Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1149/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mbkmeans 1.21.0 (landing page) Davide Risso
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the mbkmeans package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbkmeans.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: mbkmeans |
Version: 1.21.0 |
Command: rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=mbkmeans.buildbin-libdir mbkmeans_1.21.0.tar.gz |
StartedAt: 2024-07-16 06:23:44 -0400 (Tue, 16 Jul 2024) |
EndedAt: 2024-07-16 06:24:51 -0400 (Tue, 16 Jul 2024) |
EllapsedTime: 67.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: mbkmeans_1.21.0.zip |
PackageFileSize: 705.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=mbkmeans.buildbin-libdir mbkmeans_1.21.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'mbkmeans' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 13.2.0' using C++11 g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo:26, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from mini_batch.cpp:2: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:353:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 353 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:358:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 358 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:361:61: note: '#pragma message: INFO: see the documentation for details' 361 | #pragma message ("INFO: see the documentation for details") | ^ In file included from mini_batch.cpp:3: C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)': C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:862:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] 862 | bool status; | ^~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_full<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]': C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1592:65: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] 1530 | bool status; | ^~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_diag<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]': C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1626:65: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.20-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'mbkmeans' as mbkmeans_1.21.0.zip * DONE (mbkmeans)