Till Soerensen
| Snapshot Date: 2025-12-04 13:45 -0500 (Thu, 04 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_22 |
| git_last_commit: 3c4237c |
| git_last_commit_date: 2025-10-29 10:24:29 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-08 12:02 -0500 (Mon, 08 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4879 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4668 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4669 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1051/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.42.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-12-05 02:59:50 -0000 (Fri, 05 Dec 2025) |
| EndedAt: 2025-12-05 03:03:32 -0000 (Fri, 05 Dec 2025) |
| EllapsedTime: 222.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=158<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=89) has 2 sub-cluster at 2 (9), ICL=104<>30
split 2 into 2 clusters
cluster 1(N=215) has 3 sub-cluster at 3 (7), ICL=32<>30
split 1 into 3 clusters
cluster 1(N=215) has 3 sub-cluster at 3 (7), ICL=0<>30
Model Refinement takes 0.017 mins(max 2: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 4 takes 0 mins, 13 iterations
cluster 3(N=135) has 2 sub-cluster at 2 (5), ICL=100<>34
split 3 into 2 clusters
cluster 2(N=314) has 2 sub-cluster at 2 (18), ICL=61<>34
split 2 into 2 clusters
cluster 1(N=239) has 2 sub-cluster at 2 (5), ICL=25<>34
cluster 4(N=65) has 2 sub-cluster at 2 (15), ICL=22<>34
cluster 1(N=239) has 2 sub-cluster at 2 (5), ICL=0<>34
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 5 takes 0 mins, 37 iterations
cluster 4(N=117) has 3 sub-cluster at 3 (12), ICL=52<>37
split 4 into 3 clusters
cluster 1(N=82) has 4 sub-cluster at 4 (8), ICL=34<>37
cluster 5(N=132) has 2 sub-cluster at 2 (100), ICL=17<>37
cluster 3(N=136) has 6 sub-cluster at 7 (37), ICL=15<>37
cluster 1(N=82) has 4 sub-cluster at 4 (8), ICL=0<>37
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=5->7 N=2420
EM 7 takes 0 mins, 8 iterations
cluster 1(N=97) has 3 sub-cluster at 3 (7), ICL=53<>41
split 1 into 3 clusters
cluster 7(N=219) has 2 sub-cluster at 2 (6), ICL=45<>41
split 7 into 2 clusters
cluster 3(N=282) has 2 sub-cluster at 2 (6), ICL=20<>41
cluster 5(N=99) has 2 sub-cluster at 2 (8), ICL=19<>41
cluster 6(N=39) has 4 sub-cluster at 4 (30), ICL=16<>41
cluster 4(N=136) has 2 sub-cluster at 2 (6), ICL=11<>41
cluster 1(N=97) has 3 sub-cluster at 3 (7), ICL=0<>41
Model Refinement takes 0.13 mins(max 2: 0.05)
Fit Model 5 of (6/10) K=7->10 N=4841
EM 10 takes 0 mins, 9 iterations
cluster 2(N=75) has 2 sub-cluster at 2 (20), ICL=24<>45
cluster 6(N=220) has 3 sub-cluster at 3 (12), ICL=22<>45
cluster 5(N=543) has 2 sub-cluster at 2 (6), ICL=22<>45
cluster 10(N=36) has 2 sub-cluster at 2 (9), ICL=22<>45
cluster 7(N=191) has 6 sub-cluster at 6 (41), ICL=22<>45
cluster 8(N=99) has 5 sub-cluster at 7 (26), ICL=15<>45
cluster 9(N=470) has 4 sub-cluster at 4 (27), ICL=14<>45
cluster 1(N=154) has 6 sub-cluster at 8 (41), ICL=13<>45
cluster 3(N=39) has 2 sub-cluster at 3 (10), ICL=12<>45
cluster 1(N=154) has 6 sub-cluster at 8 (41), ICL=0<>45
Model Refinement takes 0.2 mins(max 4: 0.067)
Fit Model 6 of (6/10) K=10->10 N=9682
EM 10 takes 0.017 mins, 5 iterations
cluster 2(N=158) has 2 sub-cluster at 2 (8), ICL=51<>48
split 2 into 2 clusters
cluster 7(N=391) has 2 sub-cluster at 2 (7), ICL=51<>48
split 7 into 2 clusters
cluster 9(N=908) has 3 sub-cluster at 3 (27), ICL=31<>48
cluster 10(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 6(N=429) has 2 sub-cluster at 2 (5), ICL=26<>48
cluster 5(N=1120) has 2 sub-cluster at 2 (18), ICL=24<>48
cluster 8(N=179) has 5 sub-cluster at 6 (48), ICL=12<>48
cluster 3(N=76) has 4 sub-cluster at 5 (15), ICL=11<>48
cluster 1(N=314) has 2 sub-cluster at 2 (7), ICL=5.9<>48
cluster 1(N=314) has 2 sub-cluster at 2 (7), ICL=0<>48
Model Refinement takes 0.25 mins(max 4: 0.067)
Fit Model 7 of (6/10) K=10->12 N=9682
EM 12 takes 0 mins, 3 iterations
cluster 12(N=60) has 4 sub-cluster at 4 (52), ICL=46<>48
cluster 6(N=1112) has 2 sub-cluster at 2 (6), ICL=34<>48
cluster 11(N=908) has 3 sub-cluster at 3 (12), ICL=30<>48
cluster 7(N=430) has 2 sub-cluster at 2 (5), ICL=26<>48
cluster 3(N=58) has 3 sub-cluster at 3 (12), ICL=23<>48
cluster 9(N=89) has 5 sub-cluster at 6 (33), ICL=15<>48
cluster 2(N=107) has 3 sub-cluster at 3 (34), ICL=12<>48
cluster 4(N=76) has 4 sub-cluster at 5 (15), ICL=11<>48
cluster 10(N=179) has 4 sub-cluster at 4 (49), ICL=10<>48
cluster 8(N=336) has 6 sub-cluster at 7 (35), ICL=8.3<>48
cluster 1(N=313) has 2 sub-cluster at 2 (7), ICL=6<>48
cluster 1(N=313) has 2 sub-cluster at 2 (7), ICL=0<>48
Model Refinement takes 0.27 mins(max 5: 0.05)
Fit Model 8 of (6/10) K=12->12 N=9682
EM 12 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=167<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=106) has 3 sub-cluster at 3 (9), ICL=124<>25
split 2 into 3 clusters
cluster 1(N=198) has 4 sub-cluster at 4 (50), ICL=67<>25
split 1 into 4 clusters
cluster 1(N=198) has 4 sub-cluster at 4 (50), ICL=0<>25
Model Refinement takes 0.05 mins(max 2: 0.033)
Fit Model 2 of (6/10) K=2->7 N=605
EM 5 takes 0 mins, 50 iterations
cluster 3(N=71) has 4 sub-cluster at 4 (31), ICL=36<>28
split 3 into 4 clusters
cluster 5(N=58) has 6 sub-cluster at 6 (77), ICL=31<>28
split 5 into 6 clusters
Model Refinement takes 0.05 mins(max 2: 0.017)
Fit Model 3 of (6/10) K=5->13 N=1210
EM 10 takes 0.017 mins, 28 iterations
cluster 9(N=25) has 2 sub-cluster at 2 (100), ICL=42<>31
split 9 into 2 clusters
cluster 6(N=124) has 2 sub-cluster at 2 (5), ICL=31<>31
cluster 7(N=28) has 2 sub-cluster at 2 (13), ICL=26<>31
cluster 10(N=29) has 3 sub-cluster at 3 (11), ICL=18<>31
cluster 4(N=109) has 6 sub-cluster at 7 (27), ICL=15<>31
cluster 3(N=51) has 4 sub-cluster at 4 (12), ICL=12<>31
cluster 1(N=51) has 2 sub-cluster at 2 (100), ICL=9.6<>31
cluster 1(N=51) has 2 sub-cluster at 2 (100), ICL=0<>31
Model Refinement takes 0.083 mins(max 2: 0.017)
Fit Model 4 of (6/10) K=10->11 N=2420
EM 10 takes 0 mins, 20 iterations
cluster 1(N=95) has 3 sub-cluster at 3 (7), ICL=52<>34
split 1 into 3 clusters
cluster 6(N=232) has 2 sub-cluster at 2 (11), ICL=49<>34
split 6 into 2 clusters
cluster 4(N=186) has 3 sub-cluster at 3 (32), ICL=20<>34
cluster 8(N=118) has 6 sub-cluster at 6 (25), ICL=19<>34
cluster 10(N=44) has 3 sub-cluster at 3 (17), ICL=17<>34
cluster 5(N=16) has 2 sub-cluster at 2 (6), ICL=17<>34
cluster 9(N=34) has 3 sub-cluster at 3 (23), ICL=16<>34
cluster 3(N=171) has 6 sub-cluster at 7 (40), ICL=15<>34
cluster 7(N=72) has 3 sub-cluster at 3 (22), ICL=13<>34
cluster 1(N=95) has 3 sub-cluster at 3 (7), ICL=0<>34
Model Refinement takes 0.17 mins(max 2: 0.05)
Fit Model 5 of (6/10) K=10->13 N=4841
EM 13 takes 0.017 mins, 20 iterations
cluster 3(N=49) has 2 sub-cluster at 2 (100), ICL=61<>37
split 3 into 2 clusters
cluster 7(N=9) has 2 sub-cluster at 2 (100), ICL=38<>37
split 7 into 2 clusters
cluster 2(N=164) has 4 sub-cluster at 5 (39), ICL=24<>37
cluster 11(N=197) has 6 sub-cluster at 6 (33), ICL=23<>37
cluster 6(N=240) has 5 sub-cluster at 5 (56), ICL=19<>37
cluster 8(N=442) has 8 sub-cluster at 8 (31), ICL=18<>37
cluster 13(N=96) has 3 sub-cluster at 5 (26), ICL=17<>37
cluster 1(N=66) has 4 sub-cluster at 4 (35), ICL=16<>37
cluster 9(N=24) has 2 sub-cluster at 2 (100), ICL=15<>37
cluster 10(N=159) has 6 sub-cluster at 6 (38), ICL=12<>37
cluster 12(N=41) has 2 sub-cluster at 2 (21), ICL=9.2<>37
cluster 1(N=66) has 4 sub-cluster at 4 (35), ICL=0<>37
Model Refinement takes 0.2 mins(max 4: 0.067)
Fit Model 6 of (6/10) K=13->15 N=9682
EM 12 takes 0.033 mins, 8 iterations
cluster 10(N=435) has 2 sub-cluster at 2 (11), ICL=41<>40
split 10 into 2 clusters
cluster 7(N=909) has 3 sub-cluster at 3 (9), ICL=36<>40
cluster 8(N=58) has 2 sub-cluster at 2 (12), ICL=31<>40
cluster 1(N=122) has 3 sub-cluster at 3 (15), ICL=24<>40
cluster 3(N=73) has 4 sub-cluster at 5 (50), ICL=20<>40
cluster 6(N=392) has 2 sub-cluster at 3 (5), ICL=20<>40
cluster 12(N=169) has 6 sub-cluster at 7 (38), ICL=14<>40
cluster 2(N=310) has 7 sub-cluster at 8 (64), ICL=13<>40
cluster 9(N=338) has 7 sub-cluster at 8 (41), ICL=11<>40
cluster 11(N=86) has 4 sub-cluster at 4 (38), ICL=5.7<>40
cluster 1(N=122) has 3 sub-cluster at 3 (15), ICL=0<>40
Model Refinement takes 0.28 mins(max 4: 0.067)
Fit Model 7 of (6/10) K=12->13 N=9682
EM 13 takes 0.017 mins, 5 iterations
cluster 7(N=899) has 2 sub-cluster at 2 (17), ICL=57<>40
split 7 into 2 clusters
cluster 3(N=72) has 2 sub-cluster at 2 (10), ICL=30<>40
cluster 8(N=59) has 2 sub-cluster at 2 (7), ICL=30<>40
cluster 1(N=122) has 3 sub-cluster at 3 (15), ICL=24<>40
cluster 6(N=390) has 3 sub-cluster at 3 (32), ICL=21<>40
cluster 11(N=87) has 2 sub-cluster at 2 (6), ICL=20<>40
cluster 12(N=91) has 4 sub-cluster at 4 (35), ICL=19<>40
cluster 13(N=165) has 5 sub-cluster at 6 (39), ICL=14<>40
cluster 9(N=335) has 7 sub-cluster at 8 (27), ICL=12<>40
cluster 10(N=375) has 6 sub-cluster at 6 (12), ICL=11<>40
cluster 2(N=307) has 8 sub-cluster at 8 (41), ICL=10<>40
cluster 1(N=122) has 3 sub-cluster at 3 (15), ICL=0<>40
Model Refinement takes 0.28 mins(max 4: 0.067)
Fit Model 8 of (6/10) K=13->14 N=9682
EM 14 takes 0.017 mins, 3 iterations
cluster 9(N=60) has 2 sub-cluster at 2 (10), ICL=31<>40
cluster 1(N=122) has 3 sub-cluster at 3 (15), ICL=24<>40
cluster 12(N=86) has 4 sub-cluster at 4 (18), ICL=23<>40
cluster 6(N=389) has 5 sub-cluster at 6 (58), ICL=20<>40
cluster 14(N=164) has 5 sub-cluster at 5 (46), ICL=20<>40
cluster 3(N=72) has 3 sub-cluster at 4 (29), ICL=19<>40
cluster 13(N=94) has 5 sub-cluster at 5 (44), ICL=17<>40
cluster 11(N=376) has 7 sub-cluster at 8 (31), ICL=12<>40
cluster 10(N=332) has 6 sub-cluster at 7 (31), ICL=11<>40
cluster 2(N=308) has 6 sub-cluster at 6 (58), ICL=11<>40
cluster 7(N=401) has 7 sub-cluster at 8 (28), ICL=0.96<>40
cluster 1(N=122) has 3 sub-cluster at 3 (15), ICL=0<>40
Model Refinement takes 0.32 mins(max 4: 0.067)
Fit Model 9 of (6/10) K=14->14 N=9682
EM 14 takes 0 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.6 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted