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### Running command:
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### rm -rf metapod.buildbin-libdir && mkdir metapod.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=metapod.buildbin-libdir metapod_1.14.0.tar.gz
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* installing *source* package 'metapod' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c combine_group.cpp -o combine_group.o
combine_group.cpp: In instantiation of 'Rcpp::List compute_grouped(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::RObject, bool, const PREP&) [with PREP = p_simes; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
combine_group.cpp:81:27: required from here
combine_group.cpp:41:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
41 | for (size_t g = 0; g < runs.size(); ++g) {
| ~~^~~~~~~~~~~~~
combine_group.cpp:68:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
68 | if (counter != pvals.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~
combine_group.cpp: In instantiation of 'Rcpp::List compute_grouped(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::RObject, bool, const PREP&) [with PREP = p_berger; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
combine_group.cpp:86:27: required from here
combine_group.cpp:41:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
41 | for (size_t g = 0; g < runs.size(); ++g) {
| ~~^~~~~~~~~~~~~
combine_group.cpp:68:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
68 | if (counter != pvals.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~
combine_group.cpp: In instantiation of 'Rcpp::List compute_grouped(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::RObject, bool, const PREP&) [with PREP = p_wilkinson; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
combine_group.cpp:91:27: required from here
combine_group.cpp:41:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
41 | for (size_t g = 0; g < runs.size(); ++g) {
| ~~^~~~~~~~~~~~~
combine_group.cpp:68:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
68 | if (counter != pvals.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~
combine_group.cpp: In instantiation of 'Rcpp::List compute_grouped(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::RObject, bool, const PREP&) [with PREP = p_holm_min; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
combine_group.cpp:96:27: required from here
combine_group.cpp:41:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
41 | for (size_t g = 0; g < runs.size(); ++g) {
| ~~^~~~~~~~~~~~~
combine_group.cpp:68:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
68 | if (counter != pvals.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~
combine_group.cpp: In instantiation of 'Rcpp::List compute_grouped(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::RObject, bool, const PREP&) [with PREP = p_stouffer; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
combine_group.cpp:101:27: required from here
combine_group.cpp:41:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
41 | for (size_t g = 0; g < runs.size(); ++g) {
| ~~^~~~~~~~~~~~~
combine_group.cpp:68:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
68 | if (counter != pvals.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~
combine_group.cpp: In instantiation of 'Rcpp::List compute_grouped(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::RObject, bool, const PREP&) [with PREP = p_fisher; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
combine_group.cpp:106:27: required from here
combine_group.cpp:41:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
41 | for (size_t g = 0; g < runs.size(); ++g) {
| ~~^~~~~~~~~~~~~
combine_group.cpp:68:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
68 | if (counter != pvals.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~
combine_group.cpp: In instantiation of 'Rcpp::List compute_grouped(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::RObject, bool, const PREP&) [with PREP = p_pearson; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
combine_group.cpp:111:27: required from here
combine_group.cpp:41:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
41 | for (size_t g = 0; g < runs.size(); ++g) {
| ~~^~~~~~~~~~~~~
combine_group.cpp:68:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
68 | if (counter != pvals.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c combine_parallel.cpp -o combine_parallel.o
combine_parallel.cpp: In constructor 'parallel_weight_server::parallel_weight_server(size_t, size_t, Rcpp::RObject)':
combine_parallel.cpp:28:36: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare]
28 | if (wrepeat.size() != nvectors) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from p_berger.h:4,
from combine_parallel.cpp:1:
utils.h: In instantiation of 'parallel_vectors<V>::parallel_vectors(Rcpp::List) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::List = Rcpp::Vector<19>]':
combine_parallel.cpp:20:82: required from here
utils.h:72:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
72 | if (nelements != vectors[p].size()) {
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c count_direction.cpp -o count_direction.o
count_direction.cpp: In function 'Rcpp::List count_grouped_direction(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::NumericVector, int, double, double, bool)':
count_direction.cpp:95:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
95 | for (size_t g = 0; g < runs.size(); ++g) {
| ~~^~~~~~~~~~~~~
count_direction.cpp:98:25: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
98 | if (counter >= pvalues.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~
count_direction.cpp:120:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
120 | if (counter != pvalues.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from count_direction.cpp:2:
utils.h: In instantiation of 'parallel_vectors<V>::parallel_vectors(Rcpp::List) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::List = Rcpp::Vector<19>]':
count_direction.cpp:40:58: required from here
utils.h:72:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
72 | if (nelements != vectors[p].size()) {
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c summarize_direction.cpp -o summarize_direction.o
summarize_direction.cpp: In function 'Rcpp::IntegerVector summarize_grouped_direction(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::LogicalVector, double)':
summarize_direction.cpp:43:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
43 | for (size_t g = 0; g < runs.size(); ++g) {
| ~~^~~~~~~~~~~~~
summarize_direction.cpp:46:25: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
46 | if (counter >= effects.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~
summarize_direction.cpp:61:17: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
61 | if (counter != effects.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from summarize_direction.cpp:2:
utils.h: In instantiation of 'parallel_vectors<V>::parallel_vectors(Rcpp::List) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::List = Rcpp::Vector<19>]':
summarize_direction.cpp:10:58: required from here
utils.h:72:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
72 | if (nelements != vectors[p].size()) {
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
utils.h: In instantiation of 'parallel_vectors<V>::parallel_vectors(Rcpp::List) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::List = Rcpp::Vector<19>]':
summarize_direction.cpp:11:66: required from here
utils.h:72:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
g++ -shared -s -static-libgcc -o metapod.dll tmp.def RcppExports.o combine_group.o combine_parallel.o count_direction.o summarize_direction.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/meat/metapod.buildbin-libdir/00LOCK-metapod/00new/metapod/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'metapod' as metapod_1.14.0.zip
* DONE (metapod)