| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:02 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1153/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| martini 1.26.0 (landing page) Hector Climente-Gonzalez
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the martini package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/martini.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: martini |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:martini.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings martini_1.26.0.tar.gz |
| StartedAt: 2024-11-20 05:13:11 -0500 (Wed, 20 Nov 2024) |
| EndedAt: 2024-11-20 05:15:01 -0500 (Wed, 20 Nov 2024) |
| EllapsedTime: 110.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: martini.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:martini.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings martini_1.26.0.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/martini.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘martini/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘martini’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘martini’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
get_GI_network: no visible binding for global variable ‘gene1’
get_GI_network: no visible binding for global variable ‘gene2’
get_GM_network: no visible binding for global variable ‘gene’
group_snps: no visible binding for global variable ‘.’
Undefined global functions or variables:
. gene gene1 gene2
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
Documented arguments not in \usage in Rd file 'organism_id2name.Rd':
‘organism’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/martini/libs/martini.so’:
Found ‘exit’, possibly from ‘exit’ (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/martini.Rcheck/00check.log’
for details.
martini.Rcheck/00install.out
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### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL martini
###
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* installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘martini’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I/usr/local/include -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `/home/biocbuild/bbs-3.20-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fopenmp -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:205,
from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
from ../inst/include/martini_RcppExports.h:7,
from ../inst/include/martini.h:7,
from RcppExports.cpp:4:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:174:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:165:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:271:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<float, 4, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<float>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 4, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<double>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37,
from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26,
from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:29:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, int>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, 1>’
../inst/include/martini_RcppExports.h:38:93: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, 1>’
../inst/include/martini_RcppExports.h:38:93: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>]’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>; Functor = Eigen::internal::assign_op<double, double>; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>; Func = assign_op<double, double>]’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:917:27: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>]’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from ‘Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Derived&) [with Derived = Eigen::SparseMatrix<double, 0, int>]’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:778:26: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:713:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’
RcppExports.cpp:62:42: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I/usr/local/include -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `/home/biocbuild/bbs-3.20-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fopenmp -fpic -g -O2 -Wall -c mincut.cpp -o mincut.o
In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:205,
from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigen.h:25,
from mincut.cpp:7:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:174:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:165:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Core:271:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<float, 4, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<float>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, 4, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion<double>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/SparseCore:37,
from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/Sparse:26,
from /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/RcppEigenForward.h:29:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix<double, 0, int>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, 1>’
mincut.cpp:41:10: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix<double, -1, 1>’
mincut.cpp:41:10: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/EigenBase.h:42:59: required from ‘struct Eigen::EigenBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:26:34: required from ‘class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >’
mincut.cpp:76:60: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >’
mincut.cpp:76:60: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >’
mincut.cpp:77:32: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
mincut.cpp:77:37: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >’
mincut.cpp:77:37: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
mincut.cpp:81:39: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >’
mincut.cpp:81:53: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:39:43: required from ‘struct Eigen::internal::traits<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:52:7: required from ‘class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >’
mincut.cpp:81:48: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:52:7: required from ‘class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >’
mincut.cpp:81:48: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Select.h:52:7: required from ‘class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >’
mincut.cpp:83:49: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:493:54: required from ‘struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:343:8: required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:687:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]’
mincut.cpp:76:60: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:167:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:506:49: required from ‘struct Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:533:44: required from ‘struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:343:8: required from ‘struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:687:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]’
mincut.cpp:76:60: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>’:
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase<Eigen::Array<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array<double, -1, 1>’
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/../plugins/ArrayCwiseBinaryOps.h:196:1: required from ‘const Eigen::ArrayBase<Derived>::RCmpLTReturnType Eigen::ArrayBase<Derived>::operator>(const Scalar&) const [with Derived = Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >; RCmpLTReturnType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >; Scalar = double]’
mincut.cpp:81:39: required from here
/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’} [-Wignored-attributes]
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/RcppEigen/include' -I/usr/local/include -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `/home/biocbuild/bbs-3.20-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -fopenmp -fpic -g -O2 -Wall -c lib/maxflow/maxflow.cpp -o lib/maxflow/maxflow.o
lib/maxflow/maxflow.cpp: In member function ‘void Graph<captype, tcaptype, flowtype>::reallocate_nodes(int) [with captype = int; tcaptype = int; flowtype = int]’:
lib/maxflow/maxflow.cpp:777:91: warning: pointer ‘nodes_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
777 | if (i->next) i->next = (node*) ((char*)i->next + (((char*) nodes) - ((char*) nodes_old)));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:765:32: note: call to ‘void* realloc(void*, size_t)’ here
765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:781:78: warning: pointer ‘nodes_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
781 | a->head = (node*) ((char*)a->head + (((char*) nodes) - ((char*) nodes_old)));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:765:32: note: call to ‘void* realloc(void*, size_t)’ here
765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp: In member function ‘void Graph<captype, tcaptype, flowtype>::reallocate_arcs() [with captype = int; tcaptype = int; flowtype = int]’:
lib/maxflow/maxflow.cpp:807:143: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
807 | if (i->parent && i->parent != ORPHAN && i->parent != TERMINAL) i->parent = (arc*) ((char*)i->parent + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:806:92: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
806 | if (i->first) i->first = (arc*) ((char*)i->first + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:812:80: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
812 | a->sister = (arc*) ((char*)a->sister + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:811:89: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
811 | if (a->next) a->next = (arc*) ((char*)a->next + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp: In member function ‘void Graph<captype, tcaptype, flowtype>::reallocate_nodes(int) [with captype = short int; tcaptype = int; flowtype = int]’:
lib/maxflow/maxflow.cpp:777:91: warning: pointer ‘nodes_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
777 | if (i->next) i->next = (node*) ((char*)i->next + (((char*) nodes) - ((char*) nodes_old)));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:765:32: note: call to ‘void* realloc(void*, size_t)’ here
765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:781:78: warning: pointer ‘nodes_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
781 | a->head = (node*) ((char*)a->head + (((char*) nodes) - ((char*) nodes_old)));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:765:32: note: call to ‘void* realloc(void*, size_t)’ here
765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp: In member function ‘void Graph<captype, tcaptype, flowtype>::reallocate_arcs() [with captype = short int; tcaptype = int; flowtype = int]’:
lib/maxflow/maxflow.cpp:807:143: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
807 | if (i->parent && i->parent != ORPHAN && i->parent != TERMINAL) i->parent = (arc*) ((char*)i->parent + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:806:92: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
806 | if (i->first) i->first = (arc*) ((char*)i->first + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:812:80: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
812 | a->sister = (arc*) ((char*)a->sister + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:811:89: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
811 | if (a->next) a->next = (arc*) ((char*)a->next + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp: In member function ‘void Graph<captype, tcaptype, flowtype>::reallocate_nodes(int) [with captype = float; tcaptype = float; flowtype = float]’:
lib/maxflow/maxflow.cpp:777:91: warning: pointer ‘nodes_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
777 | if (i->next) i->next = (node*) ((char*)i->next + (((char*) nodes) - ((char*) nodes_old)));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:765:32: note: call to ‘void* realloc(void*, size_t)’ here
765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:781:78: warning: pointer ‘nodes_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
781 | a->head = (node*) ((char*)a->head + (((char*) nodes) - ((char*) nodes_old)));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:765:32: note: call to ‘void* realloc(void*, size_t)’ here
765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp: In member function ‘void Graph<captype, tcaptype, flowtype>::reallocate_arcs() [with captype = float; tcaptype = float; flowtype = float]’:
lib/maxflow/maxflow.cpp:807:143: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
807 | if (i->parent && i->parent != ORPHAN && i->parent != TERMINAL) i->parent = (arc*) ((char*)i->parent + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:806:92: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
806 | if (i->first) i->first = (arc*) ((char*)i->first + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:812:80: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
812 | a->sister = (arc*) ((char*)a->sister + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:811:89: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
811 | if (a->next) a->next = (arc*) ((char*)a->next + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp: In member function ‘void Graph<captype, tcaptype, flowtype>::reallocate_nodes(int) [with captype = double; tcaptype = double; flowtype = double]’:
lib/maxflow/maxflow.cpp:777:91: warning: pointer ‘nodes_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
777 | if (i->next) i->next = (node*) ((char*)i->next + (((char*) nodes) - ((char*) nodes_old)));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:765:32: note: call to ‘void* realloc(void*, size_t)’ here
765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:781:78: warning: pointer ‘nodes_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
781 | a->head = (node*) ((char*)a->head + (((char*) nodes) - ((char*) nodes_old)));
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:765:32: note: call to ‘void* realloc(void*, size_t)’ here
765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp: In member function ‘void Graph<captype, tcaptype, flowtype>::reallocate_arcs() [with captype = double; tcaptype = double; flowtype = double]’:
lib/maxflow/maxflow.cpp:807:143: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
807 | if (i->parent && i->parent != ORPHAN && i->parent != TERMINAL) i->parent = (arc*) ((char*)i->parent + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:806:92: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
806 | if (i->first) i->first = (arc*) ((char*)i->first + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:812:80: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
812 | a->sister = (arc*) ((char*)a->sister + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:811:89: warning: pointer ‘arcs_old’ may be used after ‘void* realloc(void*, size_t)’ [-Wuse-after-free]
811 | if (a->next) a->next = (arc*) ((char*)a->next + (((char*) arcs) - ((char*) arcs_old)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
lib/maxflow/maxflow.cpp:794:30: note: call to ‘void* realloc(void*, size_t)’ here
794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ar -crus libmaxflow.a lib/maxflow/maxflow.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -r lib/maxflow "/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-martini/00new/martini/include"
mkdir -p "/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-martini/00new/martini/usrlib"
cp libmaxflow.a "/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-martini/00new/martini/usrlib"
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o martini.so RcppExports.o mincut.o -pthread -fopenmp /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-martini/00new/martini/usrlib/libmaxflow.a -fopenmp -pthread -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-martini/00new/martini/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (martini)
martini.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(martini)
> library(igraph)
Attaching package: 'igraph'
The following object is masked from 'package:testthat':
compare
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
>
> test_check("martini")
trying URL 'https://stringdb-downloads.org/download/protein.links.v11.5/9606.protein.links.v11.5.txt.gz'
Content type 'application/octet-stream' length 72718210 bytes (69.3 MB)
==================================================
downloaded 69.3 MB
[ FAIL 0 | WARN 4 | SKIP 4 | PASS 232 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On Bioconductor (3): 'test_connect_biomart.R:1:1', 'test_get_gxg.R:1:1',
'test_snp2ensembl.R:1:1'
• empty test (1): 'test_plot_ideogram.R:3:1'
[ FAIL 0 | WARN 4 | SKIP 4 | PASS 232 ]
>
> proc.time()
user system elapsed
47.296 2.599 55.978
martini.Rcheck/martini-Ex.timings
| name | user | system | elapsed | |
| check_installed | 0.000 | 0.001 | 0.000 | |
| get_GI_network | 0.031 | 0.000 | 0.031 | |
| get_GM_network | 0.009 | 0.002 | 0.010 | |
| get_GS_network | 0.004 | 0.000 | 0.004 | |
| get_grid | 0.002 | 0.000 | 0.002 | |
| get_gxg_biogrid | 0 | 0 | 0 | |
| get_gxg_string | 0 | 0 | 0 | |
| get_snp_modules | 0 | 0 | 0 | |
| is_coherent | 0.002 | 0.000 | 0.002 | |
| ldweight_edges | 0.069 | 0.002 | 0.071 | |
| mget_gxg_biogrid | 0.001 | 0.000 | 0.001 | |
| mget_gxg_string | 0 | 0 | 0 | |
| minigwas | 0.011 | 0.002 | 0.014 | |
| minippi | 0.001 | 0.000 | 0.001 | |
| minisnpMapping | 0.001 | 0.000 | 0.001 | |
| scones | 0.035 | 0.001 | 0.036 | |
| scones.cv | 0.091 | 0.003 | 0.094 | |
| scones.cv_ | 0.058 | 0.000 | 0.058 | |
| scones_ | 0.023 | 0.000 | 0.023 | |
| search_cones | 0 | 0 | 0 | |
| sigmod | 0.022 | 0.000 | 0.022 | |
| sigmod.cv | 0.086 | 0.000 | 0.086 | |
| sigmod.cv_ | 0.055 | 0.000 | 0.055 | |
| sigmod_ | 0.023 | 0.000 | 0.024 | |
| simulate_causal_snps | 0.022 | 0.000 | 0.022 | |
| simulate_phenotype | 0.023 | 0.001 | 0.024 | |
| subnet | 0.026 | 0.000 | 0.026 | |
| subvert | 0.017 | 0.001 | 0.018 | |