Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:04 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1025/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
impute 1.80.0 (landing page) Balasubramanian Narasimhan
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | |||||||||
To the developers/maintainers of the impute package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/impute.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: impute |
Version: 1.80.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:impute.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings impute_1.80.0.tar.gz |
StartedAt: 2024-12-20 01:22:23 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 01:26:19 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 236.2 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: impute.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:impute.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings impute_1.80.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/impute.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘impute/DESCRIPTION’ ... OK * this is package ‘impute’ version ‘1.80.0’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘impute’ can be installed ... WARNING Found the following significant warnings: Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1) See ‘/home/biocbuild/bbs-3.20-bioc/meat/impute.Rcheck/00install.out’ for details. * used Fortran compiler: ‘GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking usage of KIND in Fortran files ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.20-bioc/meat/impute.Rcheck/00check.log’ for details.
impute.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL impute ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘impute’ ... ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gfortran -fpic -g -O2 -Wall -c knnimpute.f -o knnimpute.o f951: Warning: Nonconforming tab character in column 1 of line 89 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 91 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 92 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 93 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 94 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 95 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 96 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 97 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 98 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 99 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 101 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 102 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 103 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 104 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 105 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 106 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 107 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 108 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 109 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 110 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 111 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 112 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 113 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 114 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 115 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 116 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 117 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 118 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 119 [-Wtabs] f951: Warning: Nonconforming tab character in column 3 of line 120 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 121 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 122 [-Wtabs] knnimpute.f:99:72: 99 | 20 pos(k1+1) = pos(k1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) knnimpute.f:113:72: 113 | 35 pos(k1+1) = pos(k1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1) knnimpute.f:168:72: 168 | ratio=dabs(dnew-dold)/dold | ^ Warning: ‘dold’ may be used uninitialized [-Wmaybe-uninitialized] knnimpute.f:132:33: 132 | double precision ratio,dold,dnew | ^ note: ‘dold’ was declared here gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o impute.so knnimpute.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-impute/00new/impute/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (impute)
impute.Rcheck/impute-Ex.timings
name | user | system | elapsed | |
impute.knn | 0.319 | 0.034 | 0.354 | |
khanmiss | 0.128 | 0.000 | 0.128 | |