| Back to Build/check report for BioC 3.22: simplified long |
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This page was generated on 2026-03-31 11:57 -0400 (Tue, 31 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4893 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 881/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ggspavis 1.16.0 (landing page) Lukas M. Weber
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for ggspavis in R Universe. | ||||||||||||||
|
To the developers/maintainers of the ggspavis package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ggspavis.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ggspavis |
| Version: 1.16.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ggspavis |
| StartedAt: 2026-03-30 17:45:40 -0400 (Mon, 30 Mar 2026) |
| EndedAt: 2026-03-30 17:47:16 -0400 (Mon, 30 Mar 2026) |
| EllapsedTime: 96.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ggspavis
###
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* checking for file ‘ggspavis/DESCRIPTION’ ... OK
* preparing ‘ggspavis’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ggspavis_overview.Rmd’ using rmarkdown
Quitting from ggspavis_overview.Rmd:223-240 [loadvhd8sub]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! lexical error: invalid char in json text.
<html> <head><title>500 Intern
(right here) ------^
---
Backtrace:
▆
1. └─OSTA.data::OSTA.data_load(id)
2. ├─base::match.arg(id, OSTA.data_list(url))
3. └─OSTA.data::OSTA.data_list(url)
4. └─osfr::osf_retrieve_node(url)
5. └─osfr:::.osf_node_retrieve(id)
6. └─osfr:::process_response(res)
7. └─jsonlite::fromJSON(res$parse("UTF-8"), simplifyVector = FALSE)
8. └─jsonlite:::parse_and_simplify(...)
9. └─jsonlite:::parseJSON(txt, bigint_as_char)
10. └─jsonlite:::parse_string(txt, bigint_as_char)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ggspavis_overview.Rmd' failed with diagnostics:
lexical error: invalid char in json text.
<html> <head><title>500 Intern
(right here) ------^
--- failed re-building ‘ggspavis_overview.Rmd’
SUMMARY: processing the following file failed:
‘ggspavis_overview.Rmd’
Error: Vignette re-building failed.
Execution halted