John R. Stevens
| Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/metahdep |
| git_branch: RELEASE_3_20 |
| git_last_commit: bc635e9 |
| git_last_commit_date: 2024-10-29 09:30:53 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-23 12:05 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1208/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metahdep 1.64.0 (landing page) John R. Stevens
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the metahdep package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: metahdep |
| Version: 1.64.0 |
| Command: rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=metahdep.buildbin-libdir metahdep_1.64.0.tar.gz |
| StartedAt: 2024-12-20 08:31:20 -0500 (Fri, 20 Dec 2024) |
| EndedAt: 2024-12-20 08:31:38 -0500 (Fri, 20 Dec 2024) |
| EllapsedTime: 18.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: metahdep_1.64.0.zip |
| PackageFileSize: 548.2 KiB |
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### Running command:
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### rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=metahdep.buildbin-libdir metahdep_1.64.0.tar.gz
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* installing *source* package 'metahdep' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
F:/biocbuild/bbs-3.20-bioc/R/include/Rinternals.h:200:17: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
200 | #define CHAR(x) R_CHAR(x)
| ^~~~~~~~~
| |
| const char *
metahdep.c:471:107: note: in expansion of macro 'CHAR'
471 | index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
| ^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
372 | SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
| ~~~~~^~~~~~~~~~~~
gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/meat/metahdep.buildbin-libdir/00LOCK-metahdep/00new/metahdep/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'metahdep' as metahdep_1.64.0.zip
* DONE (metahdep)