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This page was generated on 2024-12-23 12:06 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1219/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methodical 1.2.0  (landing page)
Richard Heery
Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/methodical
git_branch: RELEASE_3_20
git_last_commit: 521de48
git_last_commit_date: 2024-10-29 11:26:38 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for methodical on merida1

To the developers/maintainers of the methodical package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methodical.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: methodical
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methodical
StartedAt: 2024-12-19 20:00:33 -0500 (Thu, 19 Dec 2024)
EndedAt: 2024-12-19 20:06:44 -0500 (Thu, 19 Dec 2024)
EllapsedTime: 370.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methodical
###
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* checking for file ‘methodical/DESCRIPTION’ ... OK
* preparing ‘methodical’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘calculating_methylation_transcription_correlations.Rmd’ using rmarkdown

Quitting from lines 141-155 [unnamed-chunk-6] (calculating_methylation_transcription_correlations.Rmd)
Error: processing vignette 'calculating_methylation_transcription_correlations.Rmd' failed with diagnostics:
unused arguments (expand_upstream = 5000, expand_downstream = 5000)
--- failed re-building ‘calculating_methylation_transcription_correlations.Rmd’

--- re-building ‘identifying_tmrs.Rmd’ using rmarkdown

Quitting from lines 68-82 [unnamed-chunk-4] (identifying_tmrs.Rmd)
Error: processing vignette 'identifying_tmrs.Rmd' failed with diagnostics:
unused arguments (expand_upstream = 5000, expand_downstream = 5000)
--- failed re-building ‘identifying_tmrs.Rmd’

--- re-building ‘working_with_meth_rses.Rmd’ using rmarkdown
--- finished re-building ‘working_with_meth_rses.Rmd’

SUMMARY: processing the following files failed:
  ‘calculating_methylation_transcription_correlations.Rmd’
  ‘identifying_tmrs.Rmd’

Error: Vignette re-building failed.
Execution halted