Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1131/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
martini 1.25.0 (landing page) Hector Climente-Gonzalez
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the martini package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/martini.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: martini |
Version: 1.25.0 |
Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:martini.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings martini_1.25.0.tar.gz |
StartedAt: 2024-07-16 01:22:36 -0400 (Tue, 16 Jul 2024) |
EndedAt: 2024-07-16 01:25:18 -0400 (Tue, 16 Jul 2024) |
EllapsedTime: 162.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: martini.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:martini.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings martini_1.25.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/martini.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'martini/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'martini' version '1.25.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'martini' can be installed ... OK * used C++ compiler: 'G__~1.EXE (GCC) 13.2.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE get_GI_network: no visible binding for global variable 'gene1' get_GI_network: no visible binding for global variable 'gene2' get_GM_network: no visible binding for global variable 'gene' group_snps: no visible binding for global variable '.' Undefined global functions or variables: . gene gene1 gene2 * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE Documented arguments not in \usage in Rd file 'organism_id2name.Rd': 'organism' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.20-bioc/R/library/martini/libs/x64/martini.dll': Found '_exit', possibly from '_exit' (C) Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs nor [v]sprintf. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.20-bioc/meat/martini.Rcheck/00check.log' for details.
martini.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL martini ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'martini' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 13.2.0' g++ -std=gnu++17 -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/biocbuild/bbs-3.20-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Core:205, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/RcppEigenForward.h:28, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from ../inst/include/martini_RcppExports.h:7, from ../inst/include/martini.h:7, from RcppExports.cpp:4: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 222 | template<> struct unpacket_traits<Packet4f> { | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 228 | template<> struct unpacket_traits<Packet2d> { | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) { | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) { | ^ In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Core:174: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \ | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \ | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \ | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \ | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Core:165: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type; | ^~~~ In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Core:271: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<float, 4, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<float>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type; | ^~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 4, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<double>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Sparse:26, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/RcppEigenForward.h:29: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix<double, 0, int>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>' ../inst/include/martini_RcppExports.h:38:93: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type; | ^~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>' ../inst/include/martini_RcppExports.h:38:93: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>]' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>; Functor = Eigen::internal::assign_op<double, double>; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>; Func = assign_op<double, double>]' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:917:27: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>]' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from 'Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Derived&) [with Derived = Eigen::SparseMatrix<double, 0, int>]' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:778:26: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:713:13: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' RcppExports.cpp:62:42: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] g++ -std=gnu++17 -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/biocbuild/bbs-3.20-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mincut.cpp -o mincut.o In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Core:205, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/RcppEigenForward.h:28, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from mincut.cpp:7: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 222 | template<> struct unpacket_traits<Packet4f> { | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 228 | template<> struct unpacket_traits<Packet2d> { | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) { | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) { | ^ In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Core:174: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \ | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \ | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \ | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \ | ^ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Core:165: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type; | ^~~~ In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Core:271: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<float, 4, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<float>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type; | ^~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 4, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<double>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/Sparse:26, from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/RcppEigenForward.h:29: C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix<double, 0, int>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>' mincut.cpp:41:10: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type; | ^~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>' mincut.cpp:41:10: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/EigenBase.h:42:59: required from 'struct Eigen::EigenBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:26:34: required from 'class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >' mincut.cpp:76:60: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int>, Eigen::Sparse>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >' mincut.cpp:76:60: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >' mincut.cpp:77:32: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >' mincut.cpp:77:37: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >' mincut.cpp:77:37: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >' mincut.cpp:81:39: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1>, Eigen::Dense>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> >' mincut.cpp:81:53: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:39:43: required from 'struct Eigen::internal::traits<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7: required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >' mincut.cpp:81:48: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7: required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, 1> > >' mincut.cpp:81:48: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Select.h:52:7: required from 'class Eigen::Select<Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LE>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> > >, Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, Eigen::Matrix<double, -1, 1> >' mincut.cpp:83:49: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:493:54: required from 'struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:343:8: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:687:97: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]' mincut.cpp:76:60: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:167:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:506:49: required from 'struct Eigen::internal::evaluator<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:533:44: required from 'struct Eigen::internal::sparse_conjunction_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:343:8: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >, Eigen::internal::IndexBased, Eigen::internal::IteratorBased, double, double>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> > >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:687:97: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::SparseMatrix<double, 0, int> >; _Scalar = double; int _Options = 0; _StorageIndex = int]' mincut.cpp:76:60: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>': C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, -1, 1>' C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h:196:1: required from 'const Eigen::ArrayBase<Derived>::RCmpLTReturnType Eigen::ArrayBase<Derived>::operator>(const Scalar&) const [with Derived = Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >; RCmpLTReturnType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_cmp_op<double, double, Eigen::internal::cmp_LT>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Array<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >; Scalar = double]' mincut.cpp:81:39: required from here C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes] g++ -std=gnu++17 -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppEigen/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -std=c++11 -fopenmp -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -U_FORTIFY_SOURCE -DBGZF_CACHE -I./lib `C:/Users/biocbuild/bbs-3.20-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lib/maxflow/maxflow.cpp -o lib/maxflow/maxflow.o lib/maxflow/maxflow.cpp: In member function 'void Graph<captype, tcaptype, flowtype>::reallocate_nodes(int) [with captype = int; tcaptype = int; flowtype = int]': lib/maxflow/maxflow.cpp:777:91: warning: pointer 'nodes_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 777 | if (i->next) i->next = (node*) ((char*)i->next + (((char*) nodes) - ((char*) nodes_old))); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:765:32: note: call to 'void* realloc(void*, size_t)' here 765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:781:78: warning: pointer 'nodes_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 781 | a->head = (node*) ((char*)a->head + (((char*) nodes) - ((char*) nodes_old))); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:765:32: note: call to 'void* realloc(void*, size_t)' here 765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp: In member function 'void Graph<captype, tcaptype, flowtype>::reallocate_arcs() [with captype = int; tcaptype = int; flowtype = int]': lib/maxflow/maxflow.cpp:807:143: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 807 | if (i->parent && i->parent != ORPHAN && i->parent != TERMINAL) i->parent = (arc*) ((char*)i->parent + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:806:92: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 806 | if (i->first) i->first = (arc*) ((char*)i->first + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:812:80: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 812 | a->sister = (arc*) ((char*)a->sister + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:811:89: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 811 | if (a->next) a->next = (arc*) ((char*)a->next + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp: In member function 'void Graph<captype, tcaptype, flowtype>::reallocate_nodes(int) [with captype = short int; tcaptype = int; flowtype = int]': lib/maxflow/maxflow.cpp:777:91: warning: pointer 'nodes_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 777 | if (i->next) i->next = (node*) ((char*)i->next + (((char*) nodes) - ((char*) nodes_old))); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:765:32: note: call to 'void* realloc(void*, size_t)' here 765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:781:78: warning: pointer 'nodes_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 781 | a->head = (node*) ((char*)a->head + (((char*) nodes) - ((char*) nodes_old))); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:765:32: note: call to 'void* realloc(void*, size_t)' here 765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp: In member function 'void Graph<captype, tcaptype, flowtype>::reallocate_arcs() [with captype = short int; tcaptype = int; flowtype = int]': lib/maxflow/maxflow.cpp:807:143: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 807 | if (i->parent && i->parent != ORPHAN && i->parent != TERMINAL) i->parent = (arc*) ((char*)i->parent + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:806:92: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 806 | if (i->first) i->first = (arc*) ((char*)i->first + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:812:80: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 812 | a->sister = (arc*) ((char*)a->sister + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:811:89: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 811 | if (a->next) a->next = (arc*) ((char*)a->next + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp: In member function 'void Graph<captype, tcaptype, flowtype>::reallocate_nodes(int) [with captype = float; tcaptype = float; flowtype = float]': lib/maxflow/maxflow.cpp:777:91: warning: pointer 'nodes_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 777 | if (i->next) i->next = (node*) ((char*)i->next + (((char*) nodes) - ((char*) nodes_old))); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:765:32: note: call to 'void* realloc(void*, size_t)' here 765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:781:78: warning: pointer 'nodes_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 781 | a->head = (node*) ((char*)a->head + (((char*) nodes) - ((char*) nodes_old))); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:765:32: note: call to 'void* realloc(void*, size_t)' here 765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp: In member function 'void Graph<captype, tcaptype, flowtype>::reallocate_arcs() [with captype = float; tcaptype = float; flowtype = float]': lib/maxflow/maxflow.cpp:807:143: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 807 | if (i->parent && i->parent != ORPHAN && i->parent != TERMINAL) i->parent = (arc*) ((char*)i->parent + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:806:92: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 806 | if (i->first) i->first = (arc*) ((char*)i->first + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:812:80: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 812 | a->sister = (arc*) ((char*)a->sister + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:811:89: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 811 | if (a->next) a->next = (arc*) ((char*)a->next + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp: In member function 'void Graph<captype, tcaptype, flowtype>::reallocate_nodes(int) [with captype = double; tcaptype = double; flowtype = double]': lib/maxflow/maxflow.cpp:777:91: warning: pointer 'nodes_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 777 | if (i->next) i->next = (node*) ((char*)i->next + (((char*) nodes) - ((char*) nodes_old))); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:765:32: note: call to 'void* realloc(void*, size_t)' here 765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:781:78: warning: pointer 'nodes_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 781 | a->head = (node*) ((char*)a->head + (((char*) nodes) - ((char*) nodes_old))); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:765:32: note: call to 'void* realloc(void*, size_t)' here 765 | nodes = (node*) realloc(nodes_old, node_num_max*sizeof(node)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp: In member function 'void Graph<captype, tcaptype, flowtype>::reallocate_arcs() [with captype = double; tcaptype = double; flowtype = double]': lib/maxflow/maxflow.cpp:807:143: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 807 | if (i->parent && i->parent != ORPHAN && i->parent != TERMINAL) i->parent = (arc*) ((char*)i->parent + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:806:92: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 806 | if (i->first) i->first = (arc*) ((char*)i->first + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:812:80: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 812 | a->sister = (arc*) ((char*)a->sister + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:811:89: warning: pointer 'arcs_old' may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 811 | if (a->next) a->next = (arc*) ((char*)a->next + (((char*) arcs) - ((char*) arcs_old))); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ lib/maxflow/maxflow.cpp:794:30: note: call to 'void* realloc(void*, size_t)' here 794 | arcs = (arc*) realloc(arcs_old, arc_num_max*sizeof(arc)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ar crs libmaxflow.a lib/maxflow/maxflow.o cp -r lib/maxflow "C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-martini/00new/martini/include" mkdir -p "C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-martini/00new/martini/usrlib/x64" cp libmaxflow.a "C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-martini/00new/martini/usrlib/x64" C:\rtools44\x86_64-w64-mingw32.static.posix\bin\nm.exe: 'libs': No such file g++ -std=gnu++17 -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o mincut.o -pthread -fopenmp C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-martini/00new/martini/usrlib/x64/libmaxflow.a -lws2_32 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-martini/00new/martini/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (martini)
martini.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(martini) > library(igraph) Attaching package: 'igraph' The following object is masked from 'package:testthat': compare The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union > > test_check("martini") trying URL 'https://stringdb-downloads.org/download/protein.links.v11.5/9606.protein.links.v11.5.txt.gz' Content type 'application/octet-stream' length 72718210 bytes (69.3 MB) ================================================== downloaded 69.3 MB [ FAIL 0 | WARN 3 | SKIP 8 | PASS 222 ] ══ Skipped tests (8) ═══════════════════════════════════════════════════════════ • On Bioconductor (3): 'test_connect_biomart.R:1:1', 'test_get_gxg.R:1:1', 'test_snp2ensembl.R:1:1' • On Windows (4): 'test_scones.cv.R:22:3', 'test_scones.cv_.R:16:3', 'test_sigmod.cv.R:22:3', 'test_sigmod.cv_.R:17:3' • empty test (1): 'test_plot_ideogram.R:3:1' [ FAIL 0 | WARN 3 | SKIP 8 | PASS 222 ] > > proc.time() user system elapsed 66.78 7.00 82.68
martini.Rcheck/martini-Ex.timings
name | user | system | elapsed | |
check_installed | 0 | 0 | 0 | |
get_GI_network | 0.03 | 0.00 | 0.03 | |
get_GM_network | 0.01 | 0.00 | 0.02 | |
get_GS_network | 0.02 | 0.00 | 0.01 | |
get_grid | 0 | 0 | 0 | |
get_gxg_biogrid | 0 | 0 | 0 | |
get_gxg_string | 0 | 0 | 0 | |
get_snp_modules | 0 | 0 | 0 | |
is_coherent | 0 | 0 | 0 | |
ldweight_edges | 0.08 | 0.00 | 0.08 | |
mget_gxg_biogrid | 0 | 0 | 0 | |
mget_gxg_string | 0 | 0 | 0 | |
minigwas | 0.01 | 0.00 | 0.01 | |
minippi | 0.02 | 0.00 | 0.02 | |
minisnpMapping | 0 | 0 | 0 | |
scones | 0.05 | 0.00 | 0.04 | |
scones.cv | 0.11 | 0.00 | 0.11 | |
scones.cv_ | 0.04 | 0.01 | 0.07 | |
scones_ | 0.05 | 0.00 | 0.04 | |
search_cones | 0 | 0 | 0 | |
sigmod | 0.03 | 0.00 | 0.03 | |
sigmod.cv | 0.09 | 0.02 | 0.11 | |
sigmod.cv_ | 0.07 | 0.02 | 0.08 | |
sigmod_ | 0.03 | 0.00 | 0.03 | |
simulate_causal_snps | 0.01 | 0.00 | 0.02 | |
simulate_phenotype | 0.03 | 0.00 | 0.03 | |
subnet | 0.04 | 0.01 | 0.05 | |
subvert | 0.01 | 0.00 | 0.01 | |