Angelo Velle
| Snapshot Date: 2026-05-07 13:40 -0400 (Thu, 07 May 2026) |
| git_url: https://git.bioconductor.org/packages/gINTomics |
| git_branch: RELEASE_3_23 |
| git_last_commit: a84669e |
| git_last_commit_date: 2026-04-28 09:03:03 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-08 11:34 -0400 (Fri, 08 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4992 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4725 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 908/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gINTomics 1.8.0 (landing page) Angelo Velle
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for gINTomics in R Universe. | ||||||||||||||
|
To the developers/maintainers of the gINTomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gINTomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gINTomics |
| Version: 1.8.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gINTomics |
| StartedAt: 2026-05-07 15:59:59 -0400 (Thu, 07 May 2026) |
| EndedAt: 2026-05-07 16:00:12 -0400 (Thu, 07 May 2026) |
| EllapsedTime: 12.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gINTomics
###
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* checking for file ‘gINTomics/DESCRIPTION’ ... OK
* preparing ‘gINTomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
-----------------------------------
* installing *source* package ‘gINTomics’ ...
** this is package ‘gINTomics’ version ‘1.8.0’
** using staged installation
** R
[2026-05-07 16:00:05] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2026-05-07 16:00:05] [TRACE] [OmnipathR] JSON validation successful: TRUE
[2026-05-07 16:00:05] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2026-05-07 16:00:05] [INFO] [OmnipathR] Package `OmnipathR` packaged: NA
[2026-05-07 16:00:05] [INFO] [OmnipathR] Package `OmnipathR` date/publication: 2026-05-05
[2026-05-07 16:00:05] [INFO] [OmnipathR] Package `OmnipathR` built: R 4.6.0; ; 2026-05-05 19:05:13 UTC; unix
[2026-05-07 16:00:05] [INFO] [OmnipathR] Package `OmnipathR` version: 4.0.0
[2026-05-07 16:00:05] [INFO] [OmnipathR] Package `OmnipathR` repository: Bioconductor 3.23
** data
** inst
** byte-compile and prepare package for lazy loading
[2026-05-07 16:00:11] [TRACE] [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2026-05-07 16:00:11] [TRACE] [OmnipathR] JSON validation successful: TRUE
[2026-05-07 16:00:11] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2026-05-07 16:00:11] [INFO] [OmnipathR] Package `OmnipathR` packaged: NA
[2026-05-07 16:00:11] [INFO] [OmnipathR] Package `OmnipathR` date/publication: 2026-05-05
[2026-05-07 16:00:11] [INFO] [OmnipathR] Package `OmnipathR` built: R 4.6.0; ; 2026-05-05 19:05:13 UTC; unix
[2026-05-07 16:00:11] [INFO] [OmnipathR] Package `OmnipathR` version: 4.0.0
[2026-05-07 16:00:11] [INFO] [OmnipathR] Package `OmnipathR` repository: Bioconductor 3.23
Error: .onLoad failed in loadNamespace() for 'OmnipathR', details:
call: strsplit(info, "\n", useBytes = TRUE)[[1]]
error: subscript out of bounds
Execution halted
ERROR: lazy loading failed for package ‘gINTomics’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmpq4ogMs/Rinst1327b1bfb10ca/gINTomics’
-----------------------------------
ERROR: package installation failed