Multiple platform build/check report for BioC 3.20 - BUILD results for immApex on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4481
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4479
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4359
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4539
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for immApex on lconway

To the developers/maintainers of the immApex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immApex.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: immApex

Version: 1.0.4

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data immApex

StartedAt: 2024-11-19 17:16:06 -0500 (Tue, 19 Nov 2024)

EndedAt: 2024-11-19 17:18:38 -0500 (Tue, 19 Nov 2024)

EllapsedTime: 151.7 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data immApex
###
##############################################################################
##############################################################################


* checking for file ‘immApex/DESCRIPTION’ ... OK
* preparing ‘immApex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immApex.Rmd’ using rmarkdown
2024-11-19 17:18:03.102679: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
/Library/Python/3.9/site-packages/urllib3/__init__.py:34: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
  warnings.warn(

Quitting from lines 102-110 [unnamed-chunk-5] (immApex.Rmd)
Error: processing vignette 'immApex.Rmd' failed with diagnostics:
no applicable method for 'compile' applied to an object of class "c('keras.src.engine.functional.Functional', 'keras.src.engine.training.Model', 'keras.src.engine.base_layer.Layer', 'tensorflow.python.module.module.Module', 'tensorflow.python.trackable.autotrackable.AutoTrackable', 'tensorflow.python.trackable.base.Trackable', 'keras.src.utils.version_utils.LayerVersionSelector', 'keras.src.utils.version_utils.ModelVersionSelector', 'python.builtin.object')"
--- failed re-building ‘immApex.Rmd’

SUMMARY: processing the following file failed:
  ‘immApex.Rmd’

Error: Vignette re-building failed.
Execution halted