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This page was generated on 2025-05-08 11:47 -0400 (Thu, 08 May 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4833
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4574
merida1macOS 12.7.5 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
kjohnson1macOS 13.6.6 Venturaarm644.5.0 RC (2025-04-04 r88129) -- "How About a Twenty-Six" 4553
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4570
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1180/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.80.0  (landing page)
Maria Jose Nueda
Snapshot Date: 2025-05-05 13:40 -0400 (Mon, 05 May 2025)
git_url: https://git.bioconductor.org/packages/maSigPro
git_branch: RELEASE_3_21
git_last_commit: 8b80c73
git_last_commit_date: 2025-04-15 09:37:14 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for maSigPro on kunpeng2

To the developers/maintainers of the maSigPro package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: maSigPro
Version: 1.80.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings maSigPro_1.80.0.tar.gz
StartedAt: 2025-05-06 10:16:48 -0000 (Tue, 06 May 2025)
EndedAt: 2025-05-06 10:19:57 -0000 (Tue, 06 May 2025)
EllapsedTime: 189.2 seconds
RetCode: 0
Status:   OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings maSigPro_1.80.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/maSigPro.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.80.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
PodiumChange  15.655  0.000  15.680
IsoModel      15.610  0.004  15.638
tableDS       15.428  0.004  15.452
getDS         15.418  0.000  15.440
getDSPatterns 15.360  0.001  15.382
seeDS         15.354  0.004  15.379
IsoPlot       15.335  0.000  15.363
ISOdata       15.151  0.068  15.240
ISOdesign     15.160  0.012  15.194
T.fit          7.092  0.000   7.105
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

maSigPro.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL maSigPro
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘maSigPro’ ...
** this is package ‘maSigPro’ version ‘1.80.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output


Example timings

maSigPro.Rcheck/maSigPro-Ex.timings

nameusersystemelapsed
ISOdata15.151 0.06815.240
ISOdesign15.160 0.01215.194
IsoModel15.610 0.00415.638
IsoPlot15.335 0.00015.363
NBdata0.0010.0000.001
NBdesign0.0000.0000.001
PlotGroups0.0380.0000.039
PlotProfiles0.0050.0000.005
PodiumChange15.655 0.00015.680
T.fit7.0920.0007.105
average.rows0.0030.0000.002
data.abiotic0.0040.0000.003
edesign.abiotic0.0010.0000.001
edesignCT0.0010.0000.001
edesignDR0.0010.0000.001
get.siggenes3.3340.0003.337
getDS15.418 0.00015.440
getDSPatterns15.360 0.00115.382
i.rank000
maSigProUsersGuide0.0000.0040.004
make.design.matrix0.0050.0000.005
p.vector2.2030.0042.210
position000
reg.coeffs0.0000.0010.000
see.genes1.2070.0031.212
seeDS15.354 0.00415.379
stepback0.0330.0000.034
stepfor0.1180.0000.119
suma2Venn0.0220.0000.024
tableDS15.428 0.00415.452
two.ways.stepback0.10.00.1
two.ways.stepfor0.1340.0000.134