| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-06 12:00 -0500 (Thu, 06 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4902 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4638 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1068/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| interacCircos 1.20.0 (landing page) Zhe Cui
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the interacCircos package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/interacCircos.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: interacCircos |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:interacCircos.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings interacCircos_1.20.0.tar.gz |
| StartedAt: 2025-11-06 00:47:30 -0500 (Thu, 06 Nov 2025) |
| EndedAt: 2025-11-06 00:48:02 -0500 (Thu, 06 Nov 2025) |
| EllapsedTime: 32.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: interacCircos.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:interacCircos.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings interacCircos_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/interacCircos.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘interacCircos/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘interacCircos’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘interacCircos’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
interacCircos.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL interacCircos ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘interacCircos’ ... ** this is package ‘interacCircos’ version ‘1.20.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (interacCircos)
interacCircos.Rcheck/interacCircos-Ex.timings
| name | user | system | elapsed | |
| Circos | 0.099 | 0.007 | 0.110 | |
| CircosArc | 0.109 | 0.015 | 0.123 | |
| CircosAuxLine | 0.058 | 0.012 | 0.069 | |
| CircosBackground | 0.054 | 0.004 | 0.057 | |
| CircosBubble | 0.294 | 0.006 | 0.300 | |
| CircosChord | 0.062 | 0.005 | 0.068 | |
| CircosChord.p | 0.058 | 0.005 | 0.062 | |
| CircosCnv | 0.188 | 0.003 | 0.190 | |
| CircosGene | 0.067 | 0.006 | 0.072 | |
| CircosHeatmap | 0.304 | 0.005 | 0.309 | |
| CircosHistogram | 0.131 | 0.017 | 0.148 | |
| CircosLegend | 0.059 | 0.008 | 0.068 | |
| CircosLine | 0.281 | 0.005 | 0.285 | |
| CircosLink | 0.069 | 0.003 | 0.071 | |
| CircosLollipop | 0.150 | 0.007 | 0.156 | |
| CircosScatter | 0.892 | 0.008 | 0.899 | |
| CircosSnp | 0.435 | 0.006 | 0.440 | |
| CircosText | 0.058 | 0.006 | 0.063 | |
| CircosWig | 0.871 | 0.004 | 0.875 | |