Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:05 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 885/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
goProfiles 1.68.0 (landing page) Alex Sanchez
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the goProfiles package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/goProfiles.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: goProfiles |
Version: 1.68.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:goProfiles.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings goProfiles_1.68.0.tar.gz |
StartedAt: 2024-12-20 02:09:40 -0500 (Fri, 20 Dec 2024) |
EndedAt: 2024-12-20 02:13:05 -0500 (Fri, 20 Dec 2024) |
EllapsedTime: 204.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: goProfiles.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:goProfiles.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings goProfiles_1.68.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/goProfiles.Rcheck' * using R version 4.4.2 (2024-10-31 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'goProfiles/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'goProfiles' version '1.68.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'goProfiles' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) compareGeneLists.Rd:6: Escaped LaTeX specials: \~ checkRd: (-1) compareProfilesLists.Rd:7: Escaped LaTeX specials: \~ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed compareGeneLists 21.25 0.45 25.75 equivalentGOProfiles 12.69 0.29 13.09 fisherGOProfiles 5.53 0.16 5.68 basicProfile 3.45 0.20 7.14 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.20-bioc/meat/goProfiles.Rcheck/00check.log' for details.
goProfiles.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL goProfiles ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'goProfiles' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (goProfiles)
goProfiles.Rcheck/goProfiles-Ex.timings
name | user | system | elapsed | |
CD4ids | 0 | 0 | 0 | |
GOTermsList | 0 | 0 | 0 | |
basicProfile | 3.45 | 0.20 | 7.14 | |
compSummary | 0 | 0 | 0 | |
compareGOProfiles | 4.19 | 0.08 | 4.26 | |
compareGeneLists | 21.25 | 0.45 | 25.75 | |
compareProfilesLists | 0 | 0 | 0 | |
contractedProfile | 1.60 | 0.05 | 1.66 | |
conversionFunctions | 0.04 | 0.02 | 0.04 | |
drosophila | 0 | 0 | 0 | |
equivClust | 0 | 0 | 0 | |
equivClust2pdf | 0.06 | 0.00 | 0.06 | |
equivSummary | 0 | 0 | 0 | |
equivalentGOProfiles | 12.69 | 0.29 | 13.09 | |
expandedLevel | 1.47 | 0.02 | 1.49 | |
expandedProfile | 0.63 | 0.03 | 0.66 | |
fisherGOProfiles | 5.53 | 0.16 | 5.68 | |
fitGOProfile | 0.00 | 0.01 | 0.02 | |
hugoIds | 0.01 | 0.00 | 0.01 | |
iterEquivClust | 0 | 0 | 0 | |
mergeProfilesLists | 4.27 | 0.11 | 4.38 | |
ngenes | 2.12 | 0.05 | 2.17 | |
omimIds | 0 | 0 | 0 | |
plotProfiles | 4.49 | 0.08 | 4.56 | |
printProfiles | 4.64 | 0.04 | 4.69 | |
prostateIds | 0.01 | 0.00 | 0.02 | |