Arkadiusz Gladki
| Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/gDRimport |
| git_branch: RELEASE_3_20 |
| git_last_commit: 42daf09 |
| git_last_commit_date: 2024-10-29 11:21:31 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-23 12:06 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 779/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gDRimport 1.4.0 (landing page) Arkadiusz Gladki
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the gDRimport package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDRimport.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gDRimport |
| Version: 1.4.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.4.0.tar.gz |
| StartedAt: 2024-12-20 03:41:04 -0500 (Fri, 20 Dec 2024) |
| EndedAt: 2024-12-20 03:47:15 -0500 (Fri, 20 Dec 2024) |
| EllapsedTime: 370.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: gDRimport.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.4.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/gDRimport.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gDRimport/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gDRimport’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gDRimport’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
convert_MAE_to_PSet 11.592 0.484 12.267
import_D300 6.032 0.709 7.172
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
gDRimport.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gDRimport ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘gDRimport’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gDRimport)
gDRimport.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(gDRimport)
>
> test_check("gDRimport")
2024-12-20 03:46:17 Building assay index...
2024-12-20 03:46:17 Joining rowData to assayIndex...
2024-12-20 03:46:18 Joining colData to assayIndex...
2024-12-20 03:46:19 Joining assays to assayIndex...
2024-12-20 03:46:20 Setting assayIndex key...
2024-12-20 03:46:21 Building LongTable...
2024-12-20 03:46:23 Building assay index...
2024-12-20 03:46:23 Joining rowData to assayIndex...
2024-12-20 03:46:24 Joining colData to assayIndex...
2024-12-20 03:46:25 Joining assays to assayIndex...
2024-12-20 03:46:26 Setting assayIndex key...
2024-12-20 03:46:27 Building LongTable...
INFO [2024-12-20 03:46:28] Manifest loaded successfully
INFO [2024-12-20 03:46:28] Manifest loaded successfully
INFO [2024-12-20 03:46:28] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-20 03:46:29] Plate 201904190a read; 384 wells
INFO [2024-12-20 03:46:29] Plate 201904190b read; 384 wells
INFO [2024-12-20 03:46:29] Plate 201904190c read; 384 wells
INFO [2024-12-20 03:46:29] Plate 201904190d read; 384 wells
INFO [2024-12-20 03:46:29] Plate 201904190e read; 384 wells
INFO [2024-12-20 03:46:29] Plate 201904190f read; 384 wells
INFO [2024-12-20 03:46:29] File done
INFO [2024-12-20 03:46:29] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-20 03:46:30] Plate 201904197a read; 384 wells
INFO [2024-12-20 03:46:30] Plate 201904197b read; 384 wells
INFO [2024-12-20 03:46:30] Plate 201904197c read; 384 wells
INFO [2024-12-20 03:46:30] Plate 201904197d read; 384 wells
INFO [2024-12-20 03:46:30] Plate 201904197e read; 384 wells
INFO [2024-12-20 03:46:30] Plate 201904197f read; 384 wells
INFO [2024-12-20 03:46:30] File done
INFO [2024-12-20 03:46:30] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-20 03:46:31] Plate 201904190a read; 384 wells
INFO [2024-12-20 03:46:31] Plate 201904190b read; 384 wells
INFO [2024-12-20 03:46:31] Plate 201904190c read; 384 wells
INFO [2024-12-20 03:46:31] Plate 201904190d read; 384 wells
INFO [2024-12-20 03:46:31] Plate 201904190e read; 384 wells
INFO [2024-12-20 03:46:31] Plate 201904190f read; 384 wells
INFO [2024-12-20 03:46:31] File done
INFO [2024-12-20 03:46:31] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-20 03:46:33] Plate 201904197a read; 384 wells
INFO [2024-12-20 03:46:33] Plate 201904197b read; 384 wells
INFO [2024-12-20 03:46:33] Plate 201904197c read; 384 wells
INFO [2024-12-20 03:46:33] Plate 201904197d read; 384 wells
INFO [2024-12-20 03:46:33] Plate 201904197e read; 384 wells
INFO [2024-12-20 03:46:33] Plate 201904197f read; 384 wells
INFO [2024-12-20 03:46:33] File done
INFO [2024-12-20 03:46:33] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-20 03:46:34] Plate 201904190a read; 384 wells
INFO [2024-12-20 03:46:34] Plate 201904190b read; 384 wells
INFO [2024-12-20 03:46:34] Plate 201904190c read; 384 wells
INFO [2024-12-20 03:46:34] Plate 201904190d read; 384 wells
INFO [2024-12-20 03:46:34] Plate 201904190e read; 384 wells
INFO [2024-12-20 03:46:34] Plate 201904190f read; 384 wells
INFO [2024-12-20 03:46:34] File done
INFO [2024-12-20 03:46:34] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-12-20 03:46:34] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-12-20 03:46:35] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-12-20 03:46:35] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-12-20 03:46:35] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-20 03:46:35] Loading Template_7daytreated.xlsx
INFO [2024-12-20 03:46:36] Loading Template_Untreated.xlsx
INFO [2024-12-20 03:46:36] Templates loaded successfully!
INFO [2024-12-20 03:46:36] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-20 03:46:36] Loading Template_7daytreated.xlsx
INFO [2024-12-20 03:46:36] Loading Template_Untreated.xlsx
INFO [2024-12-20 03:46:36] Templates loaded successfully!
INFO [2024-12-20 03:46:36] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-12-20 03:46:36] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-12-20 03:46:37] Templates loaded successfully!
INFO [2024-12-20 03:46:37] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-20 03:46:37] Loading Template_7daytreated.xlsx
INFO [2024-12-20 03:46:37] Templates loaded successfully!
INFO [2024-12-20 03:46:37] Manifest loaded successfully
INFO [2024-12-20 03:46:37] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-20 03:46:37] Loading Template_7daytreated.xlsx
INFO [2024-12-20 03:46:37] Loading Template_Untreated.xlsx
INFO [2024-12-20 03:46:38] Templates loaded successfully!
INFO [2024-12-20 03:46:38] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-20 03:46:38] Plate 201904190a read; 384 wells
INFO [2024-12-20 03:46:38] Plate 201904190b read; 384 wells
INFO [2024-12-20 03:46:39] Plate 201904190c read; 384 wells
INFO [2024-12-20 03:46:39] Plate 201904190d read; 384 wells
INFO [2024-12-20 03:46:39] Plate 201904190e read; 384 wells
INFO [2024-12-20 03:46:39] Plate 201904190f read; 384 wells
INFO [2024-12-20 03:46:39] File done
INFO [2024-12-20 03:46:39] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-12-20 03:46:39] Plate 201904197a read; 384 wells
INFO [2024-12-20 03:46:39] Plate 201904197b read; 384 wells
INFO [2024-12-20 03:46:39] Plate 201904197c read; 384 wells
INFO [2024-12-20 03:46:39] Plate 201904197d read; 384 wells
INFO [2024-12-20 03:46:39] Plate 201904197e read; 384 wells
INFO [2024-12-20 03:46:40] Plate 201904197f read; 384 wells
INFO [2024-12-20 03:46:40] File done
INFO [2024-12-20 03:46:40] Manifest loaded successfully
INFO [2024-12-20 03:46:40] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-12-20 03:46:40] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-12-20 03:46:40] Templates loaded successfully!
INFO [2024-12-20 03:46:40] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-12-20 03:46:40] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-12-20 03:46:41] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-12-20 03:46:41] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-12-20 03:46:42] Manifest loaded successfully
INFO [2024-12-20 03:46:42] Reading Project40.treated.template.xlsx with load_templates_xlsx
INFO [2024-12-20 03:46:42] Loading Project40.treated.template.xlsx
INFO [2024-12-20 03:46:42] Loading Project40.untreated.template.xlsx
INFO [2024-12-20 03:46:42] Templates loaded successfully!
INFO [2024-12-20 03:46:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0109269D00.csv, sheet 0
INFO [2024-12-20 03:46:42] Plate H0109269D00 read; 384 wells
INFO [2024-12-20 03:46:42] File done
INFO [2024-12-20 03:46:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0109269D01.csv, sheet 0
INFO [2024-12-20 03:46:42] Plate H0109269D01 read; 384 wells
INFO [2024-12-20 03:46:42] File done
INFO [2024-12-20 03:46:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0309269D00.csv, sheet 0
INFO [2024-12-20 03:46:42] Plate H0309269D00 read; 384 wells
INFO [2024-12-20 03:46:42] File done
INFO [2024-12-20 03:46:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0309269D01.csv, sheet 0
INFO [2024-12-20 03:46:42] Plate H0309269D01 read; 384 wells
INFO [2024-12-20 03:46:42] File done
INFO [2024-12-20 03:46:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0409269D00.csv, sheet 0
INFO [2024-12-20 03:46:42] Plate H0409269D00 read; 384 wells
INFO [2024-12-20 03:46:42] File done
INFO [2024-12-20 03:46:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0409269D01.csv, sheet 0
INFO [2024-12-20 03:46:42] Plate H0409269D01 read; 384 wells
INFO [2024-12-20 03:46:42] File done
INFO [2024-12-20 03:46:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0509269D00.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H0509269D00 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0509269D01.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H0509269D01 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0609269D00.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H0609269D00 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0609269D01.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H0609269D01 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0709269D00.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H0709269D00 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0709269D01.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H0709269D01 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0809269D00.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H0809269D00 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0809269D01.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H0809269D01 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0909269D00.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H0909269D00 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0909269D01.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H0909269D01 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1109269D00.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H1109269D00 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1109269D01.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H1109269D01 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1209269D00.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H1209269D00 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1209269D01.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H1209269D01 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1409269D00.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H1409269D00 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1409269D01.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate H1409269D01 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0209269D00.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate K0209269D00 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0209269D01.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate K0209269D01 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0809269D00.csv, sheet 0
INFO [2024-12-20 03:46:43] Plate K0809269D00 read; 384 wells
INFO [2024-12-20 03:46:43] File done
INFO [2024-12-20 03:46:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0809269D01.csv, sheet 0
INFO [2024-12-20 03:46:44] Plate K0809269D01 read; 384 wells
INFO [2024-12-20 03:46:44] File done
INFO [2024-12-20 03:46:44] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K1009269D00.csv, sheet 0
INFO [2024-12-20 03:46:44] Plate K1009269D00 read; 384 wells
INFO [2024-12-20 03:46:44] File done
INFO [2024-12-20 03:46:44] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K1009269D01.csv, sheet 0
INFO [2024-12-20 03:46:44] Plate K1009269D01 read; 384 wells
INFO [2024-12-20 03:46:44] File done
INFO [2024-12-20 03:46:44] Manifest loaded successfully
INFO [2024-12-20 03:46:44] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-20 03:46:44] Loading Template_7daytreated.xlsx
INFO [2024-12-20 03:46:45] Loading Template_Untreated.xlsx
INFO [2024-12-20 03:46:45] Templates loaded successfully!
INFO [2024-12-20 03:46:45] Manifest loaded successfully
INFO [2024-12-20 03:46:45] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-12-20 03:46:45] Loading Template_7daytreated.xlsx
INFO [2024-12-20 03:46:45] Loading Template_Untreated.xlsx
INFO [2024-12-20 03:46:45] Templates loaded successfully!
INFO [2024-12-20 03:46:46] Manifest loaded successfully
INFO [2024-12-20 03:46:46] Reading Template_trt.tsv with load_templates_tsv
INFO [2024-12-20 03:46:46] Loading Template_trt.tsv
INFO [2024-12-20 03:46:46] Loading Template_untrt.tsv
INFO [2024-12-20 03:46:46] Templates loaded successfully!
INFO [2024-12-20 03:46:46] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data5/RawData.tsv
WARN [2024-12-20 03:46:50] Metadata field names for cannot contain spaces --> corrected to: Gnumber
WARN [2024-12-20 03:46:50] Header Gnumber in corrected to Gnumber
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 139 ]
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 139 ]
>
>
> proc.time()
user system elapsed
93.918 5.158 103.903
gDRimport.Rcheck/gDRimport-Ex.timings
| name | user | system | elapsed | |
| check_metadata_names | 0.137 | 0.020 | 0.158 | |
| convert_LEVEL5_prism_to_gDR_input | 0.026 | 0.004 | 0.031 | |
| convert_LEVEL6_prism_to_gDR_input | 0.027 | 0.007 | 0.034 | |
| convert_MAE_to_PSet | 11.592 | 0.484 | 12.267 | |
| convert_pset_to_df | 0.270 | 0.052 | 0.314 | |
| detect_file_format | 0.642 | 0.040 | 0.639 | |
| getPSet | 0.245 | 0.011 | 0.258 | |
| get_exception_data | 0.014 | 0.005 | 0.020 | |
| get_test_D300_data | 0.003 | 0.002 | 0.004 | |
| get_test_EnVision_data | 0.004 | 0.003 | 0.006 | |
| get_test_Tecan_data | 0.002 | 0.001 | 0.004 | |
| get_test_data | 0.005 | 0.001 | 0.005 | |
| get_test_tsv_data | 0.003 | 0.001 | 0.004 | |
| import_D300 | 6.032 | 0.709 | 7.172 | |
| is_readable_v | 0.003 | 0.001 | 0.003 | |
| load_data | 2.908 | 0.126 | 3.175 | |
| load_manifest | 0.101 | 0.007 | 0.101 | |
| load_results | 2.319 | 0.056 | 2.400 | |
| load_templates | 0.471 | 0.058 | 0.530 | |
| manifest_path-method | 0.004 | 0.001 | 0.005 | |
| parse_D300_xml | 2.572 | 0.013 | 2.691 | |
| read_excel_to_dt | 0.043 | 0.022 | 0.072 | |
| result_path-method | 0.004 | 0.001 | 0.005 | |
| setEnvForPSet | 0.001 | 0.001 | 0.002 | |
| standardize_record_values | 0.000 | 0.001 | 0.000 | |
| template_path-method | 0.004 | 0.001 | 0.005 | |