Till Soerensen
| Snapshot Date: 2025-12-29 13:45 -0500 (Mon, 29 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_22 |
| git_last_commit: 3c4237c |
| git_last_commit_date: 2025-10-29 10:24:29 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-01-01 11:58 -0500 (Thu, 01 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4883 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1051/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.42.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-12-30 02:58:49 -0000 (Tue, 30 Dec 2025) |
| EndedAt: 2025-12-30 03:03:15 -0000 (Tue, 30 Dec 2025) |
| EllapsedTime: 266.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
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* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=162<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 11 iterations
cluster 2(N=75) has 3 sub-cluster at 3 (7), ICL=89<>30
split 2 into 3 clusters
cluster 1(N=227) has 4 sub-cluster at 4 (13), ICL=33<>30
split 1 into 4 clusters
cluster 1(N=227) has 4 sub-cluster at 4 (13), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->7 N=605
EM 7 takes 0 mins, 26 iterations
cluster 5(N=80) has 3 sub-cluster at 3 (19), ICL=25<>34
cluster 7(N=25) has 2 sub-cluster at 2 (100), ICL=14<>34
cluster 3(N=99) has 2 sub-cluster at 3 (37), ICL=10<>34
cluster 1(N=319) has 8 sub-cluster at 8 (41), ICL=7.9<>34
cluster 2(N=18) has 2 sub-cluster at 2 (80), ICL=7<>34
cluster 6(N=60) has 2 sub-cluster at 2 (6), ICL=5.9<>34
cluster 4(N=46) has 2 sub-cluster at 2 (100), ICL=2.3<>34
cluster 1(N=319) has 8 sub-cluster at 8 (41), ICL=0<>34
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=7->7 N=1210
EM 7 takes 0 mins, 10 iterations
cluster 7(N=56) has 6 sub-cluster at 6 (42), ICL=39<>37
split 7 into 6 clusters
cluster 2(N=29) has 2 sub-cluster at 2 (10), ICL=21<>37
cluster 5(N=134) has 3 sub-cluster at 3 (45), ICL=19<>37
cluster 4(N=77) has 5 sub-cluster at 5 (14), ICL=16<>37
cluster 6(N=117) has 7 sub-cluster at 7 (19), ICL=15<>37
cluster 3(N=239) has 5 sub-cluster at 6 (60), ICL=11<>37
cluster 2(N=29) has 2 sub-cluster at 2 (10), ICL=0<>37
Model Refinement takes 0.12 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=7->12 N=2420
EM 9 takes 0.017 mins, 21 iterations
cluster 2(N=58) has 3 sub-cluster at 3 (6), ICL=57<>41
split 2 into 3 clusters
cluster 7(N=54) has 2 sub-cluster at 2 (8), ICL=20<>41
cluster 4(N=149) has 6 sub-cluster at 6 (29), ICL=11<>41
cluster 6(N=203) has 6 sub-cluster at 8 (32), ICL=11<>41
cluster 5(N=266) has 2 sub-cluster at 2 (11), ICL=10<>41
cluster 8(N=23) has 2 sub-cluster at 2 (9), ICL=9.7<>41
cluster 3(N=729) has 3 sub-cluster at 3 (12), ICL=6.1<>41
cluster 9(N=48) has 3 sub-cluster at 3 (17), ICL=5.5<>41
cluster 2(N=58) has 3 sub-cluster at 3 (6), ICL=0<>41
Model Refinement takes 0.17 mins(max 1: 0.033)
Fit Model 5 of (6/10) K=9->11 N=4841
EM 11 takes 0.017 mins, 19 iterations
cluster 9(N=119) has 2 sub-cluster at 2 (5), ICL=32<>45
cluster 6(N=274) has 3 sub-cluster at 3 (6), ICL=30<>45
cluster 8(N=456) has 3 sub-cluster at 3 (13), ICL=25<>45
cluster 2(N=68) has 5 sub-cluster at 5 (16), ICL=21<>45
cluster 7(N=543) has 2 sub-cluster at 2 (7), ICL=9.8<>45
cluster 3(N=45) has 2 sub-cluster at 2 (6), ICL=9.7<>45
cluster 10(N=45) has 2 sub-cluster at 2 (15), ICL=5.1<>45
cluster 11(N=86) has 2 sub-cluster at 3 (46), ICL=2.2<>45
cluster 2(N=68) has 5 sub-cluster at 5 (16), ICL=0<>45
Model Refinement takes 0.23 mins(max 5: 0.067)
Fit Model 6 of (6/10) K=11->11 N=9682
EM 11 takes 0.033 mins, 22 iterations
cluster 6(N=559) has 3 sub-cluster at 3 (9), ICL=50<>48
split 6 into 3 clusters
cluster 9(N=130) has 2 sub-cluster at 2 (8), ICL=35<>48
cluster 2(N=125) has 2 sub-cluster at 2 (11), ICL=29<>48
cluster 8(N=916) has 2 sub-cluster at 2 (7), ICL=24<>48
cluster 7(N=1109) has 2 sub-cluster at 2 (5), ICL=17<>48
cluster 3(N=73) has 5 sub-cluster at 6 (57), ICL=11<>48
cluster 5(N=3359) has 3 sub-cluster at 3 (12), ICL=10<>48
cluster 11(N=244) has 7 sub-cluster at 8 (32), ICL=5.3<>48
cluster 2(N=125) has 2 sub-cluster at 2 (11), ICL=0<>48
Model Refinement takes 0.3 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=11->13 N=9682
EM 13 takes 0.017 mins, 11 iterations
cluster 10(N=904) has 3 sub-cluster at 3 (8), ICL=47<>48
cluster 4(N=50) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 11(N=103) has 2 sub-cluster at 2 (5), ICL=31<>48
cluster 2(N=125) has 2 sub-cluster at 2 (10), ICL=29<>48
cluster 9(N=1109) has 2 sub-cluster at 2 (5), ICL=18<>48
cluster 5(N=3572) has 4 sub-cluster at 4 (7), ICL=18<>48
cluster 3(N=72) has 3 sub-cluster at 5 (25), ICL=17<>48
cluster 8(N=85) has 2 sub-cluster at 2 (8), ICL=14<>48
cluster 6(N=170) has 7 sub-cluster at 8 (56), ICL=12<>48
cluster 7(N=380) has 5 sub-cluster at 5 (26), ICL=11<>48
cluster 13(N=250) has 3 sub-cluster at 4 (14), ICL=7.6<>48
cluster 12(N=150) has 5 sub-cluster at 5 (28), ICL=3.5<>48
cluster 2(N=125) has 2 sub-cluster at 2 (10), ICL=0<>48
Model Refinement takes 0.33 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=13->13 N=9682
EM 13 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.4 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=147<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=88) has 2 sub-cluster at 2 (6), ICL=109<>25
split 2 into 2 clusters
cluster 1(N=215) has 5 sub-cluster at 5 (45), ICL=26<>25
split 1 into 5 clusters
cluster 1(N=215) has 5 sub-cluster at 5 (45), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->7 N=605
EM 7 takes 0 mins, 50 iterations
cluster 6(N=128) has 2 sub-cluster at 2 (5), ICL=86<>28
split 6 into 2 clusters
cluster 1(N=42) has 3 sub-cluster at 4 (7), ICL=8.4<>28
cluster 4(N=15) has 2 sub-cluster at 2 (100), ICL=6<>28
cluster 3(N=354) has 8 sub-cluster at 8 (24), ICL=4.7<>28
cluster 2(N=32) has 3 sub-cluster at 3 (52), ICL=4<>28
cluster 1(N=42) has 3 sub-cluster at 4 (7), ICL=0<>28
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=7->8 N=1210
EM 8 takes 0 mins, 50 iterations
cluster 6(N=105) has 3 sub-cluster at 3 (8), ICL=49<>31
split 6 into 3 clusters
cluster 8(N=137) has 2 sub-cluster at 2 (6), ICL=32<>31
split 8 into 2 clusters
cluster 7(N=159) has 5 sub-cluster at 5 (32), ICL=26<>31
cluster 4(N=37) has 2 sub-cluster at 2 (11), ICL=11<>31
cluster 1(N=113) has 5 sub-cluster at 6 (22), ICL=9.9<>31
cluster 5(N=10) has 2 sub-cluster at 2 (10), ICL=9.8<>31
cluster 3(N=591) has 8 sub-cluster at 8 (25), ICL=3<>31
cluster 2(N=304) has 7 sub-cluster at 8 (19), ICL=1.5<>31
cluster 1(N=113) has 5 sub-cluster at 6 (22), ICL=0<>31
Model Refinement takes 0.13 mins(max 2: 0.033)
Fit Model 4 of (6/10) K=8->11 N=2420
EM 11 takes 0.017 mins, 33 iterations
cluster 6(N=24) has 2 sub-cluster at 2 (100), ICL=39<>34
split 6 into 2 clusters
cluster 5(N=56) has 2 sub-cluster at 2 (5), ICL=33<>34
cluster 11(N=26) has 2 sub-cluster at 2 (5), ICL=27<>34
cluster 7(N=121) has 3 sub-cluster at 5 (17), ICL=21<>34
cluster 10(N=209) has 4 sub-cluster at 4 (33), ICL=16<>34
cluster 8(N=82) has 3 sub-cluster at 3 (27), ICL=15<>34
cluster 9(N=282) has 4 sub-cluster at 5 (23), ICL=4.6<>34
cluster 4(N=83) has 2 sub-cluster at 2 (20), ICL=4.2<>34
cluster 1(N=522) has 6 sub-cluster at 7 (39), ICL=2.6<>34
cluster 1(N=522) has 6 sub-cluster at 7 (39), ICL=0<>34
Model Refinement takes 0.17 mins(max 2: 0.033)
Fit Model 5 of (6/10) K=11->12 N=4841
EM 11 takes 0.017 mins, 18 iterations
cluster 5(N=97) has 2 sub-cluster at 2 (6), ICL=69<>37
split 5 into 2 clusters
cluster 9(N=530) has 2 sub-cluster at 2 (6), ICL=51<>37
split 9 into 2 clusters
cluster 7(N=296) has 3 sub-cluster at 3 (7), ICL=32<>37
cluster 6(N=34) has 2 sub-cluster at 2 (12), ICL=28<>37
cluster 10(N=445) has 5 sub-cluster at 5 (24), ICL=25<>37
cluster 4(N=139) has 4 sub-cluster at 5 (42), ICL=22<>37
cluster 8(N=165) has 8 sub-cluster at 8 (39), ICL=21<>37
cluster 11(N=24) has 2 sub-cluster at 2 (100), ICL=4.4<>37
cluster 4(N=139) has 4 sub-cluster at 5 (42), ICL=0<>37
Model Refinement takes 0.25 mins(max 2: 0.05)
Fit Model 6 of (6/10) K=11->13 N=9682
EM 13 takes 0.017 mins, 17 iterations
cluster 8(N=558) has 2 sub-cluster at 2 (13), ICL=60<>40
split 8 into 2 clusters
cluster 12(N=916) has 3 sub-cluster at 3 (29), ICL=56<>40
split 12 into 3 clusters
cluster 5(N=122) has 3 sub-cluster at 3 (14), ICL=24<>40
cluster 10(N=388) has 2 sub-cluster at 3 (6), ICL=18<>40
cluster 7(N=93) has 4 sub-cluster at 5 (19), ICL=12<>40
cluster 4(N=320) has 2 sub-cluster at 2 (9), ICL=10<>40
cluster 9(N=332) has 7 sub-cluster at 8 (26), ICL=9.6<>40
cluster 6(N=73) has 3 sub-cluster at 4 (19), ICL=7<>40
cluster 13(N=50) has 2 sub-cluster at 2 (100), ICL=1.4<>40
cluster 4(N=320) has 2 sub-cluster at 2 (9), ICL=0<>40
Model Refinement takes 0.37 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=13->16 N=9682
EM 16 takes 0.017 mins, 7 iterations
cluster 14(N=41) has 2 sub-cluster at 2 (100), ICL=57<>40
split 14 into 2 clusters
cluster 8(N=418) has 3 sub-cluster at 3 (8), ICL=28<>40
cluster 5(N=122) has 3 sub-cluster at 3 (14), ICL=24<>40
cluster 7(N=95) has 4 sub-cluster at 4 (45), ICL=24<>40
cluster 11(N=384) has 3 sub-cluster at 4 (19), ICL=24<>40
cluster 9(N=173) has 6 sub-cluster at 7 (28), ICL=16<>40
cluster 6(N=71) has 4 sub-cluster at 5 (11), ICL=15<>40
cluster 10(N=331) has 6 sub-cluster at 6 (19), ICL=12<>40
cluster 16(N=52) has 2 sub-cluster at 2 (9), ICL=10<>40
cluster 4(N=319) has 7 sub-cluster at 8 (25), ICL=4.2<>40
cluster 4(N=319) has 7 sub-cluster at 8 (25), ICL=0<>40
Model Refinement takes 0.42 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=16->17 N=9682
EM 17 takes 0.1 mins, 50 iterations
cluster 8(N=417) has 2 sub-cluster at 2 (6), ICL=26<>40
cluster 6(N=71) has 2 sub-cluster at 2 (100), ICL=26<>40
cluster 5(N=122) has 3 sub-cluster at 3 (14), ICL=24<>40
cluster 11(N=385) has 4 sub-cluster at 5 (57), ICL=21<>40
cluster 10(N=329) has 8 sub-cluster at 8 (42), ICL=14<>40
cluster 9(N=167) has 3 sub-cluster at 3 (43), ICL=14<>40
cluster 4(N=328) has 2 sub-cluster at 2 (12), ICL=13<>40
cluster 14(N=56) has 2 sub-cluster at 2 (13), ICL=13<>40
cluster 7(N=102) has 3 sub-cluster at 3 (24), ICL=12<>40
cluster 17(N=52) has 2 sub-cluster at 2 (9), ICL=10<>40
cluster 13(N=395) has 7 sub-cluster at 8 (29), ICL=1.1<>40
cluster 16(N=561) has 7 sub-cluster at 7 (39), ICL=0.73<>40
cluster 4(N=328) has 2 sub-cluster at 2 (12), ICL=0<>40
Model Refinement takes 0.42 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=17->17 N=9682
EM 17 takes 0.067 mins, 26 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 2.1 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted