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This page was generated on 2025-08-21 11:41 -0400 (Thu, 21 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4824 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4604 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4545 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 828/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Wei Sun
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the genoCN package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genoCN.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: genoCN |
| Version: 1.60.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data genoCN |
| StartedAt: 2025-08-19 01:20:31 -0400 (Tue, 19 Aug 2025) |
| EndedAt: 2025-08-19 01:20:33 -0400 (Tue, 19 Aug 2025) |
| EllapsedTime: 2.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data genoCN
###
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* checking for file ‘genoCN/DESCRIPTION’ ... OK
* preparing ‘genoCN’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘genoCN’ ...
** this is package ‘genoCN’ version ‘1.60.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tnorm_mle.c -o tnorm_mle.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utility.c -o utility.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c xCNV.c -o xCNV.o
xCNV.c:317:16: warning: unused variable 'K' [-Wunused-variable]
int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR;
^
xCNV.c:317:25: warning: unused variable 'k' [-Wunused-variable]
int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR;
^
xCNV.c:449:35: error: expected expression
trans1 = (double**) Calloc(N, double*);
^
xCNV.c:449:25: error: use of undeclared identifier 'Calloc'
trans1 = (double**) Calloc(N, double*);
^
xCNV.c:450:39: error: expected expression
trans1[0] = (double*) Calloc(N*N, double);
^
xCNV.c:450:27: error: use of undeclared identifier 'Calloc'
trans1[0] = (double*) Calloc(N*N, double);
^
xCNV.c:455:33: error: expected expression
v_old = (double *)Calloc(N, double);
^
xCNV.c:455:23: error: use of undeclared identifier 'Calloc'
v_old = (double *)Calloc(N, double);
^
xCNV.c:456:33: error: expected expression
v_new = (double *)Calloc(N, double);
^
xCNV.c:456:23: error: use of undeclared identifier 'Calloc'
v_new = (double *)Calloc(N, double);
^
xCNV.c:458:32: error: expected expression
path_m = (int**) Calloc(L, int*);
^
xCNV.c:458:22: error: use of undeclared identifier 'Calloc'
path_m = (int**) Calloc(L, int*);
^
xCNV.c:459:36: error: expected expression
path_m[0] = (int*) Calloc(L*N, int);
^
xCNV.c:459:24: error: use of undeclared identifier 'Calloc'
path_m[0] = (int*) Calloc(L*N, int);
^
xCNV.c:464:31: error: expected expression
tmp = (double *)Calloc(N, double);
^
xCNV.c:464:21: error: use of undeclared identifier 'Calloc'
tmp = (double *)Calloc(N, double);
^
xCNV.c:532:5: error: use of undeclared identifier 'Free'; did you mean 'free'?
Free(v_old);
^~~~
free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
xCNV.c:533:5: error: use of undeclared identifier 'Free'; did you mean 'free'?
Free(v_new);
^~~~
free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
xCNV.c:534:5: error: use of undeclared identifier 'Free'; did you mean 'free'?
Free(tmp);
^~~~
free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
xCNV.c:536:5: error: use of undeclared identifier 'Free'; did you mean 'free'?
Free(trans1[0]);
^~~~
free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
xCNV.c:537:5: error: use of undeclared identifier 'Free'; did you mean 'free'?
Free(trans1);
^~~~
free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
2 warnings and 20 errors generated.
make: *** [xCNV.o] Error 1
ERROR: compilation failed for package ‘genoCN’
* removing ‘/private/tmp/Rtmp4aJJhf/Rinst10a93350cb66b/genoCN’
-----------------------------------
ERROR: package installation failed