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This page was generated on 2025-09-22 11:41 -0400 (Mon, 22 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4608
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4549
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4581
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1046/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iNETgrate 1.6.0  (landing page)
Habil Zare
Snapshot Date: 2025-09-18 13:40 -0400 (Thu, 18 Sep 2025)
git_url: https://git.bioconductor.org/packages/iNETgrate
git_branch: RELEASE_3_21
git_last_commit: 299831c
git_last_commit_date: 2025-04-15 13:16:57 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for iNETgrate on kunpeng2

To the developers/maintainers of the iNETgrate package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iNETgrate.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: iNETgrate
Version: 1.6.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:iNETgrate.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings iNETgrate_1.6.0.tar.gz
StartedAt: 2025-09-19 10:59:13 -0000 (Fri, 19 Sep 2025)
EndedAt: 2025-09-19 11:18:08 -0000 (Fri, 19 Sep 2025)
EllapsedTime: 1135.2 seconds
RetCode: 0
Status:   OK  
CheckDir: iNETgrate.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:iNETgrate.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings iNETgrate_1.6.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/iNETgrate.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘iNETgrate/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iNETgrate’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘iNETgrate’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
iNETgrate         167.545  1.484 169.386
computEigengenes   88.413  0.575  89.147
toyEigengenes      87.702  0.610  88.490
toyComputEloci     66.962  0.921  68.072
analyzeSurvival    64.493  1.088  65.729
makeNetwork        56.121  0.253  56.492
computEigenloci    20.743  0.447  21.231
cleanAllData       18.551  0.423  19.007
accelFailAnalysis   8.447  0.355   8.822
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

iNETgrate.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL iNETgrate
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘iNETgrate’ ...
** this is package ‘iNETgrate’ version ‘1.6.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iNETgrate)

Tests output


Example timings

iNETgrate.Rcheck/iNETgrate-Ex.timings

nameusersystemelapsed
accelFailAnalysis8.4470.3558.822
analyzeSurvival64.493 1.08865.729
bestInetgrator0.2880.0250.437
cleanAllData18.551 0.42319.007
computEigengenes88.413 0.57589.147
computEigenloci20.743 0.44721.231
computeInetgrator0.2580.0190.279
computeUnion2.5740.0882.665
coxAnalysis2.4460.0082.456
createLocusGene0.1600.0000.161
distanceToTss3.8770.0163.899
downloaData000
electGenes3.3000.0323.337
filterLowCor0.6560.0000.657
findAliveCutoff0.1540.0040.158
findCore2.4750.0082.486
findTcgaDuplicates0.2260.0000.226
iNETgrate-package0.2710.0200.291
iNETgrate167.545 1.484169.386
inferEigengenes0.2610.0190.282
makeNetwork56.121 0.25356.492
plotKM0.3870.0000.388
plotLociNum0.3170.0200.338
plotLociTss0.0570.0000.057
prepareSurvival0.1680.0000.168
preprocessDnam1.2020.0161.221
sample2pat0.2030.0000.203
sampleData0.6760.2120.890
toyCleanedAml0.1320.0000.133
toyComputEloci66.962 0.92168.072
toyEigengenes87.702 0.61088.490
toyRawAml0.1620.0000.162