | |
| mouse_data | 0 | 0 | 0 | |
| network_edge_strength | 0 | 0 | 0 | |
| network_edge_strength_float | 0.000 | 0.001 | 0.001 | |
| node_size | 0 | 0 | 0 | |
| occurance_matrix | 0 | 0 | 0 | |
| occurance_table | 0 | 0 | 0 | |
| p_overlap | 0.001 | 0.000 | 0.001 | |
| p_overlap_2d | 0.000 | 0.001 | 0.001 | |
| p_overlap_2d_higher | 0 | 0 | 0 | |
| p_overlap_higher | 0 | 0 | 0 | |
| plot-bicluster_net-missing-method | 0 | 0 | 0 | |
| plot-cooccurrence_net-missing-method | 0 | 0 | 0 | |
| plot_algo_network | 0.000 | 0.001 | 0.000 | |
| plot_piechart_bicluster_network | 0.000 | 0.000 | 0.001 | |
| randomize_matrix | 0.000 | 0.000 | 0.001 | |
| replace_threshold | 0 | 0 | 0 | |
| replace_values | 0 | 0 | 0 | |
| replace_values_float | 0.000 | 0.001 | 0.001 | |
| rowhistogram | 0.000 | 0.000 | 0.001 | |
| run_akmbiclust | 0.001 | 0.000 | 0.000 | |
| run_bimax | 0 | 0 | 0 | |
| run_cc | 0.000 | 0.001 | 0.000 | |
| run_fabia | 0.000 | 0.000 | 0.001 | |
| run_isa | 0 | 0 | 0 | |
| run_plaid | 0 | 0 | 0 | |
| run_qubic | 0 | 0 | 0 | |
| run_quest | 0.000 | 0.000 | 0.001 | |
| run_spectral | 0 | 0 | 0 | |
| run_unibic | 0 | 0 | 0 | |
| run_xmotifs | 0 | 0 | 0 | |
| sample_biclusters | 0 | 0 | 0 | |
| select_biclusters_from_bicluster_network-bicluster_net-list-method | 0.000 | 0.000 | 0.001 | |
| select_biclusters_from_bicluster_network | 0 | 0 | 0 | |
| set_bicluster_names | 0.001 | 0.000 | 0.001 | |
| similarity_matrix | 0.001 | 0.000 | 0.000 | |
| transpose_bicluster | 0.001 | 0.000 | 0.001 | |
| validate_bicluster | 0 | 0 | 0 | |
| write_graphml | 0 | 0 | 0 | |
| write_matrix | 0.000 | 0.001 | 0.001 | |
| zero_subsetting | 0 | 0 | 0 | |