Till Soerensen
| Snapshot Date: 2025-08-14 13:40 -0400 (Thu, 14 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_21 |
| git_last_commit: c20d14f |
| git_last_commit_date: 2025-04-15 10:48:52 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-08-18 11:47 -0400 (Mon, 18 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4824 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4566 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4604 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4545 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1040/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.40.0 (landing page) Till Soerensen
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.40.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-08-15 01:38:53 -0000 (Fri, 15 Aug 2025) |
| EndedAt: 2025-08-15 01:43:57 -0000 (Fri, 15 Aug 2025) |
| EllapsedTime: 304.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=143<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>26
Model Refinement takes 0.05 mins(max 1: 0.05)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 6 iterations
cluster 1(N=102) has 3 sub-cluster at 3 (5), ICL=114<>30
split 1 into 3 clusters
cluster 2(N=202) has 2 sub-cluster at 2 (100), ICL=94<>30
split 2 into 2 clusters
cluster 1(N=102) has 3 sub-cluster at 3 (5), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->5 N=605
EM 4 takes 0 mins, 11 iterations
cluster 4(N=410) has 3 sub-cluster at 3 (46), ICL=41<>34
split 4 into 3 clusters
cluster 3(N=54) has 3 sub-cluster at 3 (13), ICL=30<>34
cluster 1(N=77) has 2 sub-cluster at 2 (7), ICL=15<>34
cluster 2(N=67) has 5 sub-cluster at 5 (61), ICL=14<>34
cluster 1(N=77) has 2 sub-cluster at 2 (7), ICL=0<>34
Model Refinement takes 0.05 mins(max 2: 0.017)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 5 takes 0 mins, 50 iterations
cluster 3(N=114) has 2 sub-cluster at 2 (9), ICL=60<>37
split 3 into 2 clusters
cluster 5(N=80) has 3 sub-cluster at 3 (6), ICL=39<>37
split 5 into 3 clusters
cluster 2(N=147) has 3 sub-cluster at 3 (11), ICL=14<>37
cluster 1(N=117) has 6 sub-cluster at 6 (21), ICL=13<>37
cluster 1(N=117) has 6 sub-cluster at 6 (21), ICL=0<>37
Model Refinement takes 0.12 mins(max 2: 0.033)
Fit Model 4 of (6/10) K=5->8 N=2420
EM 8 takes 0 mins, 9 iterations
cluster 1(N=256) has 2 sub-cluster at 2 (7), ICL=63<>41
split 1 into 2 clusters
cluster 2(N=266) has 2 sub-cluster at 2 (8), ICL=29<>41
cluster 4(N=104) has 2 sub-cluster at 2 (16), ICL=20<>41
cluster 6(N=49) has 3 sub-cluster at 3 (21), ICL=20<>41
cluster 3(N=127) has 4 sub-cluster at 4 (16), ICL=15<>41
cluster 7(N=72) has 3 sub-cluster at 4 (25), ICL=12<>41
cluster 8(N=12) has 2 sub-cluster at 2 (100), ICL=1<>41
cluster 1(N=256) has 2 sub-cluster at 2 (7), ICL=0<>41
Model Refinement takes 0.2 mins(max 5: 0.083)
Fit Model 5 of (6/10) K=8->9 N=4841
EM 9 takes 0.017 mins, 16 iterations
cluster 2(N=26) has 2 sub-cluster at 2 (100), ICL=74<>45
split 2 into 2 clusters
cluster 5(N=203) has 2 sub-cluster at 2 (19), ICL=35<>45
cluster 7(N=82) has 3 sub-cluster at 3 (33), ICL=33<>45
cluster 3(N=573) has 2 sub-cluster at 2 (6), ICL=32<>45
cluster 8(N=159) has 5 sub-cluster at 6 (52), ICL=20<>45
cluster 9(N=27) has 3 sub-cluster at 4 (53), ICL=20<>45
cluster 4(N=279) has 3 sub-cluster at 3 (14), ICL=19<>45
cluster 1(N=467) has 3 sub-cluster at 3 (21), ICL=18<>45
cluster 1(N=467) has 3 sub-cluster at 3 (21), ICL=0<>45
Model Refinement takes 0.23 mins(max 6: 0.083)
Fit Model 6 of (6/10) K=9->10 N=9682
EM 10 takes 0 mins, 5 iterations
cluster 5(N=556) has 3 sub-cluster at 3 (11), ICL=66<>48
split 5 into 3 clusters
cluster 8(N=154) has 4 sub-cluster at 4 (16), ICL=43<>48
cluster 6(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 4(N=1120) has 2 sub-cluster at 2 (20), ICL=28<>48
cluster 1(N=910) has 4 sub-cluster at 4 (12), ICL=15<>48
cluster 2(N=45) has 4 sub-cluster at 4 (47), ICL=12<>48
cluster 9(N=315) has 2 sub-cluster at 2 (8), ICL=7.4<>48
cluster 10(N=75) has 2 sub-cluster at 3 (6), ICL=0.13<>48
cluster 1(N=910) has 4 sub-cluster at 4 (12), ICL=0<>48
Model Refinement takes 0.32 mins(max 7: 0.1)
Fit Model 7 of (6/10) K=10->12 N=9682
EM 12 takes 0 mins, 5 iterations
cluster 10(N=156) has 4 sub-cluster at 4 (16), ICL=43<>48
cluster 8(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 4(N=1121) has 2 sub-cluster at 2 (12), ICL=26<>48
cluster 7(N=88) has 2 sub-cluster at 2 (7), ICL=18<>48
cluster 1(N=897) has 4 sub-cluster at 4 (14), ICL=16<>48
cluster 2(N=45) has 3 sub-cluster at 4 (13), ICL=15<>48
cluster 6(N=178) has 5 sub-cluster at 7 (53), ICL=14<>48
cluster 12(N=74) has 3 sub-cluster at 4 (44), ICL=13<>48
cluster 5(N=362) has 7 sub-cluster at 8 (25), ICL=10<>48
cluster 3(N=13) has 2 sub-cluster at 2 (17), ICL=7.9<>48
cluster 11(N=308) has 2 sub-cluster at 2 (8), ICL=7.2<>48
cluster 1(N=897) has 4 sub-cluster at 4 (14), ICL=0<>48
Model Refinement takes 0.38 mins(max 9: 0.1)
Fit Model 8 of (6/10) K=12->12 N=9682
EM 12 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.5 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=150<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=0<>22
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 6 iterations
cluster 1(N=103) has 3 sub-cluster at 3 (6), ICL=120<>25
split 1 into 3 clusters
cluster 2(N=201) has 2 sub-cluster at 2 (8), ICL=19<>25
cluster 1(N=103) has 3 sub-cluster at 3 (6), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 7 iterations
cluster 4(N=402) has 2 sub-cluster at 2 (5), ICL=37<>28
split 4 into 2 clusters
cluster 2(N=62) has 3 sub-cluster at 3 (7), ICL=35<>28
split 2 into 3 clusters
cluster 3(N=63) has 3 sub-cluster at 4 (37), ICL=17<>28
cluster 1(N=83) has 3 sub-cluster at 3 (25), ICL=13<>28
cluster 1(N=83) has 3 sub-cluster at 3 (25), ICL=0<>28
Model Refinement takes 0.083 mins(max 2: 0.033)
Fit Model 3 of (6/10) K=4->7 N=1210
EM 7 takes 0.017 mins, 23 iterations
cluster 7(N=57) has 4 sub-cluster at 4 (42), ICL=74<>31
split 7 into 4 clusters
cluster 5(N=117) has 7 sub-cluster at 8 (32), ICL=22<>31
cluster 1(N=138) has 7 sub-cluster at 7 (42), ICL=19<>31
cluster 2(N=70) has 3 sub-cluster at 3 (24), ICL=19<>31
cluster 4(N=53) has 2 sub-cluster at 2 (10), ICL=3.9<>31
cluster 3(N=21) has 2 sub-cluster at 2 (100), ICL=3.2<>31
cluster 1(N=138) has 7 sub-cluster at 7 (42), ICL=0<>31
Model Refinement takes 0.12 mins(max 5: 0.033)
Fit Model 4 of (6/10) K=7->10 N=2420
EM 9 takes 0 mins, 10 iterations
cluster 7(N=16) has 2 sub-cluster at 2 (100), ICL=35<>34
split 7 into 2 clusters
cluster 1(N=287) has 5 sub-cluster at 5 (21), ICL=34<>34
split 1 into 5 clusters
cluster 5(N=222) has 2 sub-cluster at 2 (5), ICL=32<>34
cluster 2(N=141) has 8 sub-cluster at 8 (24), ICL=27<>34
cluster 4(N=95) has 8 sub-cluster at 8 (24), ICL=18<>34
cluster 3(N=33) has 2 sub-cluster at 2 (7), ICL=13<>34
cluster 9(N=65) has 3 sub-cluster at 3 (24), ICL=10<>34
cluster 8(N=28) has 2 sub-cluster at 2 (7), ICL=8<>34
cluster 1(N=287) has 5 sub-cluster at 5 (21), ICL=0<>34
Model Refinement takes 0.22 mins(max 6: 0.1)
Fit Model 5 of (6/10) K=9->14 N=4841
EM 12 takes 0.017 mins, 17 iterations
cluster 8(N=460) has 2 sub-cluster at 2 (19), ICL=85<>37
split 8 into 2 clusters
cluster 6(N=47) has 2 sub-cluster at 2 (7), ICL=27<>37
cluster 11(N=62) has 5 sub-cluster at 5 (10), ICL=26<>37
cluster 7(N=193) has 7 sub-cluster at 7 (41), ICL=21<>37
cluster 5(N=231) has 3 sub-cluster at 3 (9), ICL=19<>37
cluster 4(N=79) has 3 sub-cluster at 3 (47), ICL=19<>37
cluster 1(N=304) has 6 sub-cluster at 7 (84), ICL=16<>37
cluster 12(N=168) has 6 sub-cluster at 8 (24), ICL=14<>37
cluster 10(N=40) has 3 sub-cluster at 3 (9), ICL=12<>37
cluster 3(N=67) has 3 sub-cluster at 4 (18), ICL=7.5<>37
cluster 2(N=263) has 6 sub-cluster at 7 (49), ICL=7.5<>37
cluster 1(N=304) has 6 sub-cluster at 7 (84), ICL=0<>37
Model Refinement takes 0.33 mins(max 9: 0.1)
Fit Model 6 of (6/10) K=12->13 N=9682
EM 13 takes 0.017 mins, 16 iterations
cluster 8(N=903) has 2 sub-cluster at 2 (28), ICL=59<>40
split 8 into 2 clusters
cluster 5(N=506) has 2 sub-cluster at 2 (10), ICL=49<>40
split 5 into 2 clusters
cluster 7(N=392) has 2 sub-cluster at 2 (12), ICL=44<>40
split 7 into 2 clusters
cluster 9(N=50) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 10(N=6225) has 4 sub-cluster at 4 (8), ICL=40<>40
cluster 12(N=121) has 4 sub-cluster at 4 (38), ICL=27<>40
cluster 4(N=138) has 3 sub-cluster at 4 (25), ICL=26<>40
cluster 6(N=91) has 3 sub-cluster at 4 (10), ICL=20<>40
cluster 3(N=40) has 2 sub-cluster at 2 (22), ICL=12<>40
cluster 13(N=314) has 2 sub-cluster at 2 (11), ICL=11<>40
cluster 11(N=72) has 2 sub-cluster at 3 (13), ICL=3.4<>40
cluster 3(N=40) has 2 sub-cluster at 2 (22), ICL=0<>40
Model Refinement takes 0.37 mins(max 10: 0.1)
Fit Model 7 of (6/10) K=13->16 N=9682
EM 16 takes 0 mins, 5 iterations
cluster 3(N=39) has 3 sub-cluster at 3 (60), ICL=41<>40
split 3 into 3 clusters
cluster 15(N=121) has 3 sub-cluster at 3 (22), ICL=25<>40
cluster 4(N=139) has 2 sub-cluster at 3 (18), ICL=21<>40
cluster 7(N=88) has 2 sub-cluster at 2 (9), ICL=20<>40
cluster 8(N=226) has 7 sub-cluster at 8 (19), ICL=16<>40
cluster 5(N=172) has 4 sub-cluster at 5 (33), ICL=13<>40
cluster 16(N=311) has 2 sub-cluster at 2 (9), ICL=12<>40
cluster 12(N=51) has 2 sub-cluster at 2 (12), ICL=11<>40
cluster 10(N=407) has 2 sub-cluster at 2 (13), ICL=11<>40
cluster 9(N=212) has 8 sub-cluster at 8 (35), ICL=10<>40
cluster 6(N=375) has 5 sub-cluster at 5 (17), ICL=5.7<>40
cluster 14(N=72) has 2 sub-cluster at 3 (13), ICL=3.4<>40
cluster 3(N=39) has 3 sub-cluster at 3 (60), ICL=0<>40
Model Refinement takes 0.43 mins(max 13: 0.1)
Fit Model 8 of (6/10) K=16->18 N=9682
EM 17 takes 0.017 mins, 5 iterations
cluster 15(N=72) has 2 sub-cluster at 2 (8), ICL=64<>40
split 15 into 2 clusters
cluster 3(N=8) has 2 sub-cluster at 2 (100), ICL=32<>40
cluster 16(N=121) has 3 sub-cluster at 3 (23), ICL=24<>40
cluster 8(N=88) has 2 sub-cluster at 2 (13), ICL=20<>40
cluster 5(N=143) has 2 sub-cluster at 2 (12), ICL=20<>40
cluster 7(N=380) has 5 sub-cluster at 5 (31), ICL=19<>40
cluster 6(N=168) has 5 sub-cluster at 6 (62), ICL=18<>40
cluster 9(N=223) has 2 sub-cluster at 2 (8), ICL=15<>40
cluster 10(N=217) has 8 sub-cluster at 8 (39), ICL=13<>40
cluster 17(N=311) has 2 sub-cluster at 2 (9), ICL=12<>40
cluster 11(N=406) has 3 sub-cluster at 3 (17), ICL=11<>40
cluster 13(N=51) has 2 sub-cluster at 2 (12), ICL=11<>40
cluster 3(N=8) has 2 sub-cluster at 2 (100), ICL=0<>40
Model Refinement takes 0.42 mins(max 14: 0.083)
Fit Model 9 of (6/10) K=17->18 N=9682
EM 17 takes 0.017 mins, 4 iterations
cluster 3(N=8) has 2 sub-cluster at 2 (100), ICL=32<>40
cluster 16(N=121) has 3 sub-cluster at 3 (24), ICL=24<>40
cluster 5(N=144) has 3 sub-cluster at 3 (38), ICL=21<>40
cluster 8(N=86) has 3 sub-cluster at 3 (11), ICL=21<>40
cluster 9(N=219) has 4 sub-cluster at 4 (24), ICL=19<>40
cluster 7(N=383) has 4 sub-cluster at 4 (18), ICL=17<>40
cluster 6(N=164) has 7 sub-cluster at 8 (32), ICL=15<>40
cluster 17(N=311) has 2 sub-cluster at 2 (9), ICL=12<>40
cluster 10(N=224) has 6 sub-cluster at 7 (57), ICL=11<>40
cluster 13(N=51) has 2 sub-cluster at 2 (12), ICL=11<>40
cluster 11(N=405) has 4 sub-cluster at 4 (31), ICL=6.7<>40
cluster 15(N=72) has 2 sub-cluster at 3 (13), ICL=3.4<>40
cluster 1(N=579) has 8 sub-cluster at 8 (35), ICL=0.23<>40
cluster 1(N=579) has 8 sub-cluster at 8 (35), ICL=0<>40
Model Refinement takes 0.42 mins(max 14: 0.1)
Fit Model 10 of (6/10) K=17->17 N=9682
EM 17 takes 0 mins, 3 iterations
Process completed at10
Major Iteration (Trans) (6/4) takes 2.6 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted