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###
### Running command:
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### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL iClusterPlus
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* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'iClusterPlus' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using Fortran compiler: 'GNU Fortran (GCC) 13.3.0'
gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c iClusterBayes.c -o iClusterBayes.o
iClusterBayes.c: In function 'mcmcBayes':
iClusterBayes.c:1218:28: warning: variable 'Zdraw' set but not used [-Wunused-but-set-variable]
1218 | int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
| ^~~~~
iClusterBayes.c:1218:20: warning: variable 'Zburnin' set but not used [-Wunused-but-set-variable]
1218 | int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
| ^~~~~~~
iClusterBayes.c:1374:6: warning: 'gb5' may be used uninitialized [-Wmaybe-uninitialized]
1374 | mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1375 | &ty0,&p0,a0,gb0,con0,cat0,sigma0,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1376 | &ty1,&p1,a1,gb1,con1,cat1,sigma1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1377 | &ty2,&p2,a2,gb2,con2,cat2,sigma2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1378 | &ty3,&p3,a3,gb3,con3,cat3,sigma3,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1379 | &ty4,&p4,a4,gb4,con4,cat4,sigma4,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1380 | &ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iClusterBayes.c:1220:184: note: 'gb5' was declared here
1220 | double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
| ^~~
iClusterBayes.c:1374:6: warning: 'gb0' may be used uninitialized [-Wmaybe-uninitialized]
1374 | mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1375 | &ty0,&p0,a0,gb0,con0,cat0,sigma0,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1376 | &ty1,&p1,a1,gb1,con1,cat1,sigma1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1377 | &ty2,&p2,a2,gb2,con2,cat2,sigma2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1378 | &ty3,&p3,a3,gb3,con3,cat3,sigma3,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1379 | &ty4,&p4,a4,gb4,con4,cat4,sigma4,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1380 | &ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iClusterBayes.c:1220:159: note: 'gb0' was declared here
1220 | double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
| ^~~
iClusterBayes.c:1374:6: warning: 'gb1' may be used uninitialized [-Wmaybe-uninitialized]
1374 | mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1375 | &ty0,&p0,a0,gb0,con0,cat0,sigma0,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1376 | &ty1,&p1,a1,gb1,con1,cat1,sigma1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1377 | &ty2,&p2,a2,gb2,con2,cat2,sigma2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1378 | &ty3,&p3,a3,gb3,con3,cat3,sigma3,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1379 | &ty4,&p4,a4,gb4,con4,cat4,sigma4,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1380 | &ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iClusterBayes.c:1220:164: note: 'gb1' was declared here
1220 | double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
| ^~~
iClusterBayes.c:1374:6: warning: 'gb2' may be used uninitialized [-Wmaybe-uninitialized]
1374 | mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1375 | &ty0,&p0,a0,gb0,con0,cat0,sigma0,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1376 | &ty1,&p1,a1,gb1,con1,cat1,sigma1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1377 | &ty2,&p2,a2,gb2,con2,cat2,sigma2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1378 | &ty3,&p3,a3,gb3,con3,cat3,sigma3,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1379 | &ty4,&p4,a4,gb4,con4,cat4,sigma4,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1380 | &ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iClusterBayes.c:1220:169: note: 'gb2' was declared here
1220 | double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
| ^~~
iClusterBayes.c:1374:6: warning: 'gb3' may be used uninitialized [-Wmaybe-uninitialized]
1374 | mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1375 | &ty0,&p0,a0,gb0,con0,cat0,sigma0,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1376 | &ty1,&p1,a1,gb1,con1,cat1,sigma1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1377 | &ty2,&p2,a2,gb2,con2,cat2,sigma2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1378 | &ty3,&p3,a3,gb3,con3,cat3,sigma3,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1379 | &ty4,&p4,a4,gb4,con4,cat4,sigma4,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1380 | &ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iClusterBayes.c:1220:174: note: 'gb3' was declared here
1220 | double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
| ^~~
iClusterBayes.c:1374:6: warning: 'gb4' may be used uninitialized [-Wmaybe-uninitialized]
1374 | mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1375 | &ty0,&p0,a0,gb0,con0,cat0,sigma0,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1376 | &ty1,&p1,a1,gb1,con1,cat1,sigma1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1377 | &ty2,&p2,a2,gb2,con2,cat2,sigma2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1378 | &ty3,&p3,a3,gb3,con3,cat3,sigma3,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1379 | &ty4,&p4,a4,gb4,con4,cat4,sigma4,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1380 | &ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iClusterBayes.c:1220:179: note: 'gb4' was declared here
1220 | double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
| ^~~
gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c iClusterPlus.c -o iClusterPlus.o
gfortran -fdefault-real-8 -ffixed-form -O2 -mfpmath=sse -msse2 -mstackrealign -c newGLMnet.f90 -o newGLMnet.o
gcc -shared -s -static-libgcc -o iClusterPlus.dll tmp.def iClusterBayes.o iClusterPlus.o newGLMnet.o -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgfortran -lm -lquadmath -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-iClusterPlus/00new/iClusterPlus/libs/x64
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iClusterPlus)
