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This page was generated on 2024-12-23 12:06 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1296/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mobileRNA 1.2.0  (landing page)
Katie Jeynes-Cupper
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/mobileRNA
git_branch: RELEASE_3_20
git_last_commit: 1d6872e
git_last_commit_date: 2024-10-29 11:27:50 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for mobileRNA on merida1

To the developers/maintainers of the mobileRNA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mobileRNA
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.2.0.tar.gz
StartedAt: 2024-12-20 06:14:11 -0500 (Fri, 20 Dec 2024)
EndedAt: 2024-12-20 06:25:02 -0500 (Fri, 20 Dec 2024)
EllapsedTime: 650.9 seconds
RetCode: 0
Status:   OK  
CheckDir: mobileRNA.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.2.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/mobileRNA.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mobileRNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mobileRNA’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mobileRNA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
RNAdistribution         32.988  0.131  33.957
RNAdicercall            30.578  0.396  31.870
RNAsubset               30.266  0.121  31.087
RNAdifferentialAnalysis 16.972  0.308  18.162
RNAsummary              13.161  0.121  13.796
RNApopulation            7.853  0.089   8.053
plotSamplePCA            6.651  0.057   6.823
plotSampleDistance       5.684  0.068   5.908
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

mobileRNA.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mobileRNA
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘mobileRNA’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mobileRNA)

Tests output


Example timings

mobileRNA.Rcheck/mobileRNA-Ex.timings

nameusersystemelapsed
RNAattributes1.9130.0422.043
RNAdf2se0.4990.0080.527
RNAdicercall30.578 0.39631.870
RNAdifferentialAnalysis16.972 0.30818.162
RNAdistribution32.988 0.13133.957
RNAfeatures2.9900.0213.094
RNAimport0.0010.0010.002
RNAmergeAnnotations0.6790.0110.700
RNAmergeGenomes0.1010.0050.107
RNAmobile1.8240.0141.848
RNApopulation7.8530.0898.053
RNAreorder0.2880.0050.293
RNAsequences3.9150.0303.984
RNAsubset30.266 0.12131.087
RNAsummary13.161 0.12113.796
mRNA_data0.0660.0030.074
mapRNA0.0000.0010.001
plotHeatmap1.8730.0111.953
plotRNAfeatures2.5220.0122.595
plotSampleDistance5.6840.0685.908
plotSamplePCA6.6510.0576.823
sRNA_data0.2970.0040.303