Till Soerensen
| Snapshot Date: 2025-10-02 13:40 -0400 (Thu, 02 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_21 |
| git_last_commit: c20d14f |
| git_last_commit_date: 2025-04-15 10:48:52 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-10-06 11:41 -0400 (Mon, 06 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4832 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4613 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4554 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4585 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1040/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.40.0 (landing page) Till Soerensen
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.40.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-10-03 01:51:53 -0000 (Fri, 03 Oct 2025) |
| EndedAt: 2025-10-03 01:55:59 -0000 (Fri, 03 Oct 2025) |
| EllapsedTime: 246.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=156<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=102) has 3 sub-cluster at 3 (6), ICL=117<>30
split 2 into 3 clusters
cluster 1(N=200) has 4 sub-cluster at 4 (20), ICL=29<>30
cluster 1(N=200) has 4 sub-cluster at 4 (20), ICL=0<>30
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 9 iterations
cluster 1(N=447) has 2 sub-cluster at 2 (9), ICL=111<>34
split 1 into 2 clusters
cluster 4(N=23) has 2 sub-cluster at 2 (100), ICL=49<>34
split 4 into 2 clusters
cluster 2(N=56) has 2 sub-cluster at 3 (19), ICL=24<>34
cluster 3(N=80) has 2 sub-cluster at 2 (5), ICL=9<>34
cluster 1(N=447) has 2 sub-cluster at 2 (9), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 5 takes 0 mins, 5 iterations
cluster 2(N=86) has 2 sub-cluster at 2 (14), ICL=64<>37
split 2 into 2 clusters
cluster 1(N=841) has 2 sub-cluster at 2 (7), ICL=32<>37
cluster 3(N=102) has 2 sub-cluster at 2 (100), ICL=23<>37
cluster 4(N=139) has 2 sub-cluster at 2 (9), ICL=21<>37
cluster 5(N=50) has 5 sub-cluster at 5 (9), ICL=10<>37
cluster 1(N=841) has 2 sub-cluster at 2 (7), ICL=0<>37
Model Refinement takes 0.1 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 8 iterations
cluster 6(N=99) has 8 sub-cluster at 8 (75), ICL=39<>41
cluster 2(N=31) has 2 sub-cluster at 2 (17), ICL=29<>41
cluster 4(N=248) has 2 sub-cluster at 2 (10), ICL=25<>41
cluster 3(N=135) has 4 sub-cluster at 4 (19), ICL=19<>41
cluster 5(N=274) has 2 sub-cluster at 2 (7), ICL=16<>41
cluster 2(N=31) has 2 sub-cluster at 2 (17), ICL=0<>41
Model Refinement takes 0.2 mins(max 1: 0.1)
Fit Model 5 of (6/10) K=6->6 N=4841
EM 6 takes 0 mins, 5 iterations
cluster 4(N=505) has 2 sub-cluster at 2 (6), ICL=94<>45
split 4 into 2 clusters
cluster 1(N=3250) has 3 sub-cluster at 3 (10), ICL=67<>45
split 1 into 3 clusters
cluster 5(N=581) has 2 sub-cluster at 2 (7), ICL=44<>45
cluster 3(N=288) has 3 sub-cluster at 3 (9), ICL=35<>45
cluster 6(N=185) has 6 sub-cluster at 6 (45), ICL=26<>45
cluster 2(N=64) has 3 sub-cluster at 3 (9), ICL=13<>45
cluster 1(N=3250) has 3 sub-cluster at 3 (10), ICL=0<>45
Model Refinement takes 0.22 mins(max 1: 0.1)
Fit Model 6 of (6/10) K=6->9 N=9682
EM 9 takes 0.017 mins, 10 iterations
cluster 1(N=378) has 2 sub-cluster at 2 (5), ICL=129<>48
split 1 into 2 clusters
cluster 5(N=563) has 3 sub-cluster at 3 (8), ICL=63<>48
split 5 into 3 clusters
cluster 8(N=1121) has 2 sub-cluster at 2 (12), ICL=51<>48
split 8 into 2 clusters
cluster 4(N=153) has 4 sub-cluster at 4 (17), ICL=42<>48
cluster 9(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 7(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 6(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 1(N=378) has 2 sub-cluster at 2 (5), ICL=0<>48
Model Refinement takes 0.4 mins(max 2: 0.12)
Fit Model 7 of (6/10) K=9->13 N=9682
EM 13 takes 0 mins, 8 iterations
cluster 13(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 10(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 9(N=898) has 3 sub-cluster at 3 (9), ICL=29<>48
cluster 5(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 8(N=90) has 3 sub-cluster at 3 (12), ICL=20<>48
cluster 12(N=404) has 2 sub-cluster at 3 (4), ICL=18<>48
cluster 6(N=364) has 7 sub-cluster at 8 (15), ICL=14<>48
cluster 2(N=74) has 3 sub-cluster at 5 (20), ICL=13<>48
cluster 7(N=180) has 4 sub-cluster at 4 (34), ICL=6.3<>48
cluster 1(N=310) has 8 sub-cluster at 8 (42), ICL=3.8<>48
cluster 1(N=310) has 8 sub-cluster at 8 (42), ICL=0<>48
Model Refinement takes 0.47 mins(max 3: 0.1)
Fit Model 8 of (6/10) K=13->13 N=9682
EM 13 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.6 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=169<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 1(N=104) has 3 sub-cluster at 3 (9), ICL=110<>25
split 1 into 3 clusters
cluster 2(N=198) has 2 sub-cluster at 2 (6), ICL=23<>25
cluster 1(N=104) has 3 sub-cluster at 3 (9), ICL=0<>25
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 15 iterations
cluster 3(N=49) has 2 sub-cluster at 2 (100), ICL=32<>28
split 3 into 2 clusters
cluster 1(N=53) has 2 sub-cluster at 2 (23), ICL=31<>28
split 1 into 2 clusters
cluster 2(N=82) has 5 sub-cluster at 5 (12), ICL=22<>28
cluster 4(N=425) has 7 sub-cluster at 7 (14), ICL=6.2<>28
cluster 1(N=53) has 2 sub-cluster at 2 (23), ICL=0<>28
Model Refinement takes 0.067 mins(max 4: 0.033)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 18 iterations
cluster 5(N=127) has 2 sub-cluster at 2 (5), ICL=38<>31
split 5 into 2 clusters
cluster 4(N=25) has 2 sub-cluster at 2 (8), ICL=28<>31
cluster 3(N=152) has 6 sub-cluster at 6 (33), ICL=20<>31
cluster 2(N=50) has 6 sub-cluster at 6 (18), ICL=19<>31
cluster 1(N=74) has 2 sub-cluster at 2 (12), ICL=6.5<>31
cluster 6(N=788) has 2 sub-cluster at 2 (7), ICL=3.7<>31
cluster 1(N=74) has 2 sub-cluster at 2 (12), ICL=0<>31
Model Refinement takes 0.12 mins(max 6: 0.033)
Fit Model 4 of (6/10) K=6->7 N=2420
EM 7 takes 0 mins, 8 iterations
cluster 6(N=9) has 2 sub-cluster at 2 (100), ICL=55<>34
split 6 into 2 clusters
cluster 4(N=50) has 2 sub-cluster at 2 (5), ICL=41<>34
split 4 into 2 clusters
cluster 3(N=290) has 2 sub-cluster at 2 (5), ICL=26<>34
cluster 1(N=131) has 3 sub-cluster at 3 (11), ICL=24<>34
cluster 2(N=107) has 4 sub-cluster at 4 (26), ICL=23<>34
cluster 5(N=212) has 5 sub-cluster at 5 (34), ICL=16<>34
cluster 1(N=131) has 3 sub-cluster at 3 (11), ICL=0<>34
Model Refinement takes 0.2 mins(max 7: 0.083)
Fit Model 5 of (6/10) K=7->9 N=4841
EM 8 takes 0 mins, 7 iterations
cluster 8(N=3239) has 3 sub-cluster at 3 (7), ICL=40<>37
split 8 into 3 clusters
cluster 3(N=567) has 2 sub-cluster at 2 (10), ICL=37<>37
cluster 4(N=84) has 5 sub-cluster at 5 (20), ICL=31<>37
cluster 2(N=196) has 4 sub-cluster at 4 (23), ICL=30<>37
cluster 1(N=268) has 3 sub-cluster at 3 (14), ICL=24<>37
cluster 7(N=23) has 2 sub-cluster at 2 (12), ICL=15<>37
cluster 6(N=459) has 7 sub-cluster at 7 (31), ICL=15<>37
cluster 1(N=268) has 3 sub-cluster at 3 (14), ICL=0<>37
Model Refinement takes 0.22 mins(max 8: 0.083)
Fit Model 6 of (6/10) K=8->10 N=9682
EM 10 takes 0 mins, 9 iterations
cluster 1(N=562) has 3 sub-cluster at 3 (8), ICL=66<>40
split 1 into 3 clusters
cluster 6(N=916) has 3 sub-cluster at 3 (10), ICL=56<>40
split 6 into 3 clusters
cluster 4(N=157) has 4 sub-cluster at 4 (13), ICL=45<>40
split 4 into 4 clusters
cluster 2(N=392) has 3 sub-cluster at 3 (34), ICL=41<>40
split 2 into 3 clusters
cluster 3(N=1123) has 2 sub-cluster at 2 (6), ICL=40<>40
split 3 into 2 clusters
cluster 10(N=313) has 7 sub-cluster at 8 (39), ICL=9.5<>40
cluster 5(N=74) has 3 sub-cluster at 4 (16), ICL=7.9<>40
cluster 1(N=562) has 3 sub-cluster at 3 (8), ICL=0<>40
Model Refinement takes 0.42 mins(max 8: 0.1)
Fit Model 7 of (6/10) K=10->20 N=9682
EM 20 takes 0.017 mins, 8 iterations
cluster 17(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 10(N=22) has 2 sub-cluster at 2 (20), ICL=21<>40
cluster 3(N=78) has 2 sub-cluster at 2 (9), ICL=19<>40
cluster 11(N=22) has 2 sub-cluster at 2 (22), ICL=16<>40
cluster 2(N=182) has 7 sub-cluster at 8 (33), ICL=15<>40
cluster 4(N=225) has 7 sub-cluster at 8 (99), ICL=14<>40
cluster 9(N=88) has 3 sub-cluster at 4 (28), ICL=13<>40
cluster 1(N=357) has 8 sub-cluster at 8 (30), ICL=12<>40
cluster 6(N=137) has 7 sub-cluster at 7 (30), ICL=12<>40
cluster 13(N=73) has 3 sub-cluster at 4 (36), ICL=11<>40
cluster 5(N=116) has 4 sub-cluster at 4 (31), ICL=8.2<>40
cluster 16(N=52) has 2 sub-cluster at 2 (36), ICL=7.4<>40
cluster 20(N=308) has 7 sub-cluster at 8 (48), ICL=6.8<>40
cluster 14(N=383) has 8 sub-cluster at 8 (35), ICL=3.2<>40
cluster 8(N=559) has 7 sub-cluster at 8 (45), ICL=1.7<>40
cluster 1(N=357) has 8 sub-cluster at 8 (30), ICL=0<>40
Model Refinement takes 0.52 mins(max 18: 0.1)
Fit Model 8 of (6/10) K=20->20 N=9682
EM 20 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.7 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted