Multiple platform build/check report for BioC 3.22 - BUILD results for idpr on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4615
merida1	macOS 12.7.6 Monterey	x86_64	4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble"	4610
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"	4598
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4668
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for idpr on kjohnson1

To the developers/maintainers of the idpr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/idpr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: idpr

Version: 1.20.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data idpr

StartedAt: 2025-11-17 22:04:17 -0500 (Mon, 17 Nov 2025)

EndedAt: 2025-11-17 22:05:12 -0500 (Mon, 17 Nov 2025)

EllapsedTime: 54.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data idpr
###
##############################################################################
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* checking for file ‘idpr/DESCRIPTION’ ... OK
* preparing ‘idpr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘chargeHydropathy-vignette.Rmd’ using rmarkdown
2025-11-17 22:04:21.295 R[44727:2526866] XType: Using static font registry.
--- finished re-building ‘chargeHydropathy-vignette.Rmd’

--- re-building ‘disorderedMatrices-vignette.Rmd’ using rmarkdown
--- finished re-building ‘disorderedMatrices-vignette.Rmd’

--- re-building ‘idpr-vignette.Rmd’ using rmarkdown
--- finished re-building ‘idpr-vignette.Rmd’

--- re-building ‘iupred-vignette.Rmd’ using rmarkdown

Quitting from iupred-vignette.Rmd:251-255 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection to 'https://iupred2a.elte.hu/iupred2a/redox/P04637.json'
---
Backtrace:
    ▆
 1. └─idpr::iupredRedox(p53_ID, plotResults = FALSE)
 2.   └─jsonlite::fromJSON(iupredURL)
 3.     └─jsonlite:::parse_and_simplify(...)
 4.       └─jsonlite:::parseJSON(txt, bigint_as_char)
 5.         └─jsonlite:::parse_con(txt, bigint_as_char)
 6.           ├─base::open(con, "rb")
 7.           └─base::open.connection(con, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'iupred-vignette.Rmd' failed with diagnostics:
cannot open the connection to 'https://iupred2a.elte.hu/iupred2a/redox/P04637.json'
--- failed re-building ‘iupred-vignette.Rmd’

--- re-building ‘sequenceMAP-vignette.Rmd’ using rmarkdown
--- finished re-building ‘sequenceMAP-vignette.Rmd’

--- re-building ‘structuralTendency-vignette.Rmd’ using rmarkdown
--- finished re-building ‘structuralTendency-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘iupred-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted