Multiple platform build/check report for BioC 3.22 - BUILD results for igblastr on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4615
merida1	macOS 12.7.6 Monterey	x86_64	4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble"	4610
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"	4598
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4668
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for igblastr on kjohnson1

To the developers/maintainers of the igblastr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/igblastr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: igblastr

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr

StartedAt: 2025-11-17 22:05:12 -0500 (Mon, 17 Nov 2025)

EndedAt: 2025-11-17 22:05:32 -0500 (Mon, 17 Nov 2025)

EllapsedTime: 20.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr
###
##############################################################################
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* checking for file ‘igblastr/DESCRIPTION’ ... OK
* preparing ‘igblastr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘igblastr_overview.Rmd’ using rmarkdown
trying URL 'ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ncbi-igblast-1.22.0+.dmg'
Content type 'unknown' length 39354965 bytes (37.5 MB)
==================================================

Quitting from igblastr_overview.Rmd:112-115 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `stop_on_invalid_igblast_root()`:
! Anomaly: Invalid IgBLAST installation at
  '/Users/biocbuild/Library/Caches/org.R-project.R/R/igblastr/igblast_roots/1.22.0'.
  '/Users/biocbuild/Library/Caches/org.R-project.R/R/igblastr/igblast_roots/1.22.0/bin/igblastn
  -version' does not work.
---
Backtrace:
    ▆
 1. └─igblastr::install_igblast()
 2.   └─igblastr:::set_internal_igblast_root(version)
 3.     └─igblastr:::.check_igblast_installation(igblast_root)
 4.       └─igblastr:::get_igblast_exe(...)
 5.         └─igblastr:::stop_on_invalid_igblast_root(igblast_root, details)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'igblastr_overview.Rmd' failed with diagnostics:
Anomaly: Invalid IgBLAST installation at
  '/Users/biocbuild/Library/Caches/org.R-project.R/R/igblastr/igblast_roots/1.22.0'.
  '/Users/biocbuild/Library/Caches/org.R-project.R/R/igblastr/igblast_roots/1.22.0/bin/igblastn
  -version' does not work.
--- failed re-building ‘igblastr_overview.Rmd’

SUMMARY: processing the following file failed:
  ‘igblastr_overview.Rmd’

Error: Vignette re-building failed.
Execution halted