Davide Risso
| Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/mbkmeans |
| git_branch: devel |
| git_last_commit: 8980ffa |
| git_last_commit_date: 2024-04-30 11:13:46 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-06-11 15:40 -0400 (Tue, 11 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1147/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mbkmeans 1.21.0 (landing page) Davide Risso
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the mbkmeans package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbkmeans.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mbkmeans |
| Version: 1.21.0 |
| Command: rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=mbkmeans.buildbin-libdir mbkmeans_1.21.0.tar.gz |
| StartedAt: 2024-06-10 14:06:58 -0400 (Mon, 10 Jun 2024) |
| EndedAt: 2024-06-10 14:09:07 -0400 (Mon, 10 Jun 2024) |
| EllapsedTime: 128.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: mbkmeans_1.21.0.zip |
| PackageFileSize: 705.5 KiB |
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### Running command:
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### rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=mbkmeans.buildbin-libdir mbkmeans_1.21.0.tar.gz
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* installing *source* package 'mbkmeans' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o
In file included from F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo:26,
from F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29,
from mini_batch.cpp:2:
F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
326 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:331:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
331 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
F:/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:334:61: note: '#pragma message: INFO: see the documentation for details'
334 | #pragma message ("INFO: see the documentation for details")
| ^
In file included from mini_batch.cpp:3:
F:/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
F:/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:862:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
862 | bool status;
| ^~~~~~
F:/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_full<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
F:/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1592:65: required from here
F:/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
1530 | bool status;
| ^~~~~~
F:/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_diag<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
F:/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1626:65: required from here
F:/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'mbkmeans' as mbkmeans_1.21.0.zip
* DONE (mbkmeans)