John R. Stevens
| Snapshot Date: 2025-08-14 13:40 -0400 (Thu, 14 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/metahdep |
| git_branch: RELEASE_3_21 |
| git_last_commit: a03807f |
| git_last_commit_date: 2025-04-15 09:44:10 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-08-18 11:42 -0400 (Mon, 18 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4824 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4566 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4604 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4545 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1234/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metahdep 1.66.0 (landing page) John R. Stevens
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the metahdep package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: metahdep |
| Version: 1.66.0 |
| Command: chmod a+r metahdep -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data metahdep |
| StartedAt: 2025-08-14 20:16:28 -0400 (Thu, 14 Aug 2025) |
| EndedAt: 2025-08-14 20:16:31 -0400 (Thu, 14 Aug 2025) |
| EllapsedTime: 3.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r metahdep -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data metahdep
###
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* checking for file 'metahdep/DESCRIPTION' ... OK
* preparing 'metahdep':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package 'metahdep' ...
** this is package 'metahdep' version '1.66.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
E:/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:203:17: error: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
203 | #define CHAR(x) R_CHAR(x)
| ^~~~~~~~~
| |
| const char *
metahdep.c:471:107: note: in expansion of macro 'CHAR'
471 | index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
| ^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
372 | SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
| ~~~~~^~~~~~~~~~~~
make: *** [E:/biocbuild/bbs-3.21-bioc/R/etc/x64/Makeconf:289: metahdep.o] Error 1
ERROR: compilation failed for package 'metahdep'
* removing 'E:/biocbuild/bbs-3.21-bioc/tmpdir/RtmpcFqYKR/Rinst10a545c7d2c5c/metahdep'
-----------------------------------
ERROR: package installation failed