Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-12-23 12:07 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 763/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
gaga 2.52.0 (landing page) David Rossell
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | |||||||||
To the developers/maintainers of the gaga package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gaga.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: gaga |
Version: 2.52.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gaga |
StartedAt: 2024-12-19 15:17:38 -0500 (Thu, 19 Dec 2024) |
EndedAt: 2024-12-19 15:17:53 -0500 (Thu, 19 Dec 2024) |
EllapsedTime: 14.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gaga ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘gaga’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cseqdesma.c -o cseqdesma.o cseqdesma.c:4524:14: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((*usesumx==0)) { //if suff stat not pre-computed ~~~~~~~~^~~ cseqdesma.c:4524:14: note: remove extraneous parentheses around the comparison to silence this warning if ((*usesumx==0)) { //if suff stat not pre-computed ~ ^ ~ cseqdesma.c:4524:14: note: use '=' to turn this equality comparison into an assignment if ((*usesumx==0)) { //if suff stat not pre-computed ^~ = cseqdesma.c:5836:13: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((*usel==0)) { ~~~~~^~~ cseqdesma.c:5836:13: note: remove extraneous parentheses around the comparison to silence this warning if ((*usel==0)) { ~ ^ ~ cseqdesma.c:5836:13: note: use '=' to turn this equality comparison into an assignment if ((*usel==0)) { ^~ = cseqdesma.c:6070:13: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((*usel==0)) { ~~~~~^~~ cseqdesma.c:6070:13: note: remove extraneous parentheses around the comparison to silence this warning if ((*usel==0)) { ~ ^ ~ cseqdesma.c:6070:13: note: use '=' to turn this equality comparison into an assignment if ((*usel==0)) { ^~ = cseqdesma.c:6340:13: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((*usel==0)) { //If l values have to be generated ~~~~~^~~ cseqdesma.c:6340:13: note: remove extraneous parentheses around the comparison to silence this warning if ((*usel==0)) { //If l values have to be generated ~ ^ ~ cseqdesma.c:6340:13: note: use '=' to turn this equality comparison into an assignment if ((*usel==0)) { //If l values have to be generated ^~ = 4 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cstat.c -o cstat.o cstat.c:26:15: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a previous declaration [-Wdeprecated-non-prototype] FILE *ifile, *fopen(), *ofile; ^ cstat.c:1477:14: warning: a function declaration without a prototype is deprecated in all versions of C and is treated as a zero-parameter prototype in C2x, conflicting with a previous declaration [-Wdeprecated-non-prototype] double gamdev(); ^ ./cstat.h:172:8: note: conflicting prototype is here double gamdev(double ); ^ cstat.c:1838:6: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] if(abs(ndf - 2.0) < eps) { /* df ~= 2 */ ^ cstat.c:1838:6: note: use function 'fabs' instead if(abs(ndf - 2.0) < eps) { /* df ~= 2 */ ^~~ fabs cstat.c:18:19: warning: unused variable 'interface_c_sccs_id' [-Wunused-const-variable] static const char interface_c_sccs_id[] = "%W%"; ^ cstat.c:19:19: warning: unused variable 'mess_c_sccs_id' [-Wunused-const-variable] static const char mess_c_sccs_id[] = "%W%"; ^ cstat.c:20:19: warning: unused variable 'nrutil_c_sccs_id' [-Wunused-const-variable] static const char nrutil_c_sccs_id[] = "%W%"; ^ cstat.c:21:19: warning: unused variable 'vector_c_sccs_id' [-Wunused-const-variable] static const char vector_c_sccs_id[] = "%W%"; ^ cstat.c:22:19: warning: unused variable 'css_c_sccs_id' [-Wunused-const-variable] static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$"; ^ 8 warnings generated. clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o gaga.so cseqdesma.o cstat.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-gaga/00new/gaga/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gaga)